Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:27:13 (3128017): wrapper (7.7.26015): starting
17:27:13 (3128017): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 17:27:13] Arguments: --nthreads 8
[2026-01-09 17:27:13] Threads: 8
[2026-01-09 17:27:13] Checking for CVMFS
[2026-01-09 17:27:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 17:27:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 17:27:13] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 17:27:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 17:27:14] 2.13.3.0 12650 12652 138464 154959 2 64 29781688 32935937 11234 16776704 0 11010675 99.855 9992807 40580 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 17:27:14] CVMFS is ok
[2026-01-09 17:27:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 17:27:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 17:27:14] Further information can be found at the LHC@home message board.
[2026-01-09 17:27:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 17:27:14] Checking for apptainer binary...
[2026-01-09 17:27:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 17:27:14] Running /usr/bin/apptainer --version
[2026-01-09 17:27:14] apptainer version 1.4.5-2.el9
[2026-01-09 17:27:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 17:27:14] c6-6-39-1.aglt2.org
[2026-01-09 17:27:14] apptainer works
[2026-01-09 17:27:14] Set ATHENA_PROC_NUMBER=8
[2026-01-09 17:27:14] Set ATHENA_CORE_NUMBER=8
[2026-01-09 17:27:14] Starting ATLAS job with PandaID=6963188497
[2026-01-09 17:27:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 23:12:20]  *** The last 200 lines of the pilot log: ***
[2026-01-09 23:12:20] 2026-01-10 04:11:43,387 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 23:12:20] 2026-01-10 04:11:45,148 | INFO     | time since job start (20653s) is within the limit (349056.0s)
[2026-01-09 23:12:20] 2026-01-10 04:11:45,898 | INFO     | monitor loop #1368: job 0:6963188497 is in state 'finished'
[2026-01-09 23:12:20] 2026-01-10 04:11:45,899 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 23:12:20] 2026-01-10 04:11:47,155 | INFO     | time since job start (20655s) is within the limit (349056.0s)
[2026-01-09 23:12:20] 2026-01-10 04:11:48,411 | INFO     | monitor loop #1369: job 0:6963188497 is in state 'finished'
[2026-01-09 23:12:20] 2026-01-10 04:11:48,411 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 23:12:20] 2026-01-10 04:11:48,497 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 23:12:20] 2026-01-10 04:11:48,509 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2983.593160714286
[2026-01-09 23:12:20] 2026-01-10 04:11:48,523 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963188497/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 23:12:20] 2026-01-10 04:11:48,527 | INFO     | extracted standard info from prmon json
[2026-01-09 23:12:20] 2026-01-10 04:11:48,527 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 23:12:20] 2026-01-10 04:11:48,527 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 23:12:20] 2026-01-10 04:11:48,527 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 23:12:20] 2026-01-10 04:11:48,528 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 23:12:20] 2026-01-10 04:11:48,537 | INFO     | fitting pss+swap vs Time
[2026-01-09 23:12:20] 2026-01-10 04:11:48,558 | INFO     | sum of square deviations: 11973832453.683432
[2026-01-09 23:12:20] 2026-01-10 04:11:48,560 | INFO     | sum of deviations: 13462850232.92603
[2026-01-09 23:12:20] 2026-01-10 04:11:48,560 | INFO     | mean x: 1768007964.642012
[2026-01-09 23:12:20] 2026-01-10 04:11:48,560 | INFO     | mean y: 2535645.9911242602
[2026-01-09 23:12:20] 2026-01-10 04:11:48,561 | INFO     | intersect: -1985334698.0000012
[2026-01-09 23:12:20] 2026-01-10 04:11:48,566 | INFO     | chi2: 1.6987127393501888
[2026-01-09 23:12:20] 2026-01-10 04:11:48,567 | INFO     | sum of square deviations: 11450272716.36642
[2026-01-09 23:12:20] 2026-01-10 04:11:48,569 | INFO     | sum of deviations: 11851161991.405388
[2026-01-09 23:12:20] 2026-01-10 04:11:48,569 | INFO     | mean x: 1768007812.1411412
[2026-01-09 23:12:20] 2026-01-10 04:11:48,570 | INFO     | mean y: 2535176.4594594594
[2026-01-09 23:12:20] 2026-01-10 04:11:48,570 | INFO     | intersect: -1827372940.3844163
[2026-01-09 23:12:20] 2026-01-10 04:11:48,579 | INFO     | chi2: 1.6976318878147219
[2026-01-09 23:12:20] 2026-01-10 04:11:48,580 | INFO     | current chi2=1.6976318878147219 (change=0.06362768173978949 %)
[2026-01-09 23:12:20] 2026-01-10 04:11:48,580 | INFO     | right removable region: 332
[2026-01-09 23:12:20] 2026-01-10 04:11:48,580 | INFO     | sum of square deviations: 11450263811.081106
[2026-01-09 23:12:20] 2026-01-10 04:11:48,583 | INFO     | sum of deviations: -32728333826.351337
[2026-01-09 23:12:20] 2026-01-10 04:11:48,583 | INFO     | mean x: 1768008117.144144
[2026-01-09 23:12:20] 2026-01-10 04:11:48,594 | INFO     | mean y: 2548989.8198198196
[2026-01-09 23:12:20] 2026-01-10 04:11:48,594 | INFO     | intersect: 5056053504.675976
[2026-01-09 23:12:20] 2026-01-10 04:11:48,595 | INFO     | chi2: 0.3449303284472607
[2026-01-09 23:12:20] 2026-01-10 04:11:48,595 | INFO     | current chi2=0.3449303284472607 (change=79.69460518797267 %)
[2026-01-09 23:12:20] 2026-01-10 04:11:48,595 | INFO     | sum of square deviations: 10942183830.975576
[2026-01-09 23:12:20] 2026-01-10 04:11:48,598 | INFO     | sum of deviations: -32102646401.43905
[2026-01-09 23:12:20] 2026-01-10 04:11:48,603 | INFO     | mean x: 1768008269.6463416
[2026-01-09 23:12:20] 2026-01-10 04:11:48,603 | INFO     | mean y: 2548803.1341463416
[2026-01-09 23:12:20] 2026-01-10 04:11:48,603 | INFO     | intersect: 5189606998.464817
[2026-01-09 23:12:20] 2026-01-10 04:11:48,604 | INFO     | chi2: 0.3444435153899296
[2026-01-09 23:12:20] 2026-01-10 04:11:48,604 | INFO     | current chi2=0.3444435153899296 (change=0.14113373547710292 %)
[2026-01-09 23:12:20] 2026-01-10 04:11:48,604 | INFO     | left removable region: 20
[2026-01-09 23:12:20] 2026-01-10 04:11:48,604 | INFO     | sum of square deviations: 9417738927.79482
[2026-01-09 23:12:20] 2026-01-10 04:11:48,607 | INFO     | sum of deviations: -23255216717.102554
[2026-01-09 23:12:20] 2026-01-10 04:11:48,607 | INFO     | mean x: 1768008391.6410255
[2026-01-09 23:12:20] 2026-01-10 04:11:48,614 | INFO     | mean y: 2545159.3205128205
[2026-01-09 23:12:20] 2026-01-10 04:11:48,614 | INFO     | intersect: 4368287151.161352
[2026-01-09 23:12:20] 2026-01-10 04:11:48,615 | INFO     | chi2: 0.3112532258022505
[2026-01-09 23:12:20] 2026-01-10 04:11:48,615 | INFO     | current memory leak: -2.47 B/s (using 312 data points, chi2=0.31)
[2026-01-09 23:12:20] 2026-01-10 04:11:48,615 | INFO     | could have reported an average CPU frequency of 2965 MHz (15 samples)
[2026-01-09 23:12:20] 2026-01-10 04:11:48,616 | INFO     | ..............................
[2026-01-09 23:12:20] 2026-01-10 04:11:48,616 | INFO     | . Timing measurements:
[2026-01-09 23:12:20] 2026-01-10 04:11:48,616 | INFO     | . get job = 0 s
[2026-01-09 23:12:20] 2026-01-10 04:11:48,616 | INFO     | . initial setup = 3 s
[2026-01-09 23:12:20] 2026-01-10 04:11:48,616 | INFO     | . payload setup = 8 s
[2026-01-09 23:12:20] 2026-01-10 04:11:48,616 | INFO     | . stage-in = 0 s
[2026-01-09 23:12:20] 2026-01-10 04:11:48,616 | INFO     | . payload execution = 20608 s
[2026-01-09 23:12:20] 2026-01-10 04:11:48,616 | INFO     | . stage-out = 2 s
[2026-01-09 23:12:20] 2026-01-10 04:11:48,616 | INFO     | . log creation = 0 s
[2026-01-09 23:12:20] 2026-01-10 04:11:48,616 | INFO     | ..............................
[2026-01-09 23:12:20] 2026-01-10 04:11:48,800 | INFO     | 
[2026-01-09 23:12:20] 2026-01-10 04:11:48,802 | INFO     | job summary report
[2026-01-09 23:12:20] 2026-01-10 04:11:48,802 | INFO     | --------------------------------------------------
[2026-01-09 23:12:20] 2026-01-10 04:11:48,802 | INFO     | PanDA job id: 6963188497
[2026-01-09 23:12:20] 2026-01-10 04:11:48,802 | INFO     | task id: 47898826
[2026-01-09 23:12:20] 2026-01-10 04:11:48,802 | INFO     | errors: (none)
[2026-01-09 23:12:20] 2026-01-10 04:11:48,802 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 23:12:20] 2026-01-10 04:11:48,802 | INFO     | pilot state: finished 
[2026-01-09 23:12:20] 2026-01-10 04:11:48,802 | INFO     | transexitcode: 0
[2026-01-09 23:12:20] 2026-01-10 04:11:48,802 | INFO     | exeerrorcode: 0
[2026-01-09 23:12:20] 2026-01-10 04:11:48,802 | INFO     | exeerrordiag: 
[2026-01-09 23:12:20] 2026-01-10 04:11:48,802 | INFO     | exitcode: 0
[2026-01-09 23:12:20] 2026-01-10 04:11:48,802 | INFO     | exitmsg: OK
[2026-01-09 23:12:20] 2026-01-10 04:11:48,802 | INFO     | cpuconsumptiontime: 54807 s
[2026-01-09 23:12:20] 2026-01-10 04:11:48,803 | INFO     | nevents: 400
[2026-01-09 23:12:20] 2026-01-10 04:11:48,803 | INFO     | neventsw: 0
[2026-01-09 23:12:20] 2026-01-10 04:11:48,803 | INFO     | pid: 3138675
[2026-01-09 23:12:20] 2026-01-10 04:11:48,803 | INFO     | pgrp: 3138675
[2026-01-09 23:12:20] 2026-01-10 04:11:48,803 | INFO     | corecount: 8
[2026-01-09 23:12:20] 2026-01-10 04:11:48,803 | INFO     | event service: False
[2026-01-09 23:12:20] 2026-01-10 04:11:48,803 | INFO     | sizes: {0: 2283971, 7: 2284233, 11: 2284261, 20620: 2318064, 20621: 2318063, 20624: 2327117, 20626: 2327301, 20638: 2327495}
[2026-01-09 23:12:20] 2026-01-10 04:11:48,803 | INFO     | --------------------------------------------------
[2026-01-09 23:12:20] 2026-01-10 04:11:48,803 | INFO     | 
[2026-01-09 23:12:20] 2026-01-10 04:11:48,803 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-09 23:12:20] 2026-01-10 04:11:48,822 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 23:12:20] 2026-01-10 04:11:48,822 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 23:12:20] 2026-01-10 04:11:48,822 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 23:12:20] 2026-01-10 04:11:48,822 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 23:12:20] 2026-01-10 04:11:48,822 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 23:12:20] 2026-01-10 04:11:48,822 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 23:12:20] 2026-01-10 04:11:48,822 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 23:12:20] 2026-01-10 04:11:48,823 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 23:12:20] 2026-01-10 04:11:48,823 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 23:12:20] 2026-01-10 04:11:48,823 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 23:12:20] 2026-01-10 04:11:48,823 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 23:12:20] 2026-01-10 04:11:48,823 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 23:12:20] 2026-01-10 04:11:48,823 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 23:12:20] 2026-01-10 04:11:48,823 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 23:12:20] 2026-01-10 04:11:48,823 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 23:12:20] 2026-01-10 04:11:48,823 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 23:12:20] 2026-01-10 04:11:48,823 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 23:12:20] 2026-01-10 04:11:48,823 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 23:12:20] 2026-01-10 04:11:48,823 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 23:12:20] 2026-01-10 04:11:48,823 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 23:12:20] 2026-01-10 04:11:48,824 | INFO     | job 6963188497 has completed (purged errors)
[2026-01-09 23:12:20] 2026-01-10 04:11:48,824 | INFO     | overall cleanup function is called
[2026-01-09 23:12:20] 2026-01-10 04:11:49,832 | INFO     | --- collectZombieJob: --- 10, [3138675]
[2026-01-09 23:12:20] 2026-01-10 04:11:49,832 | INFO     | zombie collector waiting for pid 3138675
[2026-01-09 23:12:20] 2026-01-10 04:11:49,832 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 23:12:20] 2026-01-10 04:11:49,832 | INFO     | collected zombie processes
[2026-01-09 23:12:20] 2026-01-10 04:11:49,833 | INFO     | will attempt to kill all subprocesses of pid=3138675
[2026-01-09 23:12:20] 2026-01-10 04:11:50,152 | INFO     | process IDs to be killed: [3138675] (in reverse order)
[2026-01-09 23:12:20] 2026-01-10 04:11:50,259 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 23:12:20] 2026-01-10 04:11:50,260 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 23:12:20] 2026-01-10 04:11:50,274 | INFO     | did not find any defunct processes belonging to 3138675
[2026-01-09 23:12:20] 2026-01-10 04:11:50,293 | INFO     | did not find any defunct processes belonging to 3138675
[2026-01-09 23:12:20] 2026-01-10 04:11:50,293 | INFO     | ready for new job
[2026-01-09 23:12:20] 2026-01-10 04:11:50,293 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 23:12:20] 2026-01-10 04:11:50,296 | INFO     | ***************************************
[2026-01-09 23:12:20] 2026-01-10 04:11:50,296 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 23:12:20] 2026-01-10 04:11:50,296 | INFO     | ***************************************
[2026-01-09 23:12:20] 2026-01-10 04:11:50,296 | INFO     | 
[2026-01-09 23:12:20] 2026-01-10 04:11:50,300 | INFO     | architecture information:
[2026-01-09 23:12:20] 2026-01-10 04:11:50,300 | INFO     | executing command: cat /etc/os-release
[2026-01-09 23:12:20] 2026-01-10 04:11:50,318 | INFO     | cat /etc/os-release:
[2026-01-09 23:12:20] NAME="CentOS Linux"
[2026-01-09 23:12:20] VERSION="7 (Core)"
[2026-01-09 23:12:20] ID="centos"
[2026-01-09 23:12:20] ID_LIKE="rhel fedora"
[2026-01-09 23:12:20] VERSION_ID="7"
[2026-01-09 23:12:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 23:12:20] ANSI_COLOR="0;31"
[2026-01-09 23:12:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 23:12:20] HOME_URL="https://www.centos.org/"
[2026-01-09 23:12:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 23:12:20] 
[2026-01-09 23:12:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 23:12:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 23:12:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 23:12:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 23:12:20] 
[2026-01-09 23:12:20] 2026-01-10 04:11:50,319 | INFO     | ***************************************
[2026-01-09 23:12:20] 2026-01-10 04:11:50,822 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-09 23:12:20] 2026-01-10 04:11:50,873 | INFO     | sufficient remaining disk space (76477890560 B)
[2026-01-09 23:12:20] 2026-01-10 04:11:50,874 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 23:12:20] 2026-01-10 04:11:50,874 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 23:12:20] 2026-01-10 04:11:50,874 | INFO     | update_server=False
[2026-01-09 23:12:20] 2026-01-10 04:11:50,874 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 23:12:20] 2026-01-10 04:11:50,916 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 23:12:20] 2026-01-10 04:11:50,916 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 23:12:20] 2026-01-10 04:11:50,917 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:12:20] 2026-01-10 04:11:50,917 | INFO     | will abort loop
[2026-01-09 23:12:20] 2026-01-10 04:11:51,334 | INFO     | all payload control threads have been joined
[2026-01-09 23:12:20] 2026-01-10 04:11:51,453 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 23:12:20] 2026-01-10 04:11:51,513 | INFO     | all data control threads have been joined
[2026-01-09 23:12:20] 2026-01-10 04:11:51,880 | INFO     | [job] retrieve thread has finished
[2026-01-09 23:12:20] 2026-01-10 04:11:51,928 | INFO     | [job] job monitor thread has finished
[2026-01-09 23:12:20] 2026-01-10 04:11:51,950 | INFO     | all job control threads have been joined
[2026-01-09 23:12:20] 2026-01-10 04:11:52,148 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 23:12:20] 2026-01-10 04:11:52,198 | INFO     | [payload] failed_post thread has finished
[2026-01-09 23:12:20] 2026-01-10 04:11:52,238 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 23:12:20] 2026-01-10 04:11:52,340 | INFO     | [payload] control thread has finished
[2026-01-09 23:12:20] 2026-01-10 04:11:52,435 | INFO     | [job] validate thread has finished
[2026-01-09 23:12:20] 2026-01-10 04:11:52,519 | INFO     | [data] control thread has finished
[2026-01-09 23:12:20] 2026-01-10 04:11:52,807 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 23:12:20] 2026-01-10 04:11:52,956 | INFO     | [job] control thread has finished
[2026-01-09 23:12:20] 2026-01-10 04:11:52,983 | INFO     | [payload] validate_post thread has finished
[2026-01-09 23:12:20] 2026-01-10 04:11:53,160 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 23:12:20] 2026-01-10 04:11:53,252 | INFO     | [data] copytool_in thread has finished
[2026-01-09 23:12:20] 2026-01-10 04:11:53,270 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 23:12:20] 2026-01-10 04:11:53,815 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:12:20] 2026-01-10 04:11:54,155 | INFO     | [data] copytool_out thread has finished
[2026-01-09 23:12:20] 2026-01-10 04:11:54,821 | INFO     | [job] queue monitor thread has finished
[2026-01-09 23:12:20] 2026-01-10 04:11:55,462 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 23:12:20] 2026-01-10 04:12:07,634 | INFO     | [monitor] cgroup control has ended
[2026-01-09 23:12:20] 2026-01-10 04:12:09,685 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139647409669952)>', '<ExcThread(monitor, started 139646960920320)>']
[2026-01-09 23:12:20] 2026-01-10 04:12:14,711 | INFO     | all workflow threads have been joined
[2026-01-09 23:12:20] 2026-01-10 04:12:14,711 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 23:12:20] 2026-01-10 04:12:14,712 | INFO     | traces error code: 0
[2026-01-09 23:12:20] 2026-01-10 04:12:14,712 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 23:12:20] 2026-01-10 04:12:20,583 | INFO     | PID=3131681 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 23:12:20] 2026-01-10 04:12:20,584 | INFO     | .. there are 8 such processes running
[2026-01-09 23:12:20] 2026-01-10 04:12:20,585 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 23:12:20] 2026-01-10 04:12:20,585 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 23:12:20] 2026-01-10 04:12:20,585 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 23:12:20] 2026-01-10 04:12:20,585 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 23:12:20] 2026-01-10 04:12:20,585 | INFO     | [monitor] control thread has ended
[2026-01-09 23:12:20] 2026-01-10 04:12:20,715 [wrapper] ==== pilot stdout END ====
[2026-01-09 23:12:20] 2026-01-10 04:12:20,717 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 23:12:20] 2026-01-10 04:12:20,719 [wrapper] pilotpid: 3131681
[2026-01-09 23:12:20] 2026-01-10 04:12:20,721 [wrapper] Pilot exit status: 0
[2026-01-09 23:12:20] 2026-01-10 04:12:20,744 [wrapper] pandaids: 6963188497
[2026-01-09 23:12:20] 2026-01-10 04:12:20,806 [wrapper] cleanup supervisor_pilot 3803416 3131682
[2026-01-09 23:12:20] 2026-01-10 04:12:20,809 [wrapper] Test setup, not cleaning
[2026-01-09 23:12:20] 2026-01-10 04:12:20,811 [wrapper] apfmon messages muted
[2026-01-09 23:12:20] 2026-01-10 04:12:20,814 [wrapper] ==== wrapper stdout END ====
[2026-01-09 23:12:20] 2026-01-10 04:12:20,816 [wrapper] ==== wrapper stderr END ====
[2026-01-09 23:12:20]  *** Error codes and diagnostics ***
[2026-01-09 23:12:20]     "exeErrorCode": 0,
[2026-01-09 23:12:20]     "exeErrorDiag": "",
[2026-01-09 23:12:20]     "pilotErrorCode": 0,
[2026-01-09 23:12:20]     "pilotErrorDiag": "",
[2026-01-09 23:12:20]  *** Listing of results directory ***
[2026-01-09 23:12:20] total 445376
[2026-01-09 23:12:20] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 23:12:20] -rwx------. 1 boincer umatlas     36322 Jan  8 23:25 runpilot2-wrapper.sh
[2026-01-09 23:12:20] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 23:29 queuedata.json
[2026-01-09 23:12:20] -rw-r--r--. 1 boincer umatlas       100 Jan  9 17:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 23:12:20] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 17:27 run_atlas
[2026-01-09 23:12:20] -rw-r--r--. 1 boincer umatlas       105 Jan  9 17:27 job.xml
[2026-01-09 23:12:20] -rw-r--r--. 2 boincer umatlas 226520786 Jan  9 17:27 EVNT.47898824._001442.pool.root.1
[2026-01-09 23:12:20] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 17:27 start_atlas.sh
[2026-01-09 23:12:20] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 17:27 shared
[2026-01-09 23:12:20] -rw-r--r--. 2 boincer umatlas    592398 Jan  9 17:27 input.tar.gz
[2026-01-09 23:12:20] -rw-r--r--. 1 boincer umatlas         0 Jan  9 17:27 boinc_lockfile
[2026-01-09 23:12:20] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 17:27 pandaJob.out
[2026-01-09 23:12:20] -rw-------. 1 boincer umatlas        57 Jan  9 17:27 setup.sh.local
[2026-01-09 23:12:20] -rw-------. 1 boincer umatlas    989375 Jan  9 17:27 agis_schedconf.cvmfs.json
[2026-01-09 23:12:20] drwx------. 5 boincer umatlas      4096 Jan  9 17:27 pilot3
[2026-01-09 23:12:20] -rw-------. 1 boincer umatlas 219041125 Jan  9 23:10 HITS.47898826._037584.pool.root.1
[2026-01-09 23:12:20] -rw-r--r--. 1 boincer umatlas       531 Jan  9 23:10 boinc_task_state.xml
[2026-01-09 23:12:20] -rw-r--r--. 1 boincer umatlas      6843 Jan  9 23:10 init_data.xml
[2026-01-09 23:12:20] -rw-------. 1 boincer umatlas      1039 Jan  9 23:11 memory_monitor_summary.json
[2026-01-09 23:12:20] -rw-------. 1 boincer umatlas   1516240 Jan  9 23:11 agis_ddmendpoints.agis.ALL.json
[2026-01-09 23:12:20] -rw-------. 1 boincer umatlas    546400 Jan  9 23:11 log.47898826._037584.job.log.tgz.1
[2026-01-09 23:12:20] -rw-------. 1 boincer umatlas      7818 Jan  9 23:11 heartbeat.json
[2026-01-09 23:12:20] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 23:12 boinc_mmap_file
[2026-01-09 23:12:20] -rw-------. 1 boincer umatlas        95 Jan  9 23:12 pilot_heartbeat.json
[2026-01-09 23:12:20] -rw-------. 1 boincer umatlas       822 Jan  9 23:12 pilotlog.txt
[2026-01-09 23:12:20] -rw-r--r--. 1 boincer umatlas        28 Jan  9 23:12 wrapper_checkpoint.txt
[2026-01-09 23:12:20] -rw-------. 1 boincer umatlas   2750192 Jan  9 23:12 log.47898826._037584.job.log.1
[2026-01-09 23:12:20] -rw-------. 1 boincer umatlas       357 Jan  9 23:12 output.list
[2026-01-09 23:12:20] -rw-r--r--. 1 boincer umatlas       620 Jan  9 23:12 runtime_log
[2026-01-09 23:12:20] -rw-------. 1 boincer umatlas   3317760 Jan  9 23:12 result.tar.gz
[2026-01-09 23:12:20] -rw-r--r--. 1 boincer umatlas      9348 Jan  9 23:12 runtime_log.err
[2026-01-09 23:12:20] -rw-------. 1 boincer umatlas       656 Jan  9 23:12 IWONDm8EJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmt8gKDmEl0Oun.diag
[2026-01-09 23:12:20] -rw-r--r--. 1 boincer umatlas     21413 Jan  9 23:12 stderr.txt
[2026-01-09 23:12:21] HITS file was successfully produced:
[2026-01-09 23:12:21] -rw-------. 1 boincer umatlas 219041125 Jan  9 23:10 shared/HITS.pool.root.1
[2026-01-09 23:12:21]  *** Contents of shared directory: ***
[2026-01-09 23:12:21] total 438960
[2026-01-09 23:12:21] -rw-r--r--. 2 boincer umatlas 226520786 Jan  9 17:27 ATLAS.root_0
[2026-01-09 23:12:21] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 17:27 start_atlas.sh
[2026-01-09 23:12:21] -rw-r--r--. 2 boincer umatlas    592398 Jan  9 17:27 input.tar.gz
[2026-01-09 23:12:21] -rw-------. 1 boincer umatlas 219041125 Jan  9 23:10 HITS.pool.root.1
[2026-01-09 23:12:21] -rw-------. 1 boincer umatlas   3317760 Jan  9 23:12 result.tar.gz
23:12:22 (3128017): run_atlas exited; CPU time 55307.536816
23:12:22 (3128017): called boinc_finish(0)

</stderr_txt>
]]>

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