Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:19:28 (3574527): wrapper (7.7.26015): starting
16:19:28 (3574527): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 16:19:28] Arguments: --nthreads 8
[2026-01-09 16:19:28] Threads: 8
[2026-01-09 16:19:28] Checking for CVMFS
[2026-01-09 16:19:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 16:19:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 16:19:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 16:19:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 16:19:30] 2.13.3.0 12548 93939 390652 154957 1 57 33471620 40960000 14137 16776704 34 389415900 99.608 403657050 36436 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 16:19:30] CVMFS is ok
[2026-01-09 16:19:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 16:19:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 16:19:30] Further information can be found at the LHC@home message board.
[2026-01-09 16:19:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 16:19:30] Checking for apptainer binary...
[2026-01-09 16:19:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 16:19:30] Running /usr/bin/apptainer --version
[2026-01-09 16:19:30] apptainer version 1.4.5-2.el9
[2026-01-09 16:19:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 16:19:31] c7-11-12.aglt2.org
[2026-01-09 16:19:31] apptainer works
[2026-01-09 16:19:31] Set ATHENA_PROC_NUMBER=8
[2026-01-09 16:19:31] Set ATHENA_CORE_NUMBER=8
[2026-01-09 16:19:31] Starting ATLAS job with PandaID=6963192120
[2026-01-09 16:19:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:00:06 (3574527): BOINC client no longer exists - exiting
18:00:06 (3574527): timer handler: client dead, exiting
18:00:50 (3836437): wrapper (7.7.26015): starting
18:00:50 (3836437): wrapper: running run_atlas (--nthreads 10)
[2026-01-09 18:00:50] Arguments: --nthreads 10
[2026-01-09 18:00:50] Threads: 10
[2026-01-09 18:00:50] This job has been restarted, cleaning up previous attempt
[2026-01-09 18:00:50] Checking for CVMFS
[2026-01-09 18:00:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 18:00:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 18:00:50] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 18:00:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 18:00:51] 2.13.3.0 12548 94040 388536 154959 0 179 33623331 40960001 12308 16776704 34 389679489 99.609 403660033 36436 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 18:00:51] CVMFS is ok
[2026-01-09 18:00:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 18:00:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 18:00:51] Further information can be found at the LHC@home message board.
[2026-01-09 18:00:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 18:00:51] Checking for apptainer binary...
[2026-01-09 18:00:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 18:00:51] Running /usr/bin/apptainer --version
[2026-01-09 18:00:51] apptainer version 1.4.5-2.el9
[2026-01-09 18:00:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 18:00:51] c7-11-12.aglt2.org
[2026-01-09 18:00:51] apptainer works
[2026-01-09 18:00:51] Set ATHENA_PROC_NUMBER=10
[2026-01-09 18:00:51] Set ATHENA_CORE_NUMBER=10
[2026-01-09 18:00:51] Starting ATLAS job with PandaID=6963192120
[2026-01-09 18:00:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 21:24:30]  *** The last 200 lines of the pilot log: ***
[2026-01-09 21:24:30] 2026-01-10 02:23:37,517 | INFO     | fitting pss+swap vs Time
[2026-01-09 21:24:30] 2026-01-10 02:23:37,520 | INFO     | sum of square deviations: 2443670815.9497614
[2026-01-09 21:24:30] 2026-01-10 02:23:37,521 | INFO     | sum of deviations: 33856367075.115593
[2026-01-09 21:24:30] 2026-01-10 02:23:37,521 | INFO     | mean x: 1768005729.361809
[2026-01-09 21:24:30] 2026-01-10 02:23:37,521 | INFO     | mean y: 2599777.567839196
[2026-01-09 21:24:30] 2026-01-10 02:23:37,521 | INFO     | intersect: -24492618880.153152
[2026-01-09 21:24:30] 2026-01-10 02:23:37,521 | INFO     | chi2: 1.1453051015094597
[2026-01-09 21:24:30] 2026-01-10 02:23:37,522 | INFO     | sum of square deviations: 2264029195.3608346
[2026-01-09 21:24:30] 2026-01-10 02:23:37,522 | INFO     | sum of deviations: 32498655536.412365
[2026-01-09 21:24:30] 2026-01-10 02:23:37,523 | INFO     | mean x: 1768005576.8453608
[2026-01-09 21:24:30] 2026-01-10 02:23:37,523 | INFO     | mean y: 2598631.680412371
[2026-01-09 21:24:30] 2026-01-10 02:23:37,523 | INFO     | intersect: -25375962893.095314
[2026-01-09 21:24:30] 2026-01-10 02:23:37,523 | INFO     | chi2: 1.145267290864368
[2026-01-09 21:24:30] 2026-01-10 02:23:37,523 | INFO     | current chi2=1.145267290864368 (change=0.0033013600517409797 %)
[2026-01-09 21:24:30] 2026-01-10 02:23:37,523 | INFO     | right removable region: 193
[2026-01-09 21:24:30] 2026-01-10 02:23:37,523 | INFO     | sum of square deviations: 2264045487.7783375
[2026-01-09 21:24:30] 2026-01-10 02:23:37,545 | INFO     | sum of deviations: 7895364266.45361
[2026-01-09 21:24:30] 2026-01-10 02:23:37,546 | INFO     | mean x: 1768005881.871134
[2026-01-09 21:24:30] 2026-01-10 02:23:37,546 | INFO     | mean y: 2621557.93814433
[2026-01-09 21:24:30] 2026-01-10 02:23:37,546 | INFO     | intersect: -6162912897.070925
[2026-01-09 21:24:30] 2026-01-10 02:23:37,546 | INFO     | chi2: 0.010794141950298547
[2026-01-09 21:24:30] 2026-01-10 02:23:37,546 | INFO     | current chi2=0.010794141950298547 (change=99.05753131317826 %)
[2026-01-09 21:24:30] 2026-01-10 02:23:37,546 | INFO     | sum of square deviations: 2093443584.571424
[2026-01-09 21:24:30] 2026-01-10 02:23:37,547 | INFO     | sum of deviations: 7608548725.571424
[2026-01-09 21:24:30] 2026-01-10 02:23:37,547 | INFO     | mean x: 1768006034.3809524
[2026-01-09 21:24:30] 2026-01-10 02:23:37,547 | INFO     | mean y: 2621833.380952381
[2026-01-09 21:24:30] 2026-01-10 02:23:37,547 | INFO     | intersect: -6423135306.114978
[2026-01-09 21:24:30] 2026-01-10 02:23:37,548 | INFO     | chi2: 0.004583159777621242
[2026-01-09 21:24:30] 2026-01-10 02:23:37,548 | INFO     | current chi2=0.004583159777621242 (change=57.54030474377373 %)
[2026-01-09 21:24:30] 2026-01-10 02:23:37,548 | INFO     | sum of square deviations: 1931632543.8260844
[2026-01-09 21:24:30] 2026-01-10 02:23:37,571 | INFO     | sum of deviations: 5757357401.217394
[2026-01-09 21:24:30] 2026-01-10 02:23:37,571 | INFO     | mean x: 1768006186.8913043
[2026-01-09 21:24:30] 2026-01-10 02:23:37,571 | INFO     | mean y: 2623576.7608695654
[2026-01-09 21:24:30] 2026-01-10 02:23:37,571 | INFO     | intersect: -5267034743.104997
[2026-01-09 21:24:30] 2026-01-10 02:23:37,572 | INFO     | chi2: 0.0029943719136901175
[2026-01-09 21:24:30] 2026-01-10 02:23:37,572 | INFO     | current chi2=0.0029943719136901175 (change=34.66577516430684 %)
[2026-01-09 21:24:30] 2026-01-10 02:23:37,572 | INFO     | sum of square deviations: 1778379803.0391102
[2026-01-09 21:24:30] 2026-01-10 02:23:37,573 | INFO     | sum of deviations: 4478811021.379889
[2026-01-09 21:24:30] 2026-01-10 02:23:37,573 | INFO     | mean x: 1768006339.4022346
[2026-01-09 21:24:30] 2026-01-10 02:23:37,573 | INFO     | mean y: 2624849.0502793295
[2026-01-09 21:24:30] 2026-01-10 02:23:37,573 | INFO     | intersect: -4450060828.807756
[2026-01-09 21:24:30] 2026-01-10 02:23:37,573 | INFO     | chi2: 0.0022814682863913065
[2026-01-09 21:24:30] 2026-01-10 02:23:37,574 | INFO     | current chi2=0.0022814682863913065 (change=23.80811895942022 %)
[2026-01-09 21:24:30] 2026-01-10 02:23:37,574 | INFO     | left removable region: 40
[2026-01-09 21:24:30] 2026-01-10 02:23:37,574 | INFO     | sum of square deviations: 1110453949.05882
[2026-01-09 21:24:30] 2026-01-10 02:23:37,579 | INFO     | sum of deviations: 1684539488.1176476
[2026-01-09 21:24:30] 2026-01-10 02:23:37,579 | INFO     | mean x: 1768006766.4117646
[2026-01-09 21:24:30] 2026-01-10 02:23:37,579 | INFO     | mean y: 2626880.6013071896
[2026-01-09 21:24:30] 2026-01-10 02:23:37,579 | INFO     | intersect: -2679408890.2688756
[2026-01-09 21:24:30] 2026-01-10 02:23:37,579 | INFO     | chi2: 0.0006251609959037772
[2026-01-09 21:24:30] 2026-01-10 02:23:37,579 | INFO     | current memory leak: 1.52 B/s (using 153 data points, chi2=0.00)
[2026-01-09 21:24:30] 2026-01-10 02:23:37,580 | INFO     | could have reported an average CPU frequency of 3287 MHz (10 samples)
[2026-01-09 21:24:30] 2026-01-10 02:23:37,580 | INFO     | ..............................
[2026-01-09 21:24:30] 2026-01-10 02:23:37,580 | INFO     | . Timing measurements:
[2026-01-09 21:24:30] 2026-01-10 02:23:37,580 | INFO     | . get job = 0 s
[2026-01-09 21:24:30] 2026-01-10 02:23:37,580 | INFO     | . initial setup = 0 s
[2026-01-09 21:24:30] 2026-01-10 02:23:37,580 | INFO     | . payload setup = 6 s
[2026-01-09 21:24:30] 2026-01-10 02:23:37,580 | INFO     | . stage-in = 0 s
[2026-01-09 21:24:30] 2026-01-10 02:23:37,580 | INFO     | . payload execution = 12116 s
[2026-01-09 21:24:30] 2026-01-10 02:23:37,580 | INFO     | . stage-out = 3 s
[2026-01-09 21:24:30] 2026-01-10 02:23:37,580 | INFO     | . log creation = 0 s
[2026-01-09 21:24:30] 2026-01-10 02:23:37,581 | INFO     | ..............................
[2026-01-09 21:24:30] 2026-01-10 02:23:37,672 | INFO     | 
[2026-01-09 21:24:30] 2026-01-10 02:23:37,672 | INFO     | job summary report
[2026-01-09 21:24:30] 2026-01-10 02:23:37,672 | INFO     | --------------------------------------------------
[2026-01-09 21:24:30] 2026-01-10 02:23:37,672 | INFO     | PanDA job id: 6963192120
[2026-01-09 21:24:30] 2026-01-10 02:23:37,672 | INFO     | task id: 47898826
[2026-01-09 21:24:30] 2026-01-10 02:23:37,672 | INFO     | errors: (none)
[2026-01-09 21:24:30] 2026-01-10 02:23:37,672 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 21:24:30] 2026-01-10 02:23:37,672 | INFO     | pilot state: finished 
[2026-01-09 21:24:30] 2026-01-10 02:23:37,672 | INFO     | transexitcode: 0
[2026-01-09 21:24:30] 2026-01-10 02:23:37,672 | INFO     | exeerrorcode: 0
[2026-01-09 21:24:30] 2026-01-10 02:23:37,672 | INFO     | exeerrordiag: 
[2026-01-09 21:24:30] 2026-01-10 02:23:37,672 | INFO     | exitcode: 0
[2026-01-09 21:24:30] 2026-01-10 02:23:37,672 | INFO     | exitmsg: OK
[2026-01-09 21:24:30] 2026-01-10 02:23:37,672 | INFO     | cpuconsumptiontime: 45349 s
[2026-01-09 21:24:30] 2026-01-10 02:23:37,672 | INFO     | nevents: 400
[2026-01-09 21:24:30] 2026-01-10 02:23:37,672 | INFO     | neventsw: 0
[2026-01-09 21:24:30] 2026-01-10 02:23:37,673 | INFO     | pid: 3866294
[2026-01-09 21:24:30] 2026-01-10 02:23:37,673 | INFO     | pgrp: 3866294
[2026-01-09 21:24:30] 2026-01-10 02:23:37,673 | INFO     | corecount: 10
[2026-01-09 21:24:30] 2026-01-10 02:23:37,673 | INFO     | event service: False
[2026-01-09 21:24:30] 2026-01-10 02:23:37,673 | INFO     | sizes: {0: 2283800, 1: 2283999, 5: 2284261, 11: 2284317, 12126: 2314241, 12130: 2323423, 12141: 2323561}
[2026-01-09 21:24:30] 2026-01-10 02:23:37,673 | INFO     | --------------------------------------------------
[2026-01-09 21:24:30] 2026-01-10 02:23:37,673 | INFO     | 
[2026-01-09 21:24:30] 2026-01-10 02:23:37,673 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-09 21:24:30] 2026-01-10 02:23:37,687 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 21:24:30] 2026-01-10 02:23:37,687 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 21:24:30] 2026-01-10 02:23:37,687 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 21:24:30] 2026-01-10 02:23:37,687 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 21:24:30] 2026-01-10 02:23:37,687 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 21:24:30] 2026-01-10 02:23:37,688 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 21:24:30] 2026-01-10 02:23:37,688 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 21:24:30] 2026-01-10 02:23:37,688 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 21:24:30] 2026-01-10 02:23:37,688 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 21:24:30] 2026-01-10 02:23:37,688 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 21:24:30] 2026-01-10 02:23:37,688 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 21:24:30] 2026-01-10 02:23:37,688 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 21:24:30] 2026-01-10 02:23:37,688 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 21:24:30] 2026-01-10 02:23:37,688 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 21:24:30] 2026-01-10 02:23:37,688 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 21:24:30] 2026-01-10 02:23:37,688 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 21:24:30] 2026-01-10 02:23:37,688 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 21:24:30] 2026-01-10 02:23:37,688 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 21:24:30] 2026-01-10 02:23:37,688 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 21:24:30] 2026-01-10 02:23:37,688 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 21:24:30] 2026-01-10 02:23:37,688 | INFO     | job 6963192120 has completed (purged errors)
[2026-01-09 21:24:30] 2026-01-10 02:23:37,688 | INFO     | overall cleanup function is called
[2026-01-09 21:24:30] 2026-01-10 02:23:38,697 | INFO     | --- collectZombieJob: --- 10, [3866294]
[2026-01-09 21:24:30] 2026-01-10 02:23:38,697 | INFO     | zombie collector waiting for pid 3866294
[2026-01-09 21:24:30] 2026-01-10 02:23:38,697 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 21:24:30] 2026-01-10 02:23:38,697 | INFO     | collected zombie processes
[2026-01-09 21:24:30] 2026-01-10 02:23:38,697 | INFO     | will attempt to kill all subprocesses of pid=3866294
[2026-01-09 21:24:30] 2026-01-10 02:23:38,953 | INFO     | process IDs to be killed: [3866294] (in reverse order)
[2026-01-09 21:24:30] 2026-01-10 02:23:39,050 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 21:24:30] 2026-01-10 02:23:39,052 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 21:24:30] 2026-01-10 02:23:39,073 | INFO     | did not find any defunct processes belonging to 3866294
[2026-01-09 21:24:30] 2026-01-10 02:23:39,094 | INFO     | did not find any defunct processes belonging to 3866294
[2026-01-09 21:24:30] 2026-01-10 02:23:39,094 | INFO     | ready for new job
[2026-01-09 21:24:30] 2026-01-10 02:23:39,094 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 21:24:30] 2026-01-10 02:23:39,099 | INFO     | ***************************************
[2026-01-09 21:24:30] 2026-01-10 02:23:39,099 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 21:24:30] 2026-01-10 02:23:39,099 | INFO     | ***************************************
[2026-01-09 21:24:30] 2026-01-10 02:23:39,099 | INFO     | 
[2026-01-09 21:24:30] 2026-01-10 02:23:39,106 | INFO     | architecture information:
[2026-01-09 21:24:30] 2026-01-10 02:23:39,107 | INFO     | executing command: cat /etc/os-release
[2026-01-09 21:24:30] 2026-01-10 02:23:39,236 | INFO     | cat /etc/os-release:
[2026-01-09 21:24:30] NAME="CentOS Linux"
[2026-01-09 21:24:30] VERSION="7 (Core)"
[2026-01-09 21:24:30] ID="centos"
[2026-01-09 21:24:30] ID_LIKE="rhel fedora"
[2026-01-09 21:24:30] VERSION_ID="7"
[2026-01-09 21:24:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 21:24:30] ANSI_COLOR="0;31"
[2026-01-09 21:24:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 21:24:30] HOME_URL="https://www.centos.org/"
[2026-01-09 21:24:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 21:24:30] 
[2026-01-09 21:24:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 21:24:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 21:24:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 21:24:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 21:24:30] 
[2026-01-09 21:24:30] 2026-01-10 02:23:39,236 | INFO     | ***************************************
[2026-01-09 21:24:30] 2026-01-10 02:23:39,740 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-09 21:24:30] 2026-01-10 02:23:39,886 | INFO     | sufficient remaining disk space (84105232384 B)
[2026-01-09 21:24:30] 2026-01-10 02:23:39,886 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 21:24:30] 2026-01-10 02:23:39,886 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 21:24:30] 2026-01-10 02:23:39,886 | INFO     | update_server=False
[2026-01-09 21:24:30] 2026-01-10 02:23:39,886 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 21:24:30] 2026-01-10 02:23:39,924 | INFO     | all payload control threads have been joined
[2026-01-09 21:24:30] 2026-01-10 02:23:40,019 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 21:24:30] 2026-01-10 02:23:40,019 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 21:24:30] 2026-01-10 02:23:40,019 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:24:30] 2026-01-10 02:23:40,019 | INFO     | will abort loop
[2026-01-09 21:24:30] 2026-01-10 02:23:40,033 | INFO     | all data control threads have been joined
[2026-01-09 21:24:30] 2026-01-10 02:23:40,298 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 21:24:30] 2026-01-10 02:23:40,676 | INFO     | all job control threads have been joined
[2026-01-09 21:24:30] 2026-01-10 02:23:40,893 | INFO     | [job] retrieve thread has finished
[2026-01-09 21:24:30] 2026-01-10 02:23:40,930 | INFO     | [payload] control thread has finished
[2026-01-09 21:24:30] 2026-01-10 02:23:41,025 | INFO     | [job] job monitor thread has finished
[2026-01-09 21:24:30] 2026-01-10 02:23:41,049 | INFO     | [data] control thread has finished
[2026-01-09 21:24:30] 2026-01-10 02:23:41,469 | INFO     | [payload] failed_post thread has finished
[2026-01-09 21:24:30] 2026-01-10 02:23:41,681 | INFO     | [job] control thread has finished
[2026-01-09 21:24:30] 2026-01-10 02:23:41,690 | INFO     | [job] validate thread has finished
[2026-01-09 21:24:30] 2026-01-10 02:23:41,700 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 21:24:30] 2026-01-10 02:23:41,711 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 21:24:30] 2026-01-10 02:23:42,125 | INFO     | [data] copytool_in thread has finished
[2026-01-09 21:24:30] 2026-01-10 02:23:42,139 | INFO     | [payload] validate_post thread has finished
[2026-01-09 21:24:30] 2026-01-10 02:23:42,288 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 21:24:30] 2026-01-10 02:23:42,305 | INFO     | [data] copytool_out thread has finished
[2026-01-09 21:24:30] 2026-01-10 02:23:42,644 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 21:24:30] 2026-01-10 02:23:42,685 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:24:30] 2026-01-10 02:23:43,691 | INFO     | [job] queue monitor thread has finished
[2026-01-09 21:24:30] 2026-01-10 02:23:46,653 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 21:24:30] 2026-01-10 02:23:50,239 | INFO     | job.realtimelogging is not enabled
[2026-01-09 21:24:30] 2026-01-10 02:23:51,246 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 21:24:30] 2026-01-10 02:24:09,194 | INFO     | PID=3847404 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 21:24:30] 2026-01-10 02:24:09,196 | INFO     | .. there are 11 such processes running
[2026-01-09 21:24:30] 2026-01-10 02:24:09,196 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 21:24:30] 2026-01-10 02:24:09,196 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 21:24:30] 2026-01-10 02:24:09,196 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 21:24:30] 2026-01-10 02:24:21,999 | INFO     | [monitor] cgroup control has ended
[2026-01-09 21:24:30] 2026-01-10 02:24:23,502 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140343601203008)>', '<ExcThread(monitor, started 140342745622272)>']
[2026-01-09 21:24:30] 2026-01-10 02:24:24,287 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 21:24:30] 2026-01-10 02:24:24,287 | INFO     | [monitor] control thread has ended
[2026-01-09 21:24:30] 2026-01-10 02:24:28,530 | INFO     | all workflow threads have been joined
[2026-01-09 21:24:30] 2026-01-10 02:24:28,530 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 21:24:30] 2026-01-10 02:24:28,530 | INFO     | traces error code: 0
[2026-01-09 21:24:30] 2026-01-10 02:24:28,530 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 21:24:30] 2026-01-10 02:24:28,872 [wrapper] ==== pilot stdout END ====
[2026-01-09 21:24:30] 2026-01-10 02:24:28,877 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 21:24:30] 2026-01-10 02:24:28,879 [wrapper] pilotpid: 3847404
[2026-01-09 21:24:30] 2026-01-10 02:24:28,881 [wrapper] Pilot exit status: 0
[2026-01-09 21:24:30] 2026-01-10 02:24:28,953 [wrapper] pandaids: 6963192120 6963192120
[2026-01-09 21:24:30] 2026-01-10 02:24:29,818 [wrapper] cleanup supervisor_pilot   55414 3847405
[2026-01-09 21:24:30] 2026-01-10 02:24:29,857 [wrapper] Test setup, not cleaning
[2026-01-09 21:24:30] 2026-01-10 02:24:29,901 [wrapper] apfmon messages muted
[2026-01-09 21:24:30] 2026-01-10 02:24:29,944 [wrapper] ==== wrapper stdout END ====
[2026-01-09 21:24:30] 2026-01-10 02:24:29,960 [wrapper] ==== wrapper stderr END ====
[2026-01-09 21:24:30]  *** Error codes and diagnostics ***
[2026-01-09 21:24:30]     "exeErrorCode": 0,
[2026-01-09 21:24:30]     "exeErrorDiag": "",
[2026-01-09 21:24:30]     "pilotErrorCode": 0,
[2026-01-09 21:24:30]     "pilotErrorDiag": "",
[2026-01-09 21:24:30]  *** Listing of results directory ***
[2026-01-09 21:24:30] total 665496
[2026-01-09 21:24:30] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 21:24:30] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 21:24:30] -rwx------. 1 boincer umatlas     36322 Jan  8 23:25 runpilot2-wrapper.sh
[2026-01-09 21:24:30] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 23:30 queuedata.json
[2026-01-09 21:24:30] -rw-r--r--. 1 boincer umatlas       100 Jan  9 16:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 21:24:30] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 16:19 run_atlas
[2026-01-09 21:24:30] -rw-r--r--. 1 boincer umatlas       105 Jan  9 16:19 job.xml
[2026-01-09 21:24:30] -rw-r--r--. 3 boincer umatlas 226789598 Jan  9 16:19 EVNT.47898824._001498.pool.root.1
[2026-01-09 21:24:30] -rw-r--r--. 3 boincer umatlas 226789598 Jan  9 16:19 ATLAS.root_0
[2026-01-09 21:24:30] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 16:19 start_atlas.sh
[2026-01-09 21:24:30] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 16:19 shared
[2026-01-09 21:24:30] -rw-r--r--. 2 boincer umatlas    592398 Jan  9 16:19 input.tar.gz
[2026-01-09 21:24:30] -rw-r--r--. 1 boincer umatlas         0 Jan  9 16:19 boinc_lockfile
[2026-01-09 21:24:30] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 18:00 pandaJob.out
[2026-01-09 21:24:30] -rw-------. 1 boincer umatlas        57 Jan  9 18:00 setup.sh.local
[2026-01-09 21:24:30] -rw-------. 1 boincer umatlas    989375 Jan  9 18:01 agis_schedconf.cvmfs.json
[2026-01-09 21:24:30] -rw-r--r--. 1 boincer umatlas      6902 Jan  9 21:20 init_data.xml
[2026-01-09 21:24:30] -rw-------. 1 boincer umatlas 219689839 Jan  9 21:22 HITS.47898826._038988.pool.root.1
[2026-01-09 21:24:30] -rw-r--r--. 1 boincer umatlas       530 Jan  9 21:22 boinc_task_state.xml
[2026-01-09 21:24:30] -rw-------. 1 boincer umatlas      1028 Jan  9 21:23 memory_monitor_summary.json
[2026-01-09 21:24:30] -rw-------. 1 boincer umatlas   1516240 Jan  9 21:23 agis_ddmendpoints.agis.ALL.json
[2026-01-09 21:24:30] -rw-------. 1 boincer umatlas    465273 Jan  9 21:23 log.47898826._038988.job.log.tgz.1
[2026-01-09 21:24:30] -rw-------. 1 boincer umatlas        96 Jan  9 21:23 pilot_heartbeat.json
[2026-01-09 21:24:30] -rw-------. 1 boincer umatlas      7772 Jan  9 21:23 heartbeat.json
[2026-01-09 21:24:30] -rw-r--r--. 1 boincer umatlas        28 Jan  9 21:24 wrapper_checkpoint.txt
[2026-01-09 21:24:30] -rw-------. 1 boincer umatlas      5082 Jan  9 21:24 pilotlog.txt
[2026-01-09 21:24:30] -rw-------. 1 boincer umatlas   1671354 Jan  9 21:24 log.47898826._038988.job.log.1
[2026-01-09 21:24:30] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 21:24 boinc_mmap_file
[2026-01-09 21:24:30] -rw-------. 1 boincer umatlas       357 Jan  9 21:24 output.list
[2026-01-09 21:24:30] -rw-r--r--. 1 boincer umatlas       620 Jan  9 21:24 runtime_log
[2026-01-09 21:24:30] -rw-------. 1 boincer umatlas   2160640 Jan  9 21:24 result.tar.gz
[2026-01-09 21:24:30] -rw-r--r--. 1 boincer umatlas      9430 Jan  9 21:24 runtime_log.err
[2026-01-09 21:24:30] -rw-------. 1 boincer umatlas       781 Jan  9 21:24 0kXKDmZFJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDNmKDmwIYMPo.diag
[2026-01-09 21:24:30] -rw-r--r--. 1 boincer umatlas     23326 Jan  9 21:24 stderr.txt
[2026-01-09 21:24:30] HITS file was successfully produced:
[2026-01-09 21:24:30] -rw-------. 1 boincer umatlas 219689839 Jan  9 21:22 shared/HITS.pool.root.1
[2026-01-09 21:24:30]  *** Contents of shared directory: ***
[2026-01-09 21:24:30] total 438732
[2026-01-09 21:24:30] -rw-r--r--. 3 boincer umatlas 226789598 Jan  9 16:19 ATLAS.root_0
[2026-01-09 21:24:30] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 16:19 start_atlas.sh
[2026-01-09 21:24:30] -rw-r--r--. 2 boincer umatlas    592398 Jan  9 16:19 input.tar.gz
[2026-01-09 21:24:30] -rw-------. 1 boincer umatlas 219689839 Jan  9 21:22 HITS.pool.root.1
[2026-01-09 21:24:30] -rw-------. 1 boincer umatlas   2160640 Jan  9 21:24 result.tar.gz
21:24:31 (3836437): run_atlas exited; CPU time 45536.187608
21:24:31 (3836437): called boinc_finish(0)

</stderr_txt>
]]>

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