Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:01:04 (3150): wrapper (7.7.26015): starting
15:01:04 (3150): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 15:01:04] Arguments: --nthreads 12
[2026-01-09 15:01:04] Threads: 12
[2026-01-09 15:01:04] Checking for CVMFS
[2026-01-09 15:01:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 15:01:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 15:01:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 15:01:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 15:01:04] 2.11.2.0 28623 344119 94980 154955 3 58 16983318 20275200 1 130560 4 147907519 99.952 19688011 15890 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 15:01:04] CVMFS is ok
[2026-01-09 15:01:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 15:01:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 15:01:04] Further information can be found at the LHC@home message board.
[2026-01-09 15:01:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 15:01:04] Checking for apptainer binary...
[2026-01-09 15:01:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 15:01:04] Running /usr/bin/apptainer --version
[2026-01-09 15:01:04] apptainer version 1.3.2-1.el7
[2026-01-09 15:01:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 15:01:05] c-205-20.aglt2.org
[2026-01-09 15:01:05] apptainer works
[2026-01-09 15:01:05] Set ATHENA_PROC_NUMBER=12
[2026-01-09 15:01:05] Set ATHENA_CORE_NUMBER=12
[2026-01-09 15:01:05] Starting ATLAS job with PandaID=6963193610
[2026-01-09 15:01:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 16:43:37]  *** The last 200 lines of the pilot log: ***
[2026-01-09 16:43:37] 2026-01-09 21:42:29,459 | INFO     | transferring file log.47898826._039083.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6963193610/log.47898826._039083.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-09 16:43:37] 2026-01-09 21:42:29,459 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6963193610/log.47898826._039083.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898826._039083.job
[2026-01-09 16:43:37] 2026-01-09 21:42:29,480 | INFO     | adding to output.list: log.47898826._039083.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/64/a3/log.47898826._039083.job.log.tg
[2026-01-09 16:43:37] 2026-01-09 21:42:29,481 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-09 16:43:37] 2026-01-09 21:42:29,481 | INFO     | summary of transferred files:
[2026-01-09 16:43:37] 2026-01-09 21:42:29,481 | INFO     |  -- lfn=log.47898826._039083.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 16:43:37] 2026-01-09 21:42:29,482 | INFO     | stage-out finished correctly
[2026-01-09 16:43:37] 2026-01-09 21:42:29,563 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 16:43:37] 2026-01-09 21:42:30,773 | INFO     | time since job start (6070s) is within the limit (349056.0s)
[2026-01-09 16:43:37] 2026-01-09 21:42:31,550 | INFO     | job 6963193610 has state=finished
[2026-01-09 16:43:37] 2026-01-09 21:42:31,550 | INFO     | preparing for final server update for job 6963193610 in state='finished'
[2026-01-09 16:43:37] 2026-01-09 21:42:31,551 | INFO     | this job has now completed (state=finished)
[2026-01-09 16:43:37] 2026-01-09 21:42:31,551 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 16:43:37] 2026-01-09 21:42:31,551 | INFO     | log transfer has been attempted: DONE
[2026-01-09 16:43:37] 2026-01-09 21:42:31,552 | INFO     | job 6963193610 has finished - writing final server update
[2026-01-09 16:43:37] 2026-01-09 21:42:31,552 | INFO     | total number of processed events: 400 (read)
[2026-01-09 16:43:37] 2026-01-09 21:42:31,553 | INFO     | executing command: lscpu
[2026-01-09 16:43:37] 2026-01-09 21:42:31,578 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 16:43:37] 2026-01-09 21:42:32,400 | WARNING  | process 13229 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 16:43:37] 2026-01-09 21:42:32,400 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963193610/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 16:43:37] 2026-01-09 21:42:32,401 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963193610/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 16:43:37] 2026-01-09 21:42:32,401 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-09 16:43:37] 2026-01-09 21:42:32,402 | WARNING  | maxPSS not found in memory monitor output
[2026-01-09 16:43:37] 2026-01-09 21:42:32,402 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4039831 B
[2026-01-09 16:43:37] 2026-01-09 21:42:32,402 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16319 B
[2026-01-09 16:43:37] 2026-01-09 21:42:32,402 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 16:43:37] 2026-01-09 21:42:32,778 | INFO     | time since job start (6072s) is within the limit (349056.0s)
[2026-01-09 16:43:37] 2026-01-09 21:42:34,783 | INFO     | time since job start (6074s) is within the limit (349056.0s)
[2026-01-09 16:43:37] 2026-01-09 21:42:36,789 | INFO     | time since job start (6076s) is within the limit (349056.0s)
[2026-01-09 16:43:37] 2026-01-09 21:42:37,276 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 16:43:37] 2026-01-09 21:42:37,283 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1795.5833333333333
[2026-01-09 16:43:37] 2026-01-09 21:42:37,285 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963193610/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 16:43:37] 2026-01-09 21:42:37,286 | INFO     | extracted standard info from prmon json
[2026-01-09 16:43:37] 2026-01-09 21:42:37,286 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 16:43:37] 2026-01-09 21:42:37,286 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 16:43:37] 2026-01-09 21:42:37,286 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 16:43:37] 2026-01-09 21:42:37,287 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 16:43:37] 2026-01-09 21:42:37,289 | INFO     | fitting pss+swap vs Time
[2026-01-09 16:43:37] 2026-01-09 21:42:37,289 | INFO     | sum of square deviations: 241429643.0
[2026-01-09 16:43:37] 2026-01-09 21:42:37,290 | INFO     | sum of deviations: -3422783139.0
[2026-01-09 16:43:37] 2026-01-09 21:42:37,290 | INFO     | mean x: 1767991989.5
[2026-01-09 16:43:37] 2026-01-09 21:42:37,290 | INFO     | mean y: 2696677.4565217393
[2026-01-09 16:43:37] 2026-01-09 21:42:37,290 | INFO     | intersect: 25067776078.446503
[2026-01-09 16:43:37] 2026-01-09 21:42:37,290 | INFO     | chi2: 0.0665183829159486
[2026-01-09 16:43:37] 2026-01-09 21:42:37,290 | INFO     | current memory leak: -14.18 B/s (using 92 data points, chi2=0.07)
[2026-01-09 16:43:37] 2026-01-09 21:42:37,291 | INFO     | could have reported an average CPU frequency of 2142 MHz (7 samples)
[2026-01-09 16:43:37] 2026-01-09 21:42:37,291 | INFO     | ..............................
[2026-01-09 16:43:37] 2026-01-09 21:42:37,291 | INFO     | . Timing measurements:
[2026-01-09 16:43:37] 2026-01-09 21:42:37,291 | INFO     | . get job = 0 s
[2026-01-09 16:43:37] 2026-01-09 21:42:37,291 | INFO     | . initial setup = 2 s
[2026-01-09 16:43:37] 2026-01-09 21:42:37,291 | INFO     | . payload setup = 7 s
[2026-01-09 16:43:37] 2026-01-09 21:42:37,292 | INFO     | . stage-in = 0 s
[2026-01-09 16:43:37] 2026-01-09 21:42:37,292 | INFO     | . payload execution = 6040 s
[2026-01-09 16:43:37] 2026-01-09 21:42:37,292 | INFO     | . stage-out = 0 s
[2026-01-09 16:43:37] 2026-01-09 21:42:37,292 | INFO     | . log creation = 0 s
[2026-01-09 16:43:37] 2026-01-09 21:42:37,292 | INFO     | ..............................
[2026-01-09 16:43:37] 2026-01-09 21:42:37,298 | INFO     | sufficient remaining disk space (29304553472 B)
[2026-01-09 16:43:37] 2026-01-09 21:42:37,309 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-09 16:43:37] 2026-01-09 21:42:37,377 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6963193610: 4348754 B (within 4404019200 B limit)
[2026-01-09 16:43:37] 2026-01-09 21:42:37,377 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6963193610/HITS.47898826._039083.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-09 16:43:37] 2026-01-09 21:42:37,377 | INFO     | total size of present files: 0 B (workdir size: 4348754 B)
[2026-01-09 16:43:37] 2026-01-09 21:42:37,377 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6963193610/HITS.47898826._039083.pool.root.1 since it does not exist
[2026-01-09 16:43:37] 2026-01-09 21:42:37,409 | INFO     | 
[2026-01-09 16:43:37] 2026-01-09 21:42:37,409 | INFO     | job summary report
[2026-01-09 16:43:37] 2026-01-09 21:42:37,409 | INFO     | --------------------------------------------------
[2026-01-09 16:43:37] 2026-01-09 21:42:37,409 | INFO     | PanDA job id: 6963193610
[2026-01-09 16:43:37] 2026-01-09 21:42:37,409 | INFO     | task id: 47898826
[2026-01-09 16:43:37] 2026-01-09 21:42:37,410 | INFO     | errors: (none)
[2026-01-09 16:43:37] 2026-01-09 21:42:37,410 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 16:43:37] 2026-01-09 21:42:37,410 | INFO     | pilot state: finished 
[2026-01-09 16:43:37] 2026-01-09 21:42:37,410 | INFO     | transexitcode: 0
[2026-01-09 16:43:37] 2026-01-09 21:42:37,410 | INFO     | exeerrorcode: 0
[2026-01-09 16:43:37] 2026-01-09 21:42:37,411 | INFO     | exeerrordiag: 
[2026-01-09 16:43:37] 2026-01-09 21:42:37,411 | INFO     | exitcode: 0
[2026-01-09 16:43:37] 2026-01-09 21:42:37,411 | INFO     | exitmsg: OK
[2026-01-09 16:43:37] 2026-01-09 21:42:37,412 | INFO     | cpuconsumptiontime: 66013 s
[2026-01-09 16:43:37] 2026-01-09 21:42:37,412 | INFO     | nevents: 400
[2026-01-09 16:43:37] 2026-01-09 21:42:37,412 | INFO     | neventsw: 0
[2026-01-09 16:43:37] 2026-01-09 21:42:37,413 | INFO     | pid: 13229
[2026-01-09 16:43:37] 2026-01-09 21:42:37,413 | INFO     | pgrp: 13229
[2026-01-09 16:43:37] 2026-01-09 21:42:37,413 | INFO     | corecount: 12
[2026-01-09 16:43:37] 2026-01-09 21:42:37,413 | INFO     | event service: False
[2026-01-09 16:43:37] 2026-01-09 21:42:37,413 | INFO     | sizes: {0: 2283800, 1: 2283999, 5: 2284261, 11: 2284317, 6050: 2311042, 6051: 2311041, 6053: 2320279, 6060: 2320417}
[2026-01-09 16:43:37] 2026-01-09 21:42:37,414 | INFO     | --------------------------------------------------
[2026-01-09 16:43:37] 2026-01-09 21:42:37,414 | INFO     | 
[2026-01-09 16:43:37] 2026-01-09 21:42:37,414 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 16:43:37] 2026-01-09 21:42:37,436 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 16:43:37] 2026-01-09 21:42:37,436 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 16:43:37] 2026-01-09 21:42:37,437 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 16:43:37] 2026-01-09 21:42:37,437 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 16:43:37] 2026-01-09 21:42:37,437 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 16:43:37] 2026-01-09 21:42:37,437 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 16:43:37] 2026-01-09 21:42:37,437 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 16:43:37] 2026-01-09 21:42:37,437 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 16:43:37] 2026-01-09 21:42:37,438 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 16:43:37] 2026-01-09 21:42:37,438 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 16:43:37] 2026-01-09 21:42:37,438 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 16:43:37] 2026-01-09 21:42:37,438 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 16:43:37] 2026-01-09 21:42:37,438 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 16:43:37] 2026-01-09 21:42:37,439 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 16:43:37] 2026-01-09 21:42:37,439 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 16:43:37] 2026-01-09 21:42:37,439 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 16:43:37] 2026-01-09 21:42:37,439 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 16:43:37] 2026-01-09 21:42:37,439 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 16:43:37] 2026-01-09 21:42:37,440 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 16:43:37] 2026-01-09 21:42:37,440 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 16:43:37] 2026-01-09 21:42:37,440 | INFO     | job 6963193610 has completed (purged errors)
[2026-01-09 16:43:37] 2026-01-09 21:42:37,440 | INFO     | overall cleanup function is called
[2026-01-09 16:43:37] 2026-01-09 21:42:37,486 | INFO     | number of running child processes to parent process 13229: 1
[2026-01-09 16:43:37] 2026-01-09 21:42:37,486 | INFO     | maximum number of monitored processes: 6
[2026-01-09 16:43:37] 2026-01-09 21:42:37,486 | INFO     | aborting job monitoring since job object (job id=6963193610) has expired
[2026-01-09 16:43:37] 2026-01-09 21:42:38,448 | INFO     | --- collectZombieJob: --- 10, [13229]
[2026-01-09 16:43:37] 2026-01-09 21:42:38,449 | INFO     | zombie collector waiting for pid 13229
[2026-01-09 16:43:37] 2026-01-09 21:42:38,449 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 16:43:37] 2026-01-09 21:42:38,449 | INFO     | collected zombie processes
[2026-01-09 16:43:37] 2026-01-09 21:42:38,449 | INFO     | will attempt to kill all subprocesses of pid=13229
[2026-01-09 16:43:37] 2026-01-09 21:42:38,540 | INFO     | process IDs to be killed: [13229] (in reverse order)
[2026-01-09 16:43:37] 2026-01-09 21:42:38,592 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 16:43:37] 2026-01-09 21:42:38,593 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 16:43:37] 2026-01-09 21:42:38,597 | INFO     | did not find any defunct processes belonging to 13229
[2026-01-09 16:43:37] 2026-01-09 21:42:38,600 | INFO     | did not find any defunct processes belonging to 13229
[2026-01-09 16:43:37] 2026-01-09 21:42:38,600 | INFO     | ready for new job
[2026-01-09 16:43:37] 2026-01-09 21:42:38,600 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 16:43:37] 2026-01-09 21:42:38,601 | INFO     | ***************************************
[2026-01-09 16:43:37] 2026-01-09 21:42:38,601 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 16:43:37] 2026-01-09 21:42:38,601 | INFO     | ***************************************
[2026-01-09 16:43:37] 2026-01-09 21:42:38,601 | INFO     | 
[2026-01-09 16:43:37] 2026-01-09 21:42:38,602 | INFO     | architecture information:
[2026-01-09 16:43:37] 2026-01-09 21:42:38,602 | INFO     | executing command: cat /etc/os-release
[2026-01-09 16:43:37] 2026-01-09 21:42:38,616 | INFO     | cat /etc/os-release:
[2026-01-09 16:43:37] NAME="CentOS Linux"
[2026-01-09 16:43:37] VERSION="7 (Core)"
[2026-01-09 16:43:37] ID="centos"
[2026-01-09 16:43:37] ID_LIKE="rhel fedora"
[2026-01-09 16:43:37] VERSION_ID="7"
[2026-01-09 16:43:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 16:43:37] ANSI_COLOR="0;31"
[2026-01-09 16:43:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 16:43:37] HOME_URL="https://www.centos.org/"
[2026-01-09 16:43:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 16:43:37] 
[2026-01-09 16:43:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 16:43:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 16:43:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 16:43:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 16:43:37] 
[2026-01-09 16:43:37] 2026-01-09 21:42:38,616 | INFO     | ***************************************
[2026-01-09 16:43:37] 2026-01-09 21:42:39,118 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 16:43:37] 2026-01-09 21:42:39,134 | INFO     | sufficient remaining disk space (29309796352 B)
[2026-01-09 16:43:37] 2026-01-09 21:42:39,135 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 16:43:37] 2026-01-09 21:42:39,135 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 16:43:37] 2026-01-09 21:42:39,135 | INFO     | update_server=False
[2026-01-09 16:43:37] 2026-01-09 21:42:39,135 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 16:43:37] 2026-01-09 21:42:39,135 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 16:43:37] 2026-01-09 21:42:39,136 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 16:43:37] 2026-01-09 21:42:39,136 | INFO     | aborting loop
[2026-01-09 16:43:37] 2026-01-09 21:42:39,601 | INFO     | all payload control threads have been joined
[2026-01-09 16:43:37] 2026-01-09 21:42:39,752 | INFO     | all data control threads have been joined
[2026-01-09 16:43:37] 2026-01-09 21:42:40,075 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 16:43:37] 2026-01-09 21:42:40,141 | INFO     | [job] retrieve thread has finished
[2026-01-09 16:43:37] 2026-01-09 21:42:40,141 | INFO     | [job] job monitor thread has finished
[2026-01-09 16:43:37] 2026-01-09 21:42:40,142 | INFO     | [job] queue monitor thread has finished
[2026-01-09 16:43:37] 2026-01-09 21:42:40,150 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 16:43:37] 2026-01-09 21:42:40,198 | INFO     | [payload] failed_post thread has finished
[2026-01-09 16:43:37] 2026-01-09 21:42:40,392 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 16:43:37] 2026-01-09 21:42:40,434 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 16:43:37] 2026-01-09 21:42:40,480 | INFO     | all job control threads have been joined
[2026-01-09 16:43:37] 2026-01-09 21:42:40,550 | INFO     | [data] copytool_in thread has finished
[2026-01-09 16:43:37] 2026-01-09 21:42:40,602 | INFO     | [payload] control thread has finished
[2026-01-09 16:43:37] 2026-01-09 21:42:40,758 | INFO     | [data] control thread has finished
[2026-01-09 16:43:37] 2026-01-09 21:42:41,329 | INFO     | [payload] validate_post thread has finished
[2026-01-09 16:43:37] 2026-01-09 21:42:41,486 | INFO     | [job] control thread has finished
[2026-01-09 16:43:37] 2026-01-09 21:42:41,499 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 16:43:37] 2026-01-09 21:42:41,501 | INFO     | [job] validate thread has finished
[2026-01-09 16:43:37] 2026-01-09 21:42:42,080 | INFO     | [data] copytool_out thread has finished
[2026-01-09 16:43:37] 2026-01-09 21:42:44,156 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 16:43:37] 2026-01-09 21:42:50,065 | INFO     | job.realtimelogging is not enabled
[2026-01-09 16:43:37] 2026-01-09 21:42:51,071 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 16:43:37] 2026-01-09 21:43:09,988 | INFO     | PID=6868 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 16:43:37] 2026-01-09 21:43:09,989 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 16:43:37] 2026-01-09 21:43:09,989 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 16:43:37] 2026-01-09 21:43:09,989 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 16:43:37] 2026-01-09 21:43:30,025 | INFO     | [monitor] cgroup control has ended
[2026-01-09 16:43:37] 2026-01-09 21:43:31,799 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139944786560832)>', '<ExcThread(monitor, started 139943959574272)>']
[2026-01-09 16:43:37] 2026-01-09 21:43:32,085 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 16:43:37] 2026-01-09 21:43:32,085 | INFO     | [monitor] control thread has ended
[2026-01-09 16:43:37] 2026-01-09 21:43:36,825 | INFO     | all workflow threads have been joined
[2026-01-09 16:43:37] 2026-01-09 21:43:36,825 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 16:43:37] 2026-01-09 21:43:36,825 | INFO     | traces error code: 0
[2026-01-09 16:43:37] 2026-01-09 21:43:36,826 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 16:43:37] 2026-01-09 21:43:36,908 [wrapper] ==== pilot stdout END ====
[2026-01-09 16:43:37] 2026-01-09 21:43:36,911 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 16:43:37] 2026-01-09 21:43:36,915 [wrapper] pilotpid: 6868
[2026-01-09 16:43:37] 2026-01-09 21:43:36,919 [wrapper] Pilot exit status: 0
[2026-01-09 16:43:37] 2026-01-09 21:43:36,934 [wrapper] pandaids: 6963193610
[2026-01-09 16:43:37] 2026-01-09 21:43:36,979 [wrapper] cleanup supervisor_pilot 12526 6869
[2026-01-09 16:43:37] 2026-01-09 21:43:36,983 [wrapper] Test setup, not cleaning
[2026-01-09 16:43:37] 2026-01-09 21:43:36,987 [wrapper] apfmon messages muted
[2026-01-09 16:43:37] 2026-01-09 21:43:36,991 [wrapper] ==== wrapper stdout END ====
[2026-01-09 16:43:37] 2026-01-09 21:43:36,994 [wrapper] ==== wrapper stderr END ====
[2026-01-09 16:43:37]  *** Error codes and diagnostics ***
[2026-01-09 16:43:37]     "exeErrorCode": 0,
[2026-01-09 16:43:37]     "exeErrorDiag": "",
[2026-01-09 16:43:37]     "pilotErrorCode": 0,
[2026-01-09 16:43:37]     "pilotErrorDiag": "",
[2026-01-09 16:43:37]  *** Listing of results directory ***
[2026-01-09 16:43:37] total 439348
[2026-01-09 16:43:37] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 16:43:37] -rwx------ 1 boincer umatlas     36322 Jan  8 23:25 runpilot2-wrapper.sh
[2026-01-09 16:43:37] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 23:30 queuedata.json
[2026-01-09 16:43:37] -rw-r--r-- 1 boincer umatlas       100 Jan  9 15:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 16:43:37] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 15:01 run_atlas
[2026-01-09 16:43:37] -rw-r--r-- 1 boincer umatlas       105 Jan  9 15:01 job.xml
[2026-01-09 16:43:37] -rw-r--r-- 2 boincer umatlas 223592325 Jan  9 15:01 EVNT.47898824._001502.pool.root.1
[2026-01-09 16:43:37] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 15:01 start_atlas.sh
[2026-01-09 16:43:37] drwxrwx--x 2 boincer umatlas      4096 Jan  9 15:01 shared
[2026-01-09 16:43:37] -rw-r--r-- 2 boincer umatlas    592399 Jan  9 15:01 input.tar.gz
[2026-01-09 16:43:37] -rw-r--r-- 1 boincer umatlas         0 Jan  9 15:01 boinc_lockfile
[2026-01-09 16:43:37] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 15:01 pandaJob.out
[2026-01-09 16:43:37] -rw------- 1 boincer umatlas        57 Jan  9 15:01 setup.sh.local
[2026-01-09 16:43:37] -rw------- 1 boincer umatlas    989364 Jan  9 15:01 agis_schedconf.cvmfs.json
[2026-01-09 16:43:37] -rw------- 1 boincer umatlas   1516240 Jan  9 15:01 agis_ddmendpoints.agis.ALL.json
[2026-01-09 16:43:37] drwx------ 5 boincer umatlas      4096 Jan  9 15:01 pilot3
[2026-01-09 16:43:37] -rw-r--r-- 1 boincer umatlas      5953 Jan  9 16:37 init_data.xml
[2026-01-09 16:43:37] -rw------- 1 boincer umatlas 219859900 Jan  9 16:41 HITS.47898826._039083.pool.root.1
[2026-01-09 16:43:37] -rw-r--r-- 1 boincer umatlas       529 Jan  9 16:42 boinc_task_state.xml
[2026-01-09 16:43:37] -rw------- 1 boincer umatlas      1047 Jan  9 16:42 memory_monitor_summary.json
[2026-01-09 16:43:37] -rw------- 1 boincer umatlas    401649 Jan  9 16:42 log.47898826._039083.job.log.tgz.1
[2026-01-09 16:43:37] -rw------- 1 boincer umatlas      7850 Jan  9 16:42 heartbeat.json
[2026-01-09 16:43:37] -rw------- 1 boincer umatlas        95 Jan  9 16:43 pilot_heartbeat.json
[2026-01-09 16:43:37] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 16:43 boinc_mmap_file
[2026-01-09 16:43:37] -rw-r--r-- 1 boincer umatlas        27 Jan  9 16:43 wrapper_checkpoint.txt
[2026-01-09 16:43:37] -rw------- 1 boincer umatlas      4817 Jan  9 16:43 pilotlog.txt
[2026-01-09 16:43:37] -rw------- 1 boincer umatlas    863812 Jan  9 16:43 log.47898826._039083.job.log.1
[2026-01-09 16:43:37] -rw------- 1 boincer umatlas       357 Jan  9 16:43 output.list
[2026-01-09 16:43:37] -rw-r--r-- 1 boincer umatlas       620 Jan  9 16:43 runtime_log
[2026-01-09 16:43:37] -rw------- 1 boincer umatlas   1280000 Jan  9 16:43 result.tar.gz
[2026-01-09 16:43:37] -rw-r--r-- 1 boincer umatlas      9344 Jan  9 16:43 runtime_log.err
[2026-01-09 16:43:37] -rw------- 1 boincer umatlas       659 Jan  9 16:43 nVILDmZFJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfNmKDm3SziPn.diag
[2026-01-09 16:43:37] -rw-r--r-- 1 boincer umatlas     22779 Jan  9 16:43 stderr.txt
[2026-01-09 16:43:37] HITS file was successfully produced:
[2026-01-09 16:43:37] -rw------- 1 boincer umatlas 219859900 Jan  9 16:41 shared/HITS.pool.root.1
[2026-01-09 16:43:37]  *** Contents of shared directory: ***
[2026-01-09 16:43:37] total 434912
[2026-01-09 16:43:37] -rw-r--r-- 2 boincer umatlas 223592325 Jan  9 15:01 ATLAS.root_0
[2026-01-09 16:43:37] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 15:01 start_atlas.sh
[2026-01-09 16:43:37] -rw-r--r-- 2 boincer umatlas    592399 Jan  9 15:01 input.tar.gz
[2026-01-09 16:43:37] -rw------- 1 boincer umatlas 219859900 Jan  9 16:41 HITS.pool.root.1
[2026-01-09 16:43:37] -rw------- 1 boincer umatlas   1280000 Jan  9 16:43 result.tar.gz
16:43:38 (3150): run_atlas exited; CPU time 65996.745783
16:43:38 (3150): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN