Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:01:41 (1620250): wrapper (7.7.26015): starting
18:01:41 (1620250): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 18:01:41] Arguments: --nthreads 8
[2026-01-09 18:01:41] Threads: 8
[2026-01-09 18:01:41] Checking for CVMFS
[2026-01-09 18:01:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 18:01:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 18:01:41] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 18:01:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 18:01:42] 2.13.3.0 9582 94021 169248 154959 0 299 22397879 40960000 31092 16776704 0 1123078765 99.720 833183649 48758 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 18:01:42] CVMFS is ok
[2026-01-09 18:01:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 18:01:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 18:01:42] Further information can be found at the LHC@home message board.
[2026-01-09 18:01:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 18:01:42] Checking for apptainer binary...
[2026-01-09 18:01:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 18:01:42] Running /usr/bin/apptainer --version
[2026-01-09 18:01:42] apptainer version 1.4.5-2.el9
[2026-01-09 18:01:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 18:01:42] c8-7-4.aglt2.org
[2026-01-09 18:01:42] apptainer works
[2026-01-09 18:01:43] Set ATHENA_PROC_NUMBER=8
[2026-01-09 18:01:43] Set ATHENA_CORE_NUMBER=8
[2026-01-09 18:01:43] Starting ATLAS job with PandaID=6963187187
[2026-01-09 18:01:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 19:36:55]  *** The last 200 lines of the pilot log: ***
[2026-01-09 19:36:55] 2026-01-10 00:36:08,956 | INFO     | summary of transferred files:
[2026-01-09 19:36:55] 2026-01-10 00:36:08,956 | INFO     |  -- lfn=log.47898826._037061.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 19:36:55] 2026-01-10 00:36:08,957 | INFO     | stage-out finished correctly
[2026-01-09 19:36:55] 2026-01-10 00:36:09,277 | INFO     | time since job start (5630s) is within the limit (349056.0s)
[2026-01-09 19:36:55] 2026-01-10 00:36:09,845 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 19:36:55] 2026-01-10 00:36:10,215 | INFO     | job 6963187187 has state=finished
[2026-01-09 19:36:55] 2026-01-10 00:36:10,216 | INFO     | preparing for final server update for job 6963187187 in state='finished'
[2026-01-09 19:36:55] 2026-01-10 00:36:10,216 | INFO     | this job has now completed (state=finished)
[2026-01-09 19:36:55] 2026-01-10 00:36:10,216 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 19:36:55] 2026-01-10 00:36:10,216 | INFO     | log transfer has been attempted: DONE
[2026-01-09 19:36:55] 2026-01-10 00:36:10,216 | INFO     | job 6963187187 has finished - writing final server update
[2026-01-09 19:36:55] 2026-01-10 00:36:10,216 | INFO     | total number of processed events: 400 (read)
[2026-01-09 19:36:55] 2026-01-10 00:36:10,227 | INFO     | executing command: lscpu
[2026-01-09 19:36:55] 2026-01-10 00:36:10,499 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 19:36:55] 2026-01-10 00:36:11,286 | INFO     | time since job start (5632s) is within the limit (349056.0s)
[2026-01-09 19:36:55] 2026-01-10 00:36:13,293 | INFO     | time since job start (5634s) is within the limit (349056.0s)
[2026-01-09 19:36:55] 2026-01-10 00:36:14,394 | WARNING  | process 1643888 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 19:36:55] 2026-01-10 00:36:14,394 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963187187/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 19:36:55] 2026-01-10 00:36:14,395 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963187187/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 19:36:55] 2026-01-10 00:36:14,395 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-09 19:36:55] 2026-01-10 00:36:14,395 | WARNING  | maxPSS not found in memory monitor output
[2026-01-09 19:36:55] 2026-01-10 00:36:14,395 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3300067 B
[2026-01-09 19:36:55] 2026-01-10 00:36:14,395 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16319 B
[2026-01-09 19:36:55] 2026-01-10 00:36:14,395 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 19:36:55] 2026-01-10 00:36:15,299 | INFO     | time since job start (5636s) is within the limit (349056.0s)
[2026-01-09 19:36:55] 2026-01-10 00:36:17,306 | INFO     | time since job start (5638s) is within the limit (349056.0s)
[2026-01-09 19:36:55] 2026-01-10 00:36:19,314 | INFO     | time since job start (5640s) is within the limit (349056.0s)
[2026-01-09 19:36:55] 2026-01-10 00:36:21,203 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 19:36:55] 2026-01-10 00:36:21,208 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.993679687499
[2026-01-09 19:36:55] 2026-01-10 00:36:21,224 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963187187/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 19:36:55] 2026-01-10 00:36:21,224 | INFO     | extracted standard info from prmon json
[2026-01-09 19:36:55] 2026-01-10 00:36:21,224 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 19:36:55] 2026-01-10 00:36:21,224 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 19:36:55] 2026-01-10 00:36:21,225 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 19:36:55] 2026-01-10 00:36:21,225 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 19:36:55] 2026-01-10 00:36:21,226 | INFO     | fitting pss+swap vs Time
[2026-01-09 19:36:55] 2026-01-10 00:36:21,226 | INFO     | sum of square deviations: 183761585.0
[2026-01-09 19:36:55] 2026-01-10 00:36:21,226 | INFO     | sum of deviations: 1555406700.4999998
[2026-01-09 19:36:55] 2026-01-10 00:36:21,226 | INFO     | mean x: 1768002655.5
[2026-01-09 19:36:55] 2026-01-10 00:36:21,226 | INFO     | mean y: 2502565.5833333335
[2026-01-09 19:36:55] 2026-01-10 00:36:21,226 | INFO     | intersect: -14962339933.280033
[2026-01-09 19:36:55] 2026-01-10 00:36:21,226 | INFO     | chi2: 0.0068817726391390355
[2026-01-09 19:36:55] 2026-01-10 00:36:21,226 | INFO     | current memory leak: 8.46 B/s (using 84 data points, chi2=0.01)
[2026-01-09 19:36:55] 2026-01-10 00:36:21,227 | INFO     | could have reported an average CPU frequency of 3799 MHz (7 samples)
[2026-01-09 19:36:55] 2026-01-10 00:36:21,227 | INFO     | ..............................
[2026-01-09 19:36:55] 2026-01-10 00:36:21,227 | INFO     | . Timing measurements:
[2026-01-09 19:36:55] 2026-01-10 00:36:21,227 | INFO     | . get job = 0 s
[2026-01-09 19:36:55] 2026-01-10 00:36:21,227 | INFO     | . initial setup = 4 s
[2026-01-09 19:36:55] 2026-01-10 00:36:21,227 | INFO     | . payload setup = 25 s
[2026-01-09 19:36:55] 2026-01-10 00:36:21,227 | INFO     | . stage-in = 0 s
[2026-01-09 19:36:55] 2026-01-10 00:36:21,227 | INFO     | . payload execution = 5564 s
[2026-01-09 19:36:55] 2026-01-10 00:36:21,227 | INFO     | . stage-out = 0 s
[2026-01-09 19:36:55] 2026-01-10 00:36:21,227 | INFO     | . log creation = 0 s
[2026-01-09 19:36:55] 2026-01-10 00:36:21,227 | INFO     | ..............................
[2026-01-09 19:36:55] 2026-01-10 00:36:21,236 | INFO     | sufficient remaining disk space (169391161344 B)
[2026-01-09 19:36:55] 2026-01-10 00:36:21,236 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-09 19:36:55] 2026-01-10 00:36:21,236 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6963187187: 3605882 B (within 4404019200 B limit)
[2026-01-09 19:36:55] 2026-01-10 00:36:21,236 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6963187187/HITS.47898826._037061.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-09 19:36:55] 2026-01-10 00:36:21,236 | INFO     | total size of present files: 0 B (workdir size: 3605882 B)
[2026-01-09 19:36:55] 2026-01-10 00:36:21,236 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6963187187/HITS.47898826._037061.pool.root.1 since it does not exist
[2026-01-09 19:36:55] 2026-01-10 00:36:21,291 | INFO     | 
[2026-01-09 19:36:55] 2026-01-10 00:36:21,291 | INFO     | job summary report
[2026-01-09 19:36:55] 2026-01-10 00:36:21,291 | INFO     | --------------------------------------------------
[2026-01-09 19:36:55] 2026-01-10 00:36:21,291 | INFO     | PanDA job id: 6963187187
[2026-01-09 19:36:55] 2026-01-10 00:36:21,291 | INFO     | task id: 47898826
[2026-01-09 19:36:55] 2026-01-10 00:36:21,291 | INFO     | errors: (none)
[2026-01-09 19:36:55] 2026-01-10 00:36:21,291 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 19:36:55] 2026-01-10 00:36:21,291 | INFO     | pilot state: finished 
[2026-01-09 19:36:55] 2026-01-10 00:36:21,291 | INFO     | transexitcode: 0
[2026-01-09 19:36:55] 2026-01-10 00:36:21,291 | INFO     | exeerrorcode: 0
[2026-01-09 19:36:55] 2026-01-10 00:36:21,291 | INFO     | exeerrordiag: 
[2026-01-09 19:36:55] 2026-01-10 00:36:21,291 | INFO     | exitcode: 0
[2026-01-09 19:36:55] 2026-01-10 00:36:21,292 | INFO     | exitmsg: OK
[2026-01-09 19:36:55] 2026-01-10 00:36:21,292 | INFO     | cpuconsumptiontime: 31483 s
[2026-01-09 19:36:55] 2026-01-10 00:36:21,292 | INFO     | nevents: 400
[2026-01-09 19:36:55] 2026-01-10 00:36:21,292 | INFO     | neventsw: 0
[2026-01-09 19:36:55] 2026-01-10 00:36:21,292 | INFO     | pid: 1643888
[2026-01-09 19:36:55] 2026-01-10 00:36:21,292 | INFO     | pgrp: 1643888
[2026-01-09 19:36:55] 2026-01-10 00:36:21,292 | INFO     | corecount: 8
[2026-01-09 19:36:55] 2026-01-10 00:36:21,292 | INFO     | event service: False
[2026-01-09 19:36:55] 2026-01-10 00:36:21,292 | INFO     | sizes: {0: 2283971, 11: 2283971, 19: 2284261, 21: 2284289, 5593: 2310981, 5594: 2319979, 5595: 2320163, 5606: 2320385}
[2026-01-09 19:36:55] 2026-01-10 00:36:21,292 | INFO     | --------------------------------------------------
[2026-01-09 19:36:55] 2026-01-10 00:36:21,292 | INFO     | 
[2026-01-09 19:36:55] 2026-01-10 00:36:21,292 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 19:36:55] 2026-01-10 00:36:21,324 | INFO     | time since job start (5642s) is within the limit (349056.0s)
[2026-01-09 19:36:55] 2026-01-10 00:36:21,447 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 19:36:55] 2026-01-10 00:36:21,447 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 19:36:55] 2026-01-10 00:36:21,447 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 19:36:55] 2026-01-10 00:36:21,447 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 19:36:55] 2026-01-10 00:36:21,447 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 19:36:55] 2026-01-10 00:36:21,447 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 19:36:55] 2026-01-10 00:36:21,447 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 19:36:55] 2026-01-10 00:36:21,447 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 19:36:55] 2026-01-10 00:36:21,447 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 19:36:55] 2026-01-10 00:36:21,447 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 19:36:55] 2026-01-10 00:36:21,447 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 19:36:55] 2026-01-10 00:36:21,447 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 19:36:55] 2026-01-10 00:36:21,447 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 19:36:55] 2026-01-10 00:36:21,447 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 19:36:55] 2026-01-10 00:36:21,447 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 19:36:55] 2026-01-10 00:36:21,447 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 19:36:55] 2026-01-10 00:36:21,447 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 19:36:55] 2026-01-10 00:36:21,447 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 19:36:55] 2026-01-10 00:36:21,447 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 19:36:55] 2026-01-10 00:36:21,447 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 19:36:55] 2026-01-10 00:36:21,447 | INFO     | job 6963187187 has completed (purged errors)
[2026-01-09 19:36:55] 2026-01-10 00:36:21,448 | INFO     | overall cleanup function is called
[2026-01-09 19:36:55] 2026-01-10 00:36:21,957 | INFO     | number of running child processes to parent process 1643888: 1
[2026-01-09 19:36:55] 2026-01-10 00:36:21,957 | INFO     | maximum number of monitored processes: 6
[2026-01-09 19:36:55] 2026-01-10 00:36:21,957 | INFO     | aborting job monitoring since job object (job id=6963187187) has expired
[2026-01-09 19:36:55] 2026-01-10 00:36:22,454 | INFO     | --- collectZombieJob: --- 10, [1643888]
[2026-01-09 19:36:55] 2026-01-10 00:36:22,455 | INFO     | zombie collector waiting for pid 1643888
[2026-01-09 19:36:55] 2026-01-10 00:36:22,455 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 19:36:55] 2026-01-10 00:36:22,455 | INFO     | collected zombie processes
[2026-01-09 19:36:55] 2026-01-10 00:36:22,455 | INFO     | will attempt to kill all subprocesses of pid=1643888
[2026-01-09 19:36:55] 2026-01-10 00:36:22,901 | INFO     | process IDs to be killed: [1643888] (in reverse order)
[2026-01-09 19:36:55] 2026-01-10 00:36:23,116 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 19:36:55] 2026-01-10 00:36:23,117 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 19:36:55] 2026-01-10 00:36:23,139 | INFO     | did not find any defunct processes belonging to 1643888
[2026-01-09 19:36:55] 2026-01-10 00:36:23,160 | INFO     | did not find any defunct processes belonging to 1643888
[2026-01-09 19:36:55] 2026-01-10 00:36:23,161 | INFO     | ready for new job
[2026-01-09 19:36:55] 2026-01-10 00:36:23,161 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 19:36:55] 2026-01-10 00:36:23,162 | INFO     | ***************************************
[2026-01-09 19:36:55] 2026-01-10 00:36:23,162 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 19:36:55] 2026-01-10 00:36:23,162 | INFO     | ***************************************
[2026-01-09 19:36:55] 2026-01-10 00:36:23,162 | INFO     | 
[2026-01-09 19:36:55] 2026-01-10 00:36:23,166 | INFO     | architecture information:
[2026-01-09 19:36:55] 2026-01-10 00:36:23,169 | INFO     | executing command: cat /etc/os-release
[2026-01-09 19:36:55] 2026-01-10 00:36:23,182 | INFO     | cat /etc/os-release:
[2026-01-09 19:36:55] NAME="CentOS Linux"
[2026-01-09 19:36:55] VERSION="7 (Core)"
[2026-01-09 19:36:55] ID="centos"
[2026-01-09 19:36:55] ID_LIKE="rhel fedora"
[2026-01-09 19:36:55] VERSION_ID="7"
[2026-01-09 19:36:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 19:36:55] ANSI_COLOR="0;31"
[2026-01-09 19:36:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 19:36:55] HOME_URL="https://www.centos.org/"
[2026-01-09 19:36:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 19:36:55] 
[2026-01-09 19:36:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 19:36:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 19:36:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 19:36:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 19:36:55] 
[2026-01-09 19:36:55] 2026-01-10 00:36:23,182 | INFO     | ***************************************
[2026-01-09 19:36:55] 2026-01-10 00:36:23,686 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 19:36:55] 2026-01-10 00:36:23,734 | INFO     | sufficient remaining disk space (169395355648 B)
[2026-01-09 19:36:55] 2026-01-10 00:36:23,735 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 19:36:55] 2026-01-10 00:36:23,735 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 19:36:55] 2026-01-10 00:36:23,735 | INFO     | update_server=False
[2026-01-09 19:36:55] 2026-01-10 00:36:23,735 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 19:36:55] 2026-01-10 00:36:23,735 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:36:55] 2026-01-10 00:36:23,735 | INFO     | aborting loop
[2026-01-09 19:36:55] 2026-01-10 00:36:24,326 | INFO     | all job control threads have been joined
[2026-01-09 19:36:55] 2026-01-10 00:36:24,562 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 19:36:55] 2026-01-10 00:36:24,740 | INFO     | [job] job monitor thread has finished
[2026-01-09 19:36:55] 2026-01-10 00:36:24,740 | INFO     | [job] retrieve thread has finished
[2026-01-09 19:36:55] 2026-01-10 00:36:24,802 | INFO     | all data control threads have been joined
[2026-01-09 19:36:55] 2026-01-10 00:36:24,899 | INFO     | all payload control threads have been joined
[2026-01-09 19:36:55] 2026-01-10 00:36:24,946 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 19:36:55] 2026-01-10 00:36:25,038 | INFO     | [job] validate thread has finished
[2026-01-09 19:36:55] 2026-01-10 00:36:25,128 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 19:36:55] 2026-01-10 00:36:25,271 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 19:36:55] 2026-01-10 00:36:25,332 | INFO     | [job] control thread has finished
[2026-01-09 19:36:55] 2026-01-10 00:36:25,446 | INFO     | [payload] validate_post thread has finished
[2026-01-09 19:36:55] 2026-01-10 00:36:25,808 | INFO     | [data] control thread has finished
[2026-01-09 19:36:55] 2026-01-10 00:36:25,883 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 19:36:55] 2026-01-10 00:36:25,908 | INFO     | [payload] control thread has finished
[2026-01-09 19:36:55] 2026-01-10 00:36:26,091 | INFO     | [payload] failed_post thread has finished
[2026-01-09 19:36:55] 2026-01-10 00:36:26,163 | INFO     | [data] copytool_in thread has finished
[2026-01-09 19:36:55] 2026-01-10 00:36:26,322 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:36:55] 2026-01-10 00:36:26,568 | INFO     | [data] copytool_out thread has finished
[2026-01-09 19:36:55] 2026-01-10 00:36:27,328 | INFO     | [job] queue monitor thread has finished
[2026-01-09 19:36:55] 2026-01-10 00:36:28,286 | INFO     | [monitor] cgroup control has ended
[2026-01-09 19:36:55] 2026-01-10 00:36:28,959 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 19:36:55] 2026-01-10 00:36:34,774 | INFO     | job.realtimelogging is not enabled
[2026-01-09 19:36:55] 2026-01-10 00:36:35,781 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 19:36:55] 2026-01-10 00:36:35,973 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140319718053696)>', '<ExcThread(monitor, started 140319349774080)>']
[2026-01-09 19:36:55] 2026-01-10 00:36:40,997 | INFO     | all workflow threads have been joined
[2026-01-09 19:36:55] 2026-01-10 00:36:40,999 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 19:36:55] 2026-01-10 00:36:40,999 | INFO     | traces error code: 0
[2026-01-09 19:36:55] 2026-01-10 00:36:40,999 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 19:36:55] 2026-01-10 00:36:54,873 | INFO     | PID=1624850 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 19:36:55] 2026-01-10 00:36:54,874 | INFO     | .. there are 27 such processes running
[2026-01-09 19:36:55] 2026-01-10 00:36:54,874 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 19:36:55] 2026-01-10 00:36:54,874 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 19:36:55] 2026-01-10 00:36:54,874 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 19:36:55] 2026-01-10 00:36:54,874 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 19:36:55] 2026-01-10 00:36:54,874 | INFO     | [monitor] control thread has ended
[2026-01-09 19:36:55] 2026-01-10 00:36:54,975 [wrapper] ==== pilot stdout END ====
[2026-01-09 19:36:55] 2026-01-10 00:36:54,977 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 19:36:55] 2026-01-10 00:36:54,979 [wrapper] pilotpid: 1624850
[2026-01-09 19:36:55] 2026-01-10 00:36:54,981 [wrapper] Pilot exit status: 0
[2026-01-09 19:36:55] 2026-01-10 00:36:55,014 [wrapper] pandaids: 6963187187
[2026-01-09 19:36:55] 2026-01-10 00:36:55,136 [wrapper] cleanup supervisor_pilot 2081001 1624851
[2026-01-09 19:36:55] 2026-01-10 00:36:55,150 [wrapper] Test setup, not cleaning
[2026-01-09 19:36:55] 2026-01-10 00:36:55,177 [wrapper] apfmon messages muted
[2026-01-09 19:36:55] 2026-01-10 00:36:55,183 [wrapper] ==== wrapper stdout END ====
[2026-01-09 19:36:55] 2026-01-10 00:36:55,214 [wrapper] ==== wrapper stderr END ====
[2026-01-09 19:36:55]  *** Error codes and diagnostics ***
[2026-01-09 19:36:55]     "exeErrorCode": 0,
[2026-01-09 19:36:55]     "exeErrorDiag": "",
[2026-01-09 19:36:55]     "pilotErrorCode": 0,
[2026-01-09 19:36:55]     "pilotErrorDiag": "",
[2026-01-09 19:36:55]  *** Listing of results directory ***
[2026-01-09 19:36:55] total 440324
[2026-01-09 19:36:55] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 19:36:55] -rwx------. 1 boincer umatlas     36322 Jan  8 23:25 runpilot2-wrapper.sh
[2026-01-09 19:36:55] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 23:28 queuedata.json
[2026-01-09 19:36:55] -rw-r--r--. 1 boincer umatlas       100 Jan  9 18:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 19:36:55] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 18:01 run_atlas
[2026-01-09 19:36:55] -rw-r--r--. 1 boincer umatlas       105 Jan  9 18:01 job.xml
[2026-01-09 19:36:55] -rw-r--r--. 2 boincer umatlas 223303219 Jan  9 18:01 EVNT.47898824._001421.pool.root.1
[2026-01-09 19:36:55] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 18:01 start_atlas.sh
[2026-01-09 19:36:55] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 18:01 shared
[2026-01-09 19:36:55] -rw-r--r--. 2 boincer umatlas    592402 Jan  9 18:01 input.tar.gz
[2026-01-09 19:36:55] -rw-r--r--. 1 boincer umatlas         0 Jan  9 18:01 boinc_lockfile
[2026-01-09 19:36:55] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 18:01 pandaJob.out
[2026-01-09 19:36:55] -rw-------. 1 boincer umatlas        57 Jan  9 18:01 setup.sh.local
[2026-01-09 19:36:55] -rw-------. 1 boincer umatlas    989375 Jan  9 18:02 agis_schedconf.cvmfs.json
[2026-01-09 19:36:55] -rw-------. 1 boincer umatlas   1516240 Jan  9 18:02 agis_ddmendpoints.agis.ALL.json
[2026-01-09 19:36:55] drwx------. 5 boincer umatlas      4096 Jan  9 18:02 pilot3
[2026-01-09 19:36:55] -rw-r--r--. 1 boincer umatlas      7171 Jan  9 19:28 init_data.xml
[2026-01-09 19:36:55] -rw-------. 1 boincer umatlas 221435160 Jan  9 19:35 HITS.47898826._037061.pool.root.1
[2026-01-09 19:36:55] -rw-r--r--. 1 boincer umatlas       529 Jan  9 19:35 boinc_task_state.xml
[2026-01-09 19:36:55] -rw-------. 1 boincer umatlas        95 Jan  9 19:35 pilot_heartbeat.json
[2026-01-09 19:36:55] -rw-------. 1 boincer umatlas      1040 Jan  9 19:36 memory_monitor_summary.json
[2026-01-09 19:36:55] -rw-------. 1 boincer umatlas    338067 Jan  9 19:36 log.47898826._037061.job.log.tgz.1
[2026-01-09 19:36:55] -rw-------. 1 boincer umatlas      7791 Jan  9 19:36 heartbeat.json
[2026-01-09 19:36:55] -rw-r--r--. 1 boincer umatlas        27 Jan  9 19:36 wrapper_checkpoint.txt
[2026-01-09 19:36:55] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 19:36 boinc_mmap_file
[2026-01-09 19:36:55] -rw-------. 1 boincer umatlas       823 Jan  9 19:36 pilotlog.txt
[2026-01-09 19:36:55] -rw-------. 1 boincer umatlas    781056 Jan  9 19:36 log.47898826._037061.job.log.1
[2026-01-09 19:36:55] -rw-------. 1 boincer umatlas       357 Jan  9 19:36 output.list
[2026-01-09 19:36:55] -rw-r--r--. 1 boincer umatlas       620 Jan  9 19:36 runtime_log
[2026-01-09 19:36:55] -rw-------. 1 boincer umatlas   1136640 Jan  9 19:36 result.tar.gz
[2026-01-09 19:36:55] -rw-r--r--. 1 boincer umatlas      9332 Jan  9 19:36 runtime_log.err
[2026-01-09 19:36:55] -rw-------. 1 boincer umatlas       653 Jan  9 19:36 p9rKDmjEJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm94gKDmwQw05n.diag
[2026-01-09 19:36:55] -rw-r--r--. 1 boincer umatlas     22435 Jan  9 19:36 stderr.txt
[2026-01-09 19:36:55] HITS file was successfully produced:
[2026-01-09 19:36:55] -rw-------. 1 boincer umatlas 221435160 Jan  9 19:35 shared/HITS.pool.root.1
[2026-01-09 19:36:55]  *** Contents of shared directory: ***
[2026-01-09 19:36:55] total 436036
[2026-01-09 19:36:55] -rw-r--r--. 2 boincer umatlas 223303219 Jan  9 18:01 ATLAS.root_0
[2026-01-09 19:36:55] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 18:01 start_atlas.sh
[2026-01-09 19:36:55] -rw-r--r--. 2 boincer umatlas    592402 Jan  9 18:01 input.tar.gz
[2026-01-09 19:36:55] -rw-------. 1 boincer umatlas 221435160 Jan  9 19:35 HITS.pool.root.1
[2026-01-09 19:36:55] -rw-------. 1 boincer umatlas   1136640 Jan  9 19:36 result.tar.gz
19:36:57 (1620250): run_atlas exited; CPU time 31621.146931
19:36:57 (1620250): called boinc_finish(0)

</stderr_txt>
]]>

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