Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
21:44:22 (2046822): wrapper (7.7.26015): starting
21:44:22 (2046822): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 21:44:22] Arguments: --nthreads 4
[2026-01-09 21:44:22] Threads: 4
[2026-01-09 21:44:22] Checking for CVMFS
[2026-01-09 21:44:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 21:44:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 21:44:22] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 21:44:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 21:44:22] 2.13.1.0 355772 2163 101928 154956 3 188 9856192 10240001 1822 130560 0 4025117 99.996 82796 341 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2026-01-09 21:44:22] CVMFS is ok
[2026-01-09 21:44:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 21:44:22] Checking for apptainer binary...
[2026-01-09 21:44:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 21:44:22] Running /usr/bin/apptainer --version
[2026-01-09 21:44:22] apptainer version 1.4.5
[2026-01-09 21:44:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 21:44:23] ellievl
[2026-01-09 21:44:23] apptainer works
[2026-01-09 21:44:23] Set ATHENA_PROC_NUMBER=4
[2026-01-09 21:44:23] Set ATHENA_CORE_NUMBER=4
[2026-01-09 21:44:23] Starting ATLAS job with PandaID=6963187154
[2026-01-09 21:44:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 23:40:54]  *** The last 200 lines of the pilot log: ***
[2026-01-09 23:40:54] 2026-01-09 22:39:54,883 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 23:40:54] 2026-01-09 22:39:55,604 | INFO     | time since job start (6916s) is within the limit (349056.0s)
[2026-01-09 23:40:54] 2026-01-09 22:39:57,387 | INFO     | monitor loop #516: job 0:6963187154 is in state 'finished'
[2026-01-09 23:40:54] 2026-01-09 22:39:57,387 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 23:40:54] 2026-01-09 22:39:57,608 | INFO     | time since job start (6918s) is within the limit (349056.0s)
[2026-01-09 23:40:54] 2026-01-09 22:39:57,620 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 23:40:54] 2026-01-09 22:39:57,621 | INFO     | found 24 cores (12 cores per socket, 2 sockets) , CPU MHz: 3700.040999999999
[2026-01-09 23:40:54] 2026-01-09 22:39:57,623 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/4/PanDA_Pilot-6963187154/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 23:40:54] 2026-01-09 22:39:57,623 | INFO     | extracted standard info from prmon json
[2026-01-09 23:40:54] 2026-01-09 22:39:57,623 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 23:40:54] 2026-01-09 22:39:57,623 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 23:40:54] 2026-01-09 22:39:57,624 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 23:40:54] 2026-01-09 22:39:57,624 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 23:40:54] 2026-01-09 22:39:57,625 | INFO     | fitting pss+swap vs Time
[2026-01-09 23:40:54] 2026-01-09 22:39:57,625 | INFO     | sum of square deviations: 447383272.0
[2026-01-09 23:40:54] 2026-01-09 22:39:57,626 | INFO     | sum of deviations: 12093420800.0
[2026-01-09 23:40:54] 2026-01-09 22:39:57,626 | INFO     | mean x: 1767994931.0
[2026-01-09 23:40:54] 2026-01-09 22:39:57,626 | INFO     | mean y: 2315972.8761061947
[2026-01-09 23:40:54] 2026-01-09 22:39:57,626 | INFO     | intersect: -47789159504.66469
[2026-01-09 23:40:54] 2026-01-09 22:39:57,626 | INFO     | chi2: 1.8289630067694556
[2026-01-09 23:40:54] 2026-01-09 22:39:57,626 | INFO     | sum of square deviations: 390582207.0
[2026-01-09 23:40:54] 2026-01-09 22:39:57,626 | INFO     | sum of deviations: 11812427807.500002
[2026-01-09 23:40:54] 2026-01-09 22:39:57,626 | INFO     | mean x: 1767994778.5
[2026-01-09 23:40:54] 2026-01-09 22:39:57,626 | INFO     | mean y: 2315217.175925926
[2026-01-09 23:40:54] 2026-01-09 22:39:57,626 | INFO     | intersect: -53467377745.74035
[2026-01-09 23:40:54] 2026-01-09 22:39:57,627 | INFO     | chi2: 1.8330750521516288
[2026-01-09 23:40:54] 2026-01-09 22:39:57,627 | INFO     | current chi2=1.8330750521516288 (change=-0.22482933591076057 %)
[2026-01-09 23:40:54] 2026-01-09 22:39:57,627 | INFO     | right removable region: 107
[2026-01-09 23:40:54] 2026-01-09 22:39:57,627 | INFO     | sum of square deviations: 390582207.0
[2026-01-09 23:40:54] 2026-01-09 22:39:57,627 | INFO     | sum of deviations: -6946129353.0
[2026-01-09 23:40:54] 2026-01-09 22:39:57,627 | INFO     | mean x: 1767995083.5
[2026-01-09 23:40:54] 2026-01-09 22:39:57,627 | INFO     | mean y: 2366238.314814815
[2026-01-09 23:40:54] 2026-01-09 22:39:57,627 | INFO     | intersect: 31444460438.624958
[2026-01-09 23:40:54] 2026-01-09 22:39:57,627 | INFO     | chi2: 0.019222313804843946
[2026-01-09 23:40:54] 2026-01-09 22:39:57,627 | INFO     | current chi2=0.019222313804843946 (change=98.94900477846204 %)
[2026-01-09 23:40:54] 2026-01-09 22:39:57,628 | INFO     | sum of square deviations: 338804492.0
[2026-01-09 23:40:54] 2026-01-09 22:39:57,628 | INFO     | sum of deviations: -6030485864.000002
[2026-01-09 23:40:54] 2026-01-09 22:39:57,628 | INFO     | mean x: 1767995236.0
[2026-01-09 23:40:54] 2026-01-09 22:39:57,628 | INFO     | mean y: 2363524.1844660193
[2026-01-09 23:40:54] 2026-01-09 22:39:57,628 | INFO     | intersect: 31471457146.229324
[2026-01-09 23:40:54] 2026-01-09 22:39:57,628 | INFO     | chi2: 0.019050703439331296
[2026-01-09 23:40:54] 2026-01-09 22:39:57,628 | INFO     | current chi2=0.019050703439331296 (change=0.8927664341293055 %)
[2026-01-09 23:40:54] 2026-01-09 22:39:57,628 | INFO     | left removable region: 20
[2026-01-09 23:40:54] 2026-01-09 22:39:57,628 | INFO     | sum of square deviations: 204163828.0
[2026-01-09 23:40:54] 2026-01-09 22:39:57,628 | INFO     | sum of deviations: -2873281841.000001
[2026-01-09 23:40:54] 2026-01-09 22:39:57,628 | INFO     | mean x: 1767995358.0
[2026-01-09 23:40:54] 2026-01-09 22:39:57,629 | INFO     | mean y: 2355365.2873563217
[2026-01-09 23:40:54] 2026-01-09 22:39:57,629 | INFO     | intersect: 24884083959.80458
[2026-01-09 23:40:54] 2026-01-09 22:39:57,629 | INFO     | chi2: 0.014837791054434916
[2026-01-09 23:40:54] 2026-01-09 22:39:57,629 | INFO     | current memory leak: -14.07 B/s (using 87 data points, chi2=0.01)
[2026-01-09 23:40:54] 2026-01-09 22:39:57,629 | INFO     | could have reported an average CPU frequency of 3700 MHz (7 samples)
[2026-01-09 23:40:54] 2026-01-09 22:39:57,629 | INFO     | ..............................
[2026-01-09 23:40:54] 2026-01-09 22:39:57,629 | INFO     | . Timing measurements:
[2026-01-09 23:40:54] 2026-01-09 22:39:57,629 | INFO     | . get job = 0 s
[2026-01-09 23:40:54] 2026-01-09 22:39:57,629 | INFO     | . initial setup = 1 s
[2026-01-09 23:40:54] 2026-01-09 22:39:57,629 | INFO     | . payload setup = 9 s
[2026-01-09 23:40:54] 2026-01-09 22:39:57,629 | INFO     | . stage-in = 0 s
[2026-01-09 23:40:54] 2026-01-09 22:39:57,630 | INFO     | . payload execution = 6871 s
[2026-01-09 23:40:54] 2026-01-09 22:39:57,630 | INFO     | . stage-out = 0 s
[2026-01-09 23:40:54] 2026-01-09 22:39:57,630 | INFO     | . log creation = 0 s
[2026-01-09 23:40:54] 2026-01-09 22:39:57,630 | INFO     | ..............................
[2026-01-09 23:40:54] 2026-01-09 22:39:57,987 | INFO     | 
[2026-01-09 23:40:54] 2026-01-09 22:39:57,987 | INFO     | job summary report
[2026-01-09 23:40:54] 2026-01-09 22:39:57,987 | INFO     | --------------------------------------------------
[2026-01-09 23:40:54] 2026-01-09 22:39:57,987 | INFO     | PanDA job id: 6963187154
[2026-01-09 23:40:54] 2026-01-09 22:39:57,987 | INFO     | task id: 47898826
[2026-01-09 23:40:54] 2026-01-09 22:39:57,987 | INFO     | errors: (none)
[2026-01-09 23:40:54] 2026-01-09 22:39:57,987 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 23:40:54] 2026-01-09 22:39:57,987 | INFO     | pilot state: finished 
[2026-01-09 23:40:54] 2026-01-09 22:39:57,987 | INFO     | transexitcode: 0
[2026-01-09 23:40:54] 2026-01-09 22:39:57,987 | INFO     | exeerrorcode: 0
[2026-01-09 23:40:54] 2026-01-09 22:39:57,987 | INFO     | exeerrordiag: 
[2026-01-09 23:40:54] 2026-01-09 22:39:57,987 | INFO     | exitcode: 0
[2026-01-09 23:40:54] 2026-01-09 22:39:57,987 | INFO     | exitmsg: OK
[2026-01-09 23:40:54] 2026-01-09 22:39:57,987 | INFO     | cpuconsumptiontime: 26472 s
[2026-01-09 23:40:54] 2026-01-09 22:39:57,988 | INFO     | nevents: 400
[2026-01-09 23:40:54] 2026-01-09 22:39:57,988 | INFO     | neventsw: 0
[2026-01-09 23:40:54] 2026-01-09 22:39:57,988 | INFO     | pid: 2057324
[2026-01-09 23:40:54] 2026-01-09 22:39:57,988 | INFO     | pgrp: 2057324
[2026-01-09 23:40:54] 2026-01-09 22:39:57,988 | INFO     | corecount: 4
[2026-01-09 23:40:54] 2026-01-09 22:39:57,988 | INFO     | event service: False
[2026-01-09 23:40:54] 2026-01-09 22:39:57,988 | INFO     | sizes: {0: 2283758, 1: 2284013, 8: 2284275, 11: 2284303, 6885: 2311429, 6886: 2311428, 6887: 2320638, 6891: 2320722, 6901: 2320916}
[2026-01-09 23:40:54] 2026-01-09 22:39:57,988 | INFO     | --------------------------------------------------
[2026-01-09 23:40:54] 2026-01-09 22:39:57,988 | INFO     | 
[2026-01-09 23:40:54] 2026-01-09 22:39:57,988 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/4
[2026-01-09 23:40:54] 2026-01-09 22:39:58,017 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 23:40:54] 2026-01-09 22:39:58,018 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 23:40:54] 2026-01-09 22:39:58,018 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 23:40:54] 2026-01-09 22:39:58,018 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 23:40:54] 2026-01-09 22:39:58,018 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 23:40:54] 2026-01-09 22:39:58,018 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 23:40:54] 2026-01-09 22:39:58,018 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 23:40:54] 2026-01-09 22:39:58,018 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 23:40:54] 2026-01-09 22:39:58,018 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 23:40:54] 2026-01-09 22:39:58,018 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 23:40:54] 2026-01-09 22:39:58,018 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 23:40:54] 2026-01-09 22:39:58,018 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 23:40:54] 2026-01-09 22:39:58,019 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 23:40:54] 2026-01-09 22:39:58,019 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 23:40:54] 2026-01-09 22:39:58,019 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 23:40:54] 2026-01-09 22:39:58,019 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 23:40:54] 2026-01-09 22:39:58,019 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 23:40:54] 2026-01-09 22:39:58,019 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 23:40:54] 2026-01-09 22:39:58,019 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 23:40:54] 2026-01-09 22:39:58,019 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 23:40:54] 2026-01-09 22:39:58,019 | INFO     | job 6963187154 has completed (purged errors)
[2026-01-09 23:40:54] 2026-01-09 22:39:58,020 | INFO     | overall cleanup function is called
[2026-01-09 23:40:54] 2026-01-09 22:39:59,028 | INFO     | --- collectZombieJob: --- 10, [2057324]
[2026-01-09 23:40:54] 2026-01-09 22:39:59,028 | INFO     | zombie collector waiting for pid 2057324
[2026-01-09 23:40:54] 2026-01-09 22:39:59,028 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 23:40:54] 2026-01-09 22:39:59,028 | INFO     | collected zombie processes
[2026-01-09 23:40:54] 2026-01-09 22:39:59,028 | INFO     | will attempt to kill all subprocesses of pid=2057324
[2026-01-09 23:40:54] 2026-01-09 22:39:59,240 | INFO     | process IDs to be killed: [2057324] (in reverse order)
[2026-01-09 23:40:54] 2026-01-09 22:39:59,327 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 23:40:54] 2026-01-09 22:39:59,327 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 23:40:54] 2026-01-09 22:39:59,333 | INFO     | did not find any defunct processes belonging to 2057324
[2026-01-09 23:40:54] 2026-01-09 22:39:59,337 | INFO     | did not find any defunct processes belonging to 2057324
[2026-01-09 23:40:54] 2026-01-09 22:39:59,338 | INFO     | ready for new job
[2026-01-09 23:40:54] 2026-01-09 22:39:59,338 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 23:40:54] 2026-01-09 22:39:59,340 | INFO     | ***************************************
[2026-01-09 23:40:54] 2026-01-09 22:39:59,340 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 23:40:54] 2026-01-09 22:39:59,340 | INFO     | ***************************************
[2026-01-09 23:40:54] 2026-01-09 22:39:59,340 | INFO     | 
[2026-01-09 23:40:54] 2026-01-09 22:39:59,341 | INFO     | pilot is running in a VM
[2026-01-09 23:40:54] 2026-01-09 22:39:59,341 | INFO     | architecture information:
[2026-01-09 23:40:54] 2026-01-09 22:39:59,342 | INFO     | executing command: cat /etc/os-release
[2026-01-09 23:40:54] 2026-01-09 22:39:59,359 | INFO     | cat /etc/os-release:
[2026-01-09 23:40:54] NAME="CentOS Linux"
[2026-01-09 23:40:54] VERSION="7 (Core)"
[2026-01-09 23:40:54] ID="centos"
[2026-01-09 23:40:54] ID_LIKE="rhel fedora"
[2026-01-09 23:40:54] VERSION_ID="7"
[2026-01-09 23:40:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 23:40:54] ANSI_COLOR="0;31"
[2026-01-09 23:40:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 23:40:54] HOME_URL="https://www.centos.org/"
[2026-01-09 23:40:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 23:40:54] 
[2026-01-09 23:40:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 23:40:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 23:40:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 23:40:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 23:40:54] 
[2026-01-09 23:40:54] 2026-01-09 22:39:59,360 | INFO     | ***************************************
[2026-01-09 23:40:54] 2026-01-09 22:39:59,863 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/4
[2026-01-09 23:40:54] 2026-01-09 22:39:59,890 | INFO     | sufficient remaining disk space (52570357760 B)
[2026-01-09 23:40:54] 2026-01-09 22:39:59,891 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 23:40:54] 2026-01-09 22:39:59,891 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 23:40:54] 2026-01-09 22:39:59,891 | INFO     | update_server=False
[2026-01-09 23:40:54] 2026-01-09 22:39:59,891 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 23:40:54] 2026-01-09 22:39:59,891 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 23:40:54] 2026-01-09 22:39:59,892 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 23:40:54] 2026-01-09 22:39:59,892 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 23:40:54] 2026-01-09 22:39:59,892 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:40:54] 2026-01-09 22:39:59,892 | INFO     | will abort loop
[2026-01-09 23:40:54] 2026-01-09 22:39:59,968 | INFO     | all payload control threads have been joined
[2026-01-09 23:40:54] 2026-01-09 22:40:00,058 | INFO     | all data control threads have been joined
[2026-01-09 23:40:54] 2026-01-09 22:40:00,893 | INFO     | [job] job monitor thread has finished
[2026-01-09 23:40:54] 2026-01-09 22:40:00,897 | INFO     | [job] retrieve thread has finished
[2026-01-09 23:40:54] 2026-01-09 22:40:00,931 | INFO     | all job control threads have been joined
[2026-01-09 23:40:54] 2026-01-09 22:40:00,974 | INFO     | [payload] control thread has finished
[2026-01-09 23:40:54] 2026-01-09 22:40:01,063 | INFO     | [data] control thread has finished
[2026-01-09 23:40:54] 2026-01-09 22:40:01,182 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 23:40:54] 2026-01-09 22:40:01,367 | INFO     | [payload] validate_post thread has finished
[2026-01-09 23:40:54] 2026-01-09 22:40:01,689 | INFO     | [data] copytool_in thread has finished
[2026-01-09 23:40:54] 2026-01-09 22:40:01,897 | INFO     | [data] copytool_out thread has finished
[2026-01-09 23:40:54] 2026-01-09 22:40:01,937 | INFO     | [job] control thread has finished
[2026-01-09 23:40:54] 2026-01-09 22:40:02,015 | INFO     | [job] validate thread has finished
[2026-01-09 23:40:54] 2026-01-09 22:40:02,143 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 23:40:54] 2026-01-09 22:40:02,228 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 23:40:54] 2026-01-09 22:40:02,379 | INFO     | [payload] failed_post thread has finished
[2026-01-09 23:40:54] 2026-01-09 22:40:02,595 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 23:40:54] 2026-01-09 22:40:02,686 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:40:54] 2026-01-09 22:40:03,688 | INFO     | [job] queue monitor thread has finished
[2026-01-09 23:40:54] 2026-01-09 22:40:06,602 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 23:40:54] 2026-01-09 22:40:10,165 | INFO     | job.realtimelogging is not enabled
[2026-01-09 23:40:54] 2026-01-09 22:40:11,171 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 23:40:54] 2026-01-09 22:40:30,958 | INFO     | PID=2050680 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 23:40:54] 2026-01-09 22:40:30,958 | INFO     | .. there are 3 such processes running
[2026-01-09 23:40:54] 2026-01-09 22:40:30,958 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 23:40:54] 2026-01-09 22:40:30,958 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 23:40:54] 2026-01-09 22:40:30,958 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 23:40:54] 2026-01-09 22:40:48,215 | INFO     | [monitor] cgroup control has ended
[2026-01-09 23:40:54] 2026-01-09 22:40:49,396 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129255150499648)>', '<ExcThread(monitor, started 129254054409984)>']
[2026-01-09 23:40:54] 2026-01-09 22:40:50,059 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 23:40:54] 2026-01-09 22:40:50,059 | INFO     | [monitor] control thread has ended
[2026-01-09 23:40:54] 2026-01-09 22:40:54,422 | INFO     | all workflow threads have been joined
[2026-01-09 23:40:54] 2026-01-09 22:40:54,422 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 23:40:54] 2026-01-09 22:40:54,422 | INFO     | traces error code: 0
[2026-01-09 23:40:54] 2026-01-09 22:40:54,422 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 23:40:54] 2026-01-09 22:40:54,522 [wrapper] ==== pilot stdout END ====
[2026-01-09 23:40:54] 2026-01-09 22:40:54,529 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 23:40:54] 2026-01-09 22:40:54,536 [wrapper] pilotpid: 2050680
[2026-01-09 23:40:54] 2026-01-09 22:40:54,543 [wrapper] Pilot exit status: 0
[2026-01-09 23:40:54] 2026-01-09 22:40:54,566 [wrapper] pandaids: 6963187154
[2026-01-09 23:40:54] 2026-01-09 22:40:54,641 [wrapper] cleanup supervisor_pilot 2121329 2050681
[2026-01-09 23:40:54] 2026-01-09 22:40:54,648 [wrapper] Test setup, not cleaning
[2026-01-09 23:40:54] 2026-01-09 22:40:54,654 [wrapper] apfmon messages muted
[2026-01-09 23:40:54] 2026-01-09 22:40:54,660 [wrapper] ==== wrapper stdout END ====
[2026-01-09 23:40:54] 2026-01-09 22:40:54,666 [wrapper] ==== wrapper stderr END ====
[2026-01-09 23:40:54]  *** Error codes and diagnostics ***
[2026-01-09 23:40:54]     "exeErrorCode": 0,
[2026-01-09 23:40:54]     "exeErrorDiag": "",
[2026-01-09 23:40:54]     "pilotErrorCode": 0,
[2026-01-09 23:40:54]     "pilotErrorDiag": "",
[2026-01-09 23:40:54]  *** Listing of results directory ***
[2026-01-09 23:40:54] insgesamt 435716
[2026-01-09 23:40:54] -rw-r--r-- 1 yeti boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-09 23:40:54] -rwx------ 1 yeti boinc     36322 Jan  9 05:25 runpilot2-wrapper.sh
[2026-01-09 23:40:54] -rw-r--r-- 1 yeti boinc      5112 Jan  9 05:28 queuedata.json
[2026-01-09 23:40:54] -rw-r--r-- 1 yeti boinc       100 Jan  9 21:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 23:40:54] -rwxr-xr-x 1 yeti boinc      7986 Jan  9 21:44 run_atlas
[2026-01-09 23:40:54] -rw-r--r-- 1 yeti boinc       105 Jan  9 21:44 job.xml
[2026-01-09 23:40:54] -rw-r--r-- 2 yeti boinc 222232026 Jan  9 21:44 EVNT.47898824._001420.pool.root.1
[2026-01-09 23:40:54] -rw-r--r-- 2 yeti boinc     15847 Jan  9 21:44 start_atlas.sh
[2026-01-09 23:40:54] drwxrwx--x 2 yeti boinc      4096 Jan  9 21:44 shared
[2026-01-09 23:40:54] -rw-r--r-- 2 yeti boinc    592404 Jan  9 21:44 input.tar.gz
[2026-01-09 23:40:54] -rw-r--r-- 1 yeti boinc         0 Jan  9 21:44 boinc_setup_complete
[2026-01-09 23:40:54] -rw-r--r-- 1 yeti boinc      6556 Jan  9 21:44 init_data.xml
[2026-01-09 23:40:54] -rw-r--r-- 1 yeti boinc         0 Jan  9 21:44 boinc_lockfile
[2026-01-09 23:40:54] -rw-r--r-- 1 yeti boinc      2520 Jan  9 21:44 pandaJob.out
[2026-01-09 23:40:54] -rw------- 1 yeti boinc        52 Jan  9 21:44 setup.sh.local
[2026-01-09 23:40:54] -rw------- 1 yeti boinc    989381 Jan  9 21:44 agis_schedconf.cvmfs.json
[2026-01-09 23:40:54] -rw------- 1 yeti boinc   1516240 Jan  9 21:44 agis_ddmendpoints.agis.ALL.json
[2026-01-09 23:40:54] drwx------ 5 yeti boinc      4096 Jan  9 21:44 pilot3
[2026-01-09 23:40:54] -rw------- 1 yeti boinc 217440406 Jan  9 23:39 HITS.47898826._037028.pool.root.1
[2026-01-09 23:40:54] -rw-r--r-- 1 yeti boinc       530 Jan  9 23:39 boinc_task_state.xml
[2026-01-09 23:40:54] -rw------- 1 yeti boinc        95 Jan  9 23:39 pilot_heartbeat.json
[2026-01-09 23:40:54] -rw------- 1 yeti boinc      1021 Jan  9 23:39 memory_monitor_summary.json
[2026-01-09 23:40:54] -rw------- 1 yeti boinc    286563 Jan  9 23:39 log.47898826._037028.job.log.tgz.1
[2026-01-09 23:40:54] -rw------- 1 yeti boinc      7731 Jan  9 23:39 heartbeat.json
[2026-01-09 23:40:54] -rw-r--r-- 1 yeti boinc      8192 Jan  9 23:40 boinc_mmap_file
[2026-01-09 23:40:54] -rw-r--r-- 1 yeti boinc        27 Jan  9 23:40 wrapper_checkpoint.txt
[2026-01-09 23:40:54] -rw------- 1 yeti boinc      5157 Jan  9 23:40 pilotlog.txt
[2026-01-09 23:40:54] -rw------- 1 yeti boinc   1009995 Jan  9 23:40 log.47898826._037028.job.log.1
[2026-01-09 23:40:54] -rw------- 1 yeti boinc       357 Jan  9 23:40 output.list
[2026-01-09 23:40:54] -rw-r--r-- 1 yeti boinc       620 Jan  9 23:40 runtime_log
[2026-01-09 23:40:54] -rw------- 1 yeti boinc   1310720 Jan  9 23:40 result.tar.gz
[2026-01-09 23:40:54] -rw-r--r-- 1 yeti boinc      9537 Jan  9 23:40 runtime_log.err
[2026-01-09 23:40:54] -rw------- 1 yeti boinc       637 Jan  9 23:40 MdIODmiEJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmd4gKDmmwxI5m.diag
[2026-01-09 23:40:54] -rw-r--r-- 1 yeti boinc     20999 Jan  9 23:40 stderr.txt
[2026-01-09 23:40:54] HITS file was successfully produced:
[2026-01-09 23:40:54] -rw------- 1 yeti boinc 217440406 Jan  9 23:39 shared/HITS.pool.root.1
[2026-01-09 23:40:54]  *** Contents of shared directory: ***
[2026-01-09 23:40:54] insgesamt 431252
[2026-01-09 23:40:54] -rw-r--r-- 2 yeti boinc 222232026 Jan  9 21:44 ATLAS.root_0
[2026-01-09 23:40:54] -rw-r--r-- 2 yeti boinc     15847 Jan  9 21:44 start_atlas.sh
[2026-01-09 23:40:54] -rw-r--r-- 2 yeti boinc    592404 Jan  9 21:44 input.tar.gz
[2026-01-09 23:40:54] -rw------- 1 yeti boinc 217440406 Jan  9 23:39 HITS.pool.root.1
[2026-01-09 23:40:54] -rw------- 1 yeti boinc   1310720 Jan  9 23:40 result.tar.gz
23:40:56 (2046822): run_atlas exited; CPU time 26736.695531
23:40:56 (2046822): called boinc_finish(0)

</stderr_txt>
]]>

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