Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:26:23 (882919): wrapper (7.7.26015): starting
14:26:23 (882919): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 14:26:23] Arguments: --nthreads 12
[2026-01-10 14:26:23] Threads: 12
[2026-01-10 14:26:23] Checking for CVMFS
[2026-01-10 14:26:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 14:26:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 14:26:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 14:26:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 14:26:23] 2.13.3.0 4294 4082 98008 154981 0 82 38808510 46080000 1043 130560 0 8550041 99.996 152831 951 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2026-01-10 14:26:23] CVMFS is ok
[2026-01-10 14:26:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 14:26:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 14:26:23] Further information can be found at the LHC@home message board.
[2026-01-10 14:26:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 14:26:23] Checking for apptainer binary...
[2026-01-10 14:26:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 14:26:23] Running /usr/bin/apptainer --version
[2026-01-10 14:26:23] apptainer version 1.4.5-2.el9
[2026-01-10 14:26:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 14:26:23] gpu01.farm.particle.cz
[2026-01-10 14:26:23] apptainer works
[2026-01-10 14:26:23] Set ATHENA_PROC_NUMBER=12
[2026-01-10 14:26:23] Set ATHENA_CORE_NUMBER=12
[2026-01-10 14:26:23] Starting ATLAS job with PandaID=6963187197
[2026-01-10 14:26:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 15:21:42]  *** The last 200 lines of the pilot log: ***
[2026-01-10 15:21:42]  mtime=0
[2026-01-10 15:21:42]  protocol_id=None
[2026-01-10 15:21:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 15:21:42]  replicas=None
[2026-01-10 15:21:42]  scope=mc23_13p6TeV
[2026-01-10 15:21:42]  status=None
[2026-01-10 15:21:42]  status_code=0
[2026-01-10 15:21:42]  storage_token=
[2026-01-10 15:21:42]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6963187197/log.47898826._037071.job.log.tgz.1
[2026-01-10 15:21:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/34/log.47898826._037071.job.log.tgz.1
[2026-01-10 15:21:42]  workdir=None
[2026-01-10 15:21:42] ]
[2026-01-10 15:21:42] 2026-01-10 14:20:46,345 | INFO     | transferring file log.47898826._037071.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6963187197/log.47898826._037071.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-01-10 15:21:42] 2026-01-10 14:20:46,345 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6963187197/log.47898826._037071.job.log.tgz.1 /var/lib/boinc/slots/0/log.47898826._037071.job
[2026-01-10 15:21:42] 2026-01-10 14:20:46,358 | INFO     | adding to output.list: log.47898826._037071.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/34/log.47898826._037071.job.log.tg
[2026-01-10 15:21:42] 2026-01-10 14:20:46,359 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 15:21:42] 2026-01-10 14:20:46,359 | INFO     | summary of transferred files:
[2026-01-10 15:21:42] 2026-01-10 14:20:46,359 | INFO     |  -- lfn=log.47898826._037071.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 15:21:42] 2026-01-10 14:20:46,359 | INFO     | stage-out finished correctly
[2026-01-10 15:21:42] 2026-01-10 14:20:46,709 | INFO     | monitor loop #249: job 0:6963187197 is in state 'finished'
[2026-01-10 15:21:42] 2026-01-10 14:20:46,710 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 15:21:42] 2026-01-10 14:20:47,682 | INFO     | time since job start (3256s) is within the limit (349056.0s)
[2026-01-10 15:21:42] 2026-01-10 14:20:49,212 | INFO     | monitor loop #250: job 0:6963187197 is in state 'finished'
[2026-01-10 15:21:42] 2026-01-10 14:20:49,213 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 15:21:42] 2026-01-10 14:20:49,312 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 15:21:42] 2026-01-10 14:20:49,688 | INFO     | time since job start (3258s) is within the limit (349056.0s)
[2026-01-10 15:21:42] 2026-01-10 14:20:50,230 | INFO     | job 6963187197 has state=finished
[2026-01-10 15:21:42] 2026-01-10 14:20:50,230 | INFO     | preparing for final server update for job 6963187197 in state='finished'
[2026-01-10 15:21:42] 2026-01-10 14:20:50,231 | INFO     | this job has now completed (state=finished)
[2026-01-10 15:21:42] 2026-01-10 14:20:50,231 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 15:21:42] 2026-01-10 14:20:50,231 | INFO     | log transfer has been attempted: DONE
[2026-01-10 15:21:42] 2026-01-10 14:20:50,231 | INFO     | job 6963187197 has finished - writing final server update
[2026-01-10 15:21:42] 2026-01-10 14:20:50,231 | INFO     | total number of processed events: 400 (read)
[2026-01-10 15:21:42] 2026-01-10 14:20:50,233 | INFO     | executing command: lscpu
[2026-01-10 15:21:42] 2026-01-10 14:20:50,260 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 15:21:42] 2026-01-10 14:20:51,693 | INFO     | time since job start (3260s) is within the limit (349056.0s)
[2026-01-10 15:21:42] 2026-01-10 14:20:51,715 | INFO     | monitor loop #251: job 0:6963187197 is in state 'finished'
[2026-01-10 15:21:42] 2026-01-10 14:20:51,715 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 15:21:42] 2026-01-10 14:20:52,862 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 15:21:42] 2026-01-10 14:20:52,866 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3239.5149687499998
[2026-01-10 15:21:42] 2026-01-10 14:20:52,871 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6963187197/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 15:21:42] 2026-01-10 14:20:52,871 | INFO     | extracted standard info from prmon json
[2026-01-10 15:21:42] 2026-01-10 14:20:52,871 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 15:21:42] 2026-01-10 14:20:52,872 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 15:21:42] 2026-01-10 14:20:52,872 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 15:21:42] 2026-01-10 14:20:52,872 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 15:21:42] 2026-01-10 14:20:52,873 | INFO     | fitting pss+swap vs Time
[2026-01-10 15:21:42] 2026-01-10 14:20:52,873 | INFO     | sum of square deviations: 30168007.5
[2026-01-10 15:21:42] 2026-01-10 14:20:52,873 | INFO     | sum of deviations: -4498225644.0
[2026-01-10 15:21:42] 2026-01-10 14:20:52,873 | INFO     | mean x: 1768053289.5
[2026-01-10 15:21:42] 2026-01-10 14:20:52,873 | INFO     | mean y: 3026200.217391304
[2026-01-10 15:21:42] 2026-01-10 14:20:52,874 | INFO     | intersect: 263630070405.48868
[2026-01-10 15:21:42] 2026-01-10 14:20:52,874 | INFO     | chi2: 0.027204495060666238
[2026-01-10 15:21:42] 2026-01-10 14:20:52,874 | INFO     | current memory leak: -149.11 B/s (using 46 data points, chi2=0.03)
[2026-01-10 15:21:42] 2026-01-10 14:20:52,874 | INFO     | could have reported an average CPU frequency of 3242 MHz (5 samples)
[2026-01-10 15:21:42] 2026-01-10 14:20:52,874 | INFO     | ..............................
[2026-01-10 15:21:42] 2026-01-10 14:20:52,874 | INFO     | . Timing measurements:
[2026-01-10 15:21:42] 2026-01-10 14:20:52,874 | INFO     | . get job = 0 s
[2026-01-10 15:21:42] 2026-01-10 14:20:52,874 | INFO     | . initial setup = 2 s
[2026-01-10 15:21:42] 2026-01-10 14:20:52,874 | INFO     | . payload setup = 3 s
[2026-01-10 15:21:42] 2026-01-10 14:20:52,874 | INFO     | . stage-in = 0 s
[2026-01-10 15:21:42] 2026-01-10 14:20:52,874 | INFO     | . payload execution = 3232 s
[2026-01-10 15:21:42] 2026-01-10 14:20:52,875 | INFO     | . stage-out = 0 s
[2026-01-10 15:21:42] 2026-01-10 14:20:52,875 | INFO     | . log creation = 0 s
[2026-01-10 15:21:42] 2026-01-10 14:20:52,875 | INFO     | ..............................
[2026-01-10 15:21:42] 2026-01-10 14:20:53,393 | INFO     | 
[2026-01-10 15:21:42] 2026-01-10 14:20:53,394 | INFO     | job summary report
[2026-01-10 15:21:42] 2026-01-10 14:20:53,394 | INFO     | --------------------------------------------------
[2026-01-10 15:21:42] 2026-01-10 14:20:53,394 | INFO     | PanDA job id: 6963187197
[2026-01-10 15:21:42] 2026-01-10 14:20:53,394 | INFO     | task id: 47898826
[2026-01-10 15:21:42] 2026-01-10 14:20:53,394 | INFO     | errors: (none)
[2026-01-10 15:21:42] 2026-01-10 14:20:53,394 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 15:21:42] 2026-01-10 14:20:53,394 | INFO     | pilot state: finished 
[2026-01-10 15:21:42] 2026-01-10 14:20:53,394 | INFO     | transexitcode: 0
[2026-01-10 15:21:42] 2026-01-10 14:20:53,394 | INFO     | exeerrorcode: 0
[2026-01-10 15:21:42] 2026-01-10 14:20:53,394 | INFO     | exeerrordiag: 
[2026-01-10 15:21:42] 2026-01-10 14:20:53,394 | INFO     | exitcode: 0
[2026-01-10 15:21:42] 2026-01-10 14:20:53,395 | INFO     | exitmsg: OK
[2026-01-10 15:21:42] 2026-01-10 14:20:53,395 | INFO     | cpuconsumptiontime: 35458 s
[2026-01-10 15:21:42] 2026-01-10 14:20:53,395 | INFO     | nevents: 400
[2026-01-10 15:21:42] 2026-01-10 14:20:53,395 | INFO     | neventsw: 0
[2026-01-10 15:21:42] 2026-01-10 14:20:53,395 | INFO     | pid: 894537
[2026-01-10 15:21:42] 2026-01-10 14:20:53,395 | INFO     | pgrp: 894537
[2026-01-10 15:21:42] 2026-01-10 14:20:53,395 | INFO     | corecount: 12
[2026-01-10 15:21:42] 2026-01-10 14:20:53,395 | INFO     | event service: False
[2026-01-10 15:21:42] 2026-01-10 14:20:53,395 | INFO     | sizes: {0: 2283857, 1: 2283971, 3: 2284261, 11: 2284289, 3240: 2309837, 3241: 2318835, 3244: 2319019, 3248: 2319245}
[2026-01-10 15:21:42] 2026-01-10 14:20:53,395 | INFO     | --------------------------------------------------
[2026-01-10 15:21:42] 2026-01-10 14:20:53,395 | INFO     | 
[2026-01-10 15:21:42] 2026-01-10 14:20:53,395 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2026-01-10 15:21:42] 2026-01-10 14:20:53,410 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 15:21:42] 2026-01-10 14:20:53,411 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 15:21:42] 2026-01-10 14:20:53,411 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 15:21:42] 2026-01-10 14:20:53,411 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 15:21:42] 2026-01-10 14:20:53,411 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 15:21:42] 2026-01-10 14:20:53,411 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 15:21:42] 2026-01-10 14:20:53,411 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 15:21:42] 2026-01-10 14:20:53,411 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 15:21:42] 2026-01-10 14:20:53,411 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 15:21:42] 2026-01-10 14:20:53,411 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 15:21:42] 2026-01-10 14:20:53,411 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 15:21:42] 2026-01-10 14:20:53,411 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 15:21:42] 2026-01-10 14:20:53,411 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 15:21:42] 2026-01-10 14:20:53,411 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 15:21:42] 2026-01-10 14:20:53,412 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 15:21:42] 2026-01-10 14:20:53,412 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 15:21:42] 2026-01-10 14:20:53,412 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 15:21:42] 2026-01-10 14:20:53,412 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 15:21:42] 2026-01-10 14:20:53,412 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 15:21:42] 2026-01-10 14:20:53,412 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 15:21:42] 2026-01-10 14:20:53,412 | INFO     | job 6963187197 has completed (purged errors)
[2026-01-10 15:21:42] 2026-01-10 14:20:53,412 | INFO     | overall cleanup function is called
[2026-01-10 15:21:42] 2026-01-10 14:20:54,421 | INFO     | --- collectZombieJob: --- 10, [894537]
[2026-01-10 15:21:42] 2026-01-10 14:20:54,421 | INFO     | zombie collector waiting for pid 894537
[2026-01-10 15:21:42] 2026-01-10 14:20:54,421 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 15:21:42] 2026-01-10 14:20:54,421 | INFO     | collected zombie processes
[2026-01-10 15:21:42] 2026-01-10 14:20:54,421 | INFO     | will attempt to kill all subprocesses of pid=894537
[2026-01-10 15:21:42] 2026-01-10 14:20:54,510 | INFO     | process IDs to be killed: [894537] (in reverse order)
[2026-01-10 15:21:42] 2026-01-10 14:20:54,548 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 15:21:42] 2026-01-10 14:20:54,548 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 15:21:42] 2026-01-10 14:20:54,551 | INFO     | did not find any defunct processes belonging to 894537
[2026-01-10 15:21:42] 2026-01-10 14:20:54,554 | INFO     | did not find any defunct processes belonging to 894537
[2026-01-10 15:21:42] 2026-01-10 14:20:54,554 | INFO     | ready for new job
[2026-01-10 15:21:42] 2026-01-10 14:20:54,554 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 15:21:42] 2026-01-10 14:20:54,555 | INFO     | ***************************************
[2026-01-10 15:21:42] 2026-01-10 14:20:54,555 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 15:21:42] 2026-01-10 14:20:54,555 | INFO     | ***************************************
[2026-01-10 15:21:42] 2026-01-10 14:20:54,555 | INFO     | 
[2026-01-10 15:21:42] 2026-01-10 14:20:54,556 | INFO     | architecture information:
[2026-01-10 15:21:42] 2026-01-10 14:20:54,556 | INFO     | executing command: cat /etc/os-release
[2026-01-10 15:21:42] 2026-01-10 14:20:54,567 | INFO     | cat /etc/os-release:
[2026-01-10 15:21:42] NAME="CentOS Linux"
[2026-01-10 15:21:42] VERSION="7 (Core)"
[2026-01-10 15:21:42] ID="centos"
[2026-01-10 15:21:42] ID_LIKE="rhel fedora"
[2026-01-10 15:21:42] VERSION_ID="7"
[2026-01-10 15:21:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 15:21:42] ANSI_COLOR="0;31"
[2026-01-10 15:21:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 15:21:42] HOME_URL="https://www.centos.org/"
[2026-01-10 15:21:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 15:21:42] 
[2026-01-10 15:21:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 15:21:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 15:21:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 15:21:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 15:21:42] 
[2026-01-10 15:21:42] 2026-01-10 14:20:54,567 | INFO     | ***************************************
[2026-01-10 15:21:42] 2026-01-10 14:20:55,070 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2026-01-10 15:21:42] 2026-01-10 14:20:55,083 | INFO     | sufficient remaining disk space (34405875712 B)
[2026-01-10 15:21:42] 2026-01-10 14:20:55,083 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 15:21:42] 2026-01-10 14:20:55,084 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 15:21:42] 2026-01-10 14:20:55,084 | INFO     | update_server=False
[2026-01-10 15:21:42] 2026-01-10 14:20:55,084 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 15:21:42] 2026-01-10 14:20:55,084 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 15:21:42] 2026-01-10 14:20:55,221 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 15:21:42] 2026-01-10 14:20:55,221 | INFO     | aborting loop
[2026-01-10 15:21:42] 2026-01-10 14:20:55,283 | INFO     | all payload control threads have been joined
[2026-01-10 15:21:42] 2026-01-10 14:20:55,366 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 15:21:42] 2026-01-10 14:20:55,522 | INFO     | all data control threads have been joined
[2026-01-10 15:21:42] 2026-01-10 14:20:55,988 | INFO     | all job control threads have been joined
[2026-01-10 15:21:42] 2026-01-10 14:20:56,089 | INFO     | [job] retrieve thread has finished
[2026-01-10 15:21:42] 2026-01-10 14:20:56,150 | INFO     | [data] copytool_in thread has finished
[2026-01-10 15:21:42] 2026-01-10 14:20:56,151 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 15:21:42] 2026-01-10 14:20:56,226 | INFO     | [job] job monitor thread has finished
[2026-01-10 15:21:42] 2026-01-10 14:20:56,254 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 15:21:42] 2026-01-10 14:20:56,275 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 15:21:42] 2026-01-10 14:20:56,288 | INFO     | [payload] control thread has finished
[2026-01-10 15:21:42] 2026-01-10 14:20:56,527 | INFO     | [data] control thread has finished
[2026-01-10 15:21:42] 2026-01-10 14:20:56,720 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 15:21:42] 2026-01-10 14:20:56,993 | INFO     | [job] control thread has finished
[2026-01-10 15:21:42] 2026-01-10 14:20:57,037 | INFO     | [payload] validate_post thread has finished
[2026-01-10 15:21:42] 2026-01-10 14:20:57,089 | INFO     | [data] copytool_out thread has finished
[2026-01-10 15:21:42] 2026-01-10 14:20:57,428 | INFO     | [payload] failed_post thread has finished
[2026-01-10 15:21:42] 2026-01-10 14:20:57,525 | INFO     | [job] validate thread has finished
[2026-01-10 15:21:42] 2026-01-10 14:20:57,960 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 15:21:42] 2026-01-10 14:20:58,966 | INFO     | [job] queue monitor thread has finished
[2026-01-10 15:21:42] 2026-01-10 14:20:59,371 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 15:21:42] 2026-01-10 14:21:24,909 | INFO     | PID=886785 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 15:21:42] 2026-01-10 14:21:24,909 | INFO     | .. there are 2 such processes running
[2026-01-10 15:21:42] 2026-01-10 14:21:24,910 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 15:21:42] 2026-01-10 14:21:24,910 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 15:21:42] 2026-01-10 14:21:24,910 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 15:21:42] 2026-01-10 14:21:35,938 | INFO     | [monitor] cgroup control has ended
[2026-01-10 15:21:42] 2026-01-10 14:21:37,671 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139814798579520)>', '<ExcThread(monitor, started 139814254925568)>']
[2026-01-10 15:21:42] 2026-01-10 14:21:37,974 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 15:21:42] 2026-01-10 14:21:37,974 | INFO     | [monitor] control thread has ended
[2026-01-10 15:21:42] 2026-01-10 14:21:42,696 | INFO     | all workflow threads have been joined
[2026-01-10 15:21:42] 2026-01-10 14:21:42,696 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 15:21:42] 2026-01-10 14:21:42,697 | INFO     | traces error code: 0
[2026-01-10 15:21:42] 2026-01-10 14:21:42,697 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 15:21:42] 2026-01-10 14:21:42,761 [wrapper] ==== pilot stdout END ====
[2026-01-10 15:21:42] 2026-01-10 14:21:42,763 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 15:21:42] 2026-01-10 14:21:42,766 [wrapper] pilotpid: 886785
[2026-01-10 15:21:42] 2026-01-10 14:21:42,768 [wrapper] Pilot exit status: 0
[2026-01-10 15:21:42] 2026-01-10 14:21:42,775 [wrapper] pandaids: 6963187197
[2026-01-10 15:21:42] 2026-01-10 14:21:42,802 [wrapper] cleanup supervisor_pilot  947790 886786
[2026-01-10 15:21:42] 2026-01-10 14:21:42,804 [wrapper] Test setup, not cleaning
[2026-01-10 15:21:42] 2026-01-10 14:21:42,806 [wrapper] apfmon messages muted
[2026-01-10 15:21:42] 2026-01-10 14:21:42,807 [wrapper] ==== wrapper stdout END ====
[2026-01-10 15:21:42] 2026-01-10 14:21:42,809 [wrapper] ==== wrapper stderr END ====
[2026-01-10 15:21:42]  *** Error codes and diagnostics ***
[2026-01-10 15:21:42]     "exeErrorCode": 0,
[2026-01-10 15:21:42]     "exeErrorDiag": "",
[2026-01-10 15:21:42]     "pilotErrorCode": 0,
[2026-01-10 15:21:42]     "pilotErrorDiag": "",
[2026-01-10 15:21:42]  *** Listing of results directory ***
[2026-01-10 15:21:42] total 436468
[2026-01-10 15:21:42] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 15:21:42] -rwx------ 1 boinc boinc     36322 Jan  9 05:25 runpilot2-wrapper.sh
[2026-01-10 15:21:42] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:28 queuedata.json
[2026-01-10 15:21:42] -rw-r--r-- 1 boinc boinc       100 Jan 10 14:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 15:21:42] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 14:26 run_atlas
[2026-01-10 15:21:42] -rw-r--r-- 1 boinc boinc       105 Jan 10 14:26 job.xml
[2026-01-10 15:21:42] -rw-r--r-- 1 boinc boinc      9456 Jan 10 14:26 init_data.xml
[2026-01-10 15:21:42] -rw-r--r-- 2 boinc boinc 223303219 Jan 10 14:26 EVNT.47898824._001421.pool.root.1
[2026-01-10 15:21:42] -rw-r--r-- 2 boinc boinc     15847 Jan 10 14:26 start_atlas.sh
[2026-01-10 15:21:42] drwxrwx--x 2 boinc boinc      4096 Jan 10 14:26 shared
[2026-01-10 15:21:42] -rw-r--r-- 2 boinc boinc    592405 Jan 10 14:26 input.tar.gz
[2026-01-10 15:21:42] -rw-r--r-- 1 boinc boinc         0 Jan 10 14:26 boinc_lockfile
[2026-01-10 15:21:42] -rw-r--r-- 1 boinc boinc      2520 Jan 10 14:26 pandaJob.out
[2026-01-10 15:21:42] -rw------- 1 boinc boinc    989556 Jan 10 14:26 agis_schedconf.cvmfs.json
[2026-01-10 15:21:42] -rw------- 1 boinc boinc   1516240 Jan 10 14:26 agis_ddmendpoints.agis.ALL.json
[2026-01-10 15:21:42] drwx------ 5 boinc boinc      4096 Jan 10 14:26 pilot3
[2026-01-10 15:21:42] -rw------- 1 boinc boinc 217957538 Jan 10 15:20 HITS.47898826._037071.pool.root.1
[2026-01-10 15:21:42] -rw-r--r-- 1 boinc boinc       529 Jan 10 15:20 boinc_task_state.xml
[2026-01-10 15:21:42] -rw------- 1 boinc boinc      1027 Jan 10 15:20 memory_monitor_summary.json
[2026-01-10 15:21:42] -rw------- 1 boinc boinc    380638 Jan 10 15:20 log.47898826._037071.job.log.tgz.1
[2026-01-10 15:21:42] -rw------- 1 boinc boinc      7783 Jan 10 15:20 heartbeat.json
[2026-01-10 15:21:42] -rw------- 1 boinc boinc        95 Jan 10 15:21 pilot_heartbeat.json
[2026-01-10 15:21:42] -rw-r--r-- 1 boinc boinc      8192 Jan 10 15:21 boinc_mmap_file
[2026-01-10 15:21:42] -rw-r--r-- 1 boinc boinc        27 Jan 10 15:21 wrapper_checkpoint.txt
[2026-01-10 15:21:42] -rw------- 1 boinc boinc      4822 Jan 10 15:21 pilotlog.txt
[2026-01-10 15:21:42] -rw------- 1 boinc boinc    501089 Jan 10 15:21 log.47898826._037071.job.log.1
[2026-01-10 15:21:42] -rw------- 1 boinc boinc       357 Jan 10 15:21 output.list
[2026-01-10 15:21:42] -rw-r--r-- 1 boinc boinc       620 Jan 10 15:21 runtime_log
[2026-01-10 15:21:42] -rw------- 1 boinc boinc    901120 Jan 10 15:21 result.tar.gz
[2026-01-10 15:21:42] -rw-r--r-- 1 boinc boinc      8854 Jan 10 15:21 runtime_log.err
[2026-01-10 15:21:42] -rw------- 1 boinc boinc       660 Jan 10 15:21 505KDmjEJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJ5gKDmfP8W0n.diag
[2026-01-10 15:21:42] -rw-r--r-- 1 boinc boinc     21772 Jan 10 15:21 stderr.txt
[2026-01-10 15:21:42] HITS file was successfully produced:
[2026-01-10 15:21:42] -rw------- 1 boinc boinc 217957538 Jan 10 15:20 shared/HITS.pool.root.1
[2026-01-10 15:21:42]  *** Contents of shared directory: ***
[2026-01-10 15:21:42] total 432408
[2026-01-10 15:21:42] -rw-r--r-- 2 boinc boinc 223303219 Jan 10 14:26 ATLAS.root_0
[2026-01-10 15:21:42] -rw-r--r-- 2 boinc boinc     15847 Jan 10 14:26 start_atlas.sh
[2026-01-10 15:21:42] -rw-r--r-- 2 boinc boinc    592405 Jan 10 14:26 input.tar.gz
[2026-01-10 15:21:42] -rw------- 1 boinc boinc 217957538 Jan 10 15:20 HITS.pool.root.1
[2026-01-10 15:21:42] -rw------- 1 boinc boinc    901120 Jan 10 15:21 result.tar.gz
15:21:44 (882919): run_atlas exited; CPU time 35482.125242
15:21:44 (882919): called boinc_finish(0)

</stderr_txt>
]]>

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