Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:45:28 (21735): wrapper (7.7.26015): starting
14:45:28 (21735): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 14:45:28] Arguments: --nthreads 8
[2026-01-09 14:45:28] Threads: 8
[2026-01-09 14:45:28] Checking for CVMFS
[2026-01-09 14:45:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 14:45:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 14:45:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 14:45:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 14:45:28] 2.11.2.0 2866 137096 113508 154955 0 59 19764034 20275201 1 130560 0 37467397 99.813 9596033 24923 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 14:45:28] CVMFS is ok
[2026-01-09 14:45:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 14:45:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 14:45:28] Further information can be found at the LHC@home message board.
[2026-01-09 14:45:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 14:45:28] Checking for apptainer binary...
[2026-01-09 14:45:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 14:45:28] Running /usr/bin/apptainer --version
[2026-01-09 14:45:28] apptainer version 1.3.2-1.el7
[2026-01-09 14:45:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 14:45:30] c-204-35.aglt2.org
[2026-01-09 14:45:30] apptainer works
[2026-01-09 14:45:30] Set ATHENA_PROC_NUMBER=8
[2026-01-09 14:45:30] Set ATHENA_CORE_NUMBER=8
[2026-01-09 14:45:30] Starting ATLAS job with PandaID=6963187359
[2026-01-09 14:45:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 17:48:11]  *** The last 200 lines of the pilot log: ***
[2026-01-09 17:48:11] 2026-01-09 22:46:57,626 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 17:48:11] 2026-01-09 22:46:59,484 | INFO     | time since job start (10872s) is within the limit (349056.0s)
[2026-01-09 17:48:11] 2026-01-09 22:47:00,143 | INFO     | monitor loop #800: job 0:6963187359 is in state 'finished'
[2026-01-09 17:48:11] 2026-01-09 22:47:00,144 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 17:48:11] 2026-01-09 22:47:00,603 | INFO     | PID=25421 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 17:48:11] 2026-01-09 22:47:01,604 | INFO     | time since job start (10874s) is within the limit (349056.0s)
[2026-01-09 17:48:11] 2026-01-09 22:47:02,646 | INFO     | monitor loop #801: job 0:6963187359 is in state 'finished'
[2026-01-09 17:48:11] 2026-01-09 22:47:02,647 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 17:48:11] 2026-01-09 22:47:03,609 | INFO     | time since job start (10876s) is within the limit (349056.0s)
[2026-01-09 17:48:11] 2026-01-09 22:47:03,878 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 17:48:11] 2026-01-09 22:47:03,882 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2026-01-09 17:48:11] 2026-01-09 22:47:03,883 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963187359/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 17:48:11] 2026-01-09 22:47:03,884 | INFO     | extracted standard info from prmon json
[2026-01-09 17:48:11] 2026-01-09 22:47:03,884 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 17:48:11] 2026-01-09 22:47:03,885 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 17:48:11] 2026-01-09 22:47:03,885 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 17:48:11] 2026-01-09 22:47:03,885 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 17:48:11] 2026-01-09 22:47:03,890 | INFO     | fitting pss+swap vs Time
[2026-01-09 17:48:11] 2026-01-09 22:47:03,890 | INFO     | sum of square deviations: 1748737904.5
[2026-01-09 17:48:11] 2026-01-09 22:47:03,891 | INFO     | sum of deviations: 1418067152.500002
[2026-01-09 17:48:11] 2026-01-09 22:47:03,891 | INFO     | mean x: 1767993377.5
[2026-01-09 17:48:11] 2026-01-09 22:47:03,892 | INFO     | mean y: 2522556.4325842694
[2026-01-09 17:48:11] 2026-01-09 22:47:03,892 | INFO     | intersect: -1431159030.7387803
[2026-01-09 17:48:11] 2026-01-09 22:47:03,892 | INFO     | chi2: 1.6139914892795604
[2026-01-09 17:48:11] 2026-01-09 22:47:03,892 | INFO     | sum of square deviations: 1605470102.0
[2026-01-09 17:48:11] 2026-01-09 22:47:03,893 | INFO     | sum of deviations: 1467093310.000004
[2026-01-09 17:48:11] 2026-01-09 22:47:03,894 | INFO     | mean x: 1767993225.0
[2026-01-09 17:48:11] 2026-01-09 22:47:03,894 | INFO     | mean y: 2522610.797687861
[2026-01-09 17:48:11] 2026-01-09 22:47:03,894 | INFO     | intersect: -1613085820.2105355
[2026-01-09 17:48:11] 2026-01-09 22:47:03,894 | INFO     | chi2: 1.61435870804486
[2026-01-09 17:48:11] 2026-01-09 22:47:03,894 | INFO     | current chi2=1.61435870804486 (change=-0.022752211999802763 %)
[2026-01-09 17:48:11] 2026-01-09 22:47:03,894 | INFO     | right removable region: 172
[2026-01-09 17:48:11] 2026-01-09 22:47:03,895 | INFO     | sum of square deviations: 1605470102.0
[2026-01-09 17:48:11] 2026-01-09 22:47:03,896 | INFO     | sum of deviations: -25287308623.000004
[2026-01-09 17:48:11] 2026-01-09 22:47:03,896 | INFO     | mean x: 1767993530.0
[2026-01-09 17:48:11] 2026-01-09 22:47:03,896 | INFO     | mean y: 2550607.1329479767
[2026-01-09 17:48:11] 2026-01-09 22:47:03,897 | INFO     | intersect: 27849720094.053246
[2026-01-09 17:48:11] 2026-01-09 22:47:03,897 | INFO     | chi2: 0.15616982093498896
[2026-01-09 17:48:11] 2026-01-09 22:47:03,897 | INFO     | current chi2=0.15616982093498896 (change=90.32399972538278 %)
[2026-01-09 17:48:11] 2026-01-09 22:47:03,897 | INFO     | sum of square deviations: 1470248962.0
[2026-01-09 17:48:11] 2026-01-09 22:47:03,899 | INFO     | sum of deviations: -24035226465.999996
[2026-01-09 17:48:11] 2026-01-09 22:47:03,899 | INFO     | mean x: 1767993682.5
[2026-01-09 17:48:11] 2026-01-09 22:47:03,899 | INFO     | mean y: 2549130.464285714
[2026-01-09 17:48:11] 2026-01-09 22:47:03,899 | INFO     | intersect: 28905224560.031975
[2026-01-09 17:48:11] 2026-01-09 22:47:03,899 | INFO     | chi2: 0.13940832681705118
[2026-01-09 17:48:11] 2026-01-09 22:47:03,899 | INFO     | current chi2=0.13940832681705118 (change=10.73286376176056 %)
[2026-01-09 17:48:11] 2026-01-09 22:47:03,900 | INFO     | left removable region: 20
[2026-01-09 17:48:11] 2026-01-09 22:47:03,900 | INFO     | sum of square deviations: 1088905998.0
[2026-01-09 17:48:11] 2026-01-09 22:47:03,901 | INFO     | sum of deviations: -12634654890.0
[2026-01-09 17:48:11] 2026-01-09 22:47:03,901 | INFO     | mean x: 1767993804.5
[2026-01-09 17:48:11] 2026-01-09 22:47:03,901 | INFO     | mean y: 2536180.0789473685
[2026-01-09 17:48:11] 2026-01-09 22:47:03,901 | INFO     | intersect: 20516695904.19099
[2026-01-09 17:48:11] 2026-01-09 22:47:03,901 | INFO     | chi2: 0.10504868294809776
[2026-01-09 17:48:11] 2026-01-09 22:47:03,901 | INFO     | current memory leak: -11.60 B/s (using 152 data points, chi2=0.11)
[2026-01-09 17:48:11] 2026-01-09 22:47:03,902 | INFO     | could have reported an average CPU frequency of 2021 MHz (9 samples)
[2026-01-09 17:48:11] 2026-01-09 22:47:03,902 | INFO     | ..............................
[2026-01-09 17:48:11] 2026-01-09 22:47:03,902 | INFO     | . Timing measurements:
[2026-01-09 17:48:11] 2026-01-09 22:47:03,902 | INFO     | . get job = 0 s
[2026-01-09 17:48:11] 2026-01-09 22:47:03,902 | INFO     | . initial setup = 2 s
[2026-01-09 17:48:11] 2026-01-09 22:47:03,902 | INFO     | . payload setup = 8 s
[2026-01-09 17:48:11] 2026-01-09 22:47:03,903 | INFO     | . stage-in = 0 s
[2026-01-09 17:48:11] 2026-01-09 22:47:03,903 | INFO     | . payload execution = 10835 s
[2026-01-09 17:48:11] 2026-01-09 22:47:03,903 | INFO     | . stage-out = 2 s
[2026-01-09 17:48:11] 2026-01-09 22:47:03,903 | INFO     | . log creation = 0 s
[2026-01-09 17:48:11] 2026-01-09 22:47:03,903 | INFO     | ..............................
[2026-01-09 17:48:11] 2026-01-09 22:47:03,991 | INFO     | 
[2026-01-09 17:48:11] 2026-01-09 22:47:03,991 | INFO     | job summary report
[2026-01-09 17:48:11] 2026-01-09 22:47:03,992 | INFO     | --------------------------------------------------
[2026-01-09 17:48:11] 2026-01-09 22:47:03,992 | INFO     | PanDA job id: 6963187359
[2026-01-09 17:48:11] 2026-01-09 22:47:03,992 | INFO     | task id: 47898826
[2026-01-09 17:48:11] 2026-01-09 22:47:03,992 | INFO     | errors: (none)
[2026-01-09 17:48:11] 2026-01-09 22:47:03,992 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 17:48:11] 2026-01-09 22:47:03,992 | INFO     | pilot state: finished 
[2026-01-09 17:48:11] 2026-01-09 22:47:03,993 | INFO     | transexitcode: 0
[2026-01-09 17:48:11] 2026-01-09 22:47:03,993 | INFO     | exeerrorcode: 0
[2026-01-09 17:48:11] 2026-01-09 22:47:03,993 | INFO     | exeerrordiag: 
[2026-01-09 17:48:11] 2026-01-09 22:47:03,993 | INFO     | exitcode: 0
[2026-01-09 17:48:11] 2026-01-09 22:47:03,993 | INFO     | exitmsg: OK
[2026-01-09 17:48:11] 2026-01-09 22:47:03,993 | INFO     | cpuconsumptiontime: 81700 s
[2026-01-09 17:48:11] 2026-01-09 22:47:03,994 | INFO     | nevents: 400
[2026-01-09 17:48:11] 2026-01-09 22:47:03,994 | INFO     | neventsw: 0
[2026-01-09 17:48:11] 2026-01-09 22:47:03,994 | INFO     | pid: 31903
[2026-01-09 17:48:11] 2026-01-09 22:47:03,994 | INFO     | pgrp: 31903
[2026-01-09 17:48:11] 2026-01-09 22:47:03,994 | INFO     | corecount: 8
[2026-01-09 17:48:11] 2026-01-09 22:47:03,995 | INFO     | event service: False
[2026-01-09 17:48:11] 2026-01-09 22:47:03,995 | INFO     | sizes: {0: 2283800, 1: 2283999, 7: 2284261, 11: 2284289, 10847: 2313290, 10850: 2322288, 10851: 2322472, 10859: 2322730}
[2026-01-09 17:48:11] 2026-01-09 22:47:03,995 | INFO     | --------------------------------------------------
[2026-01-09 17:48:11] 2026-01-09 22:47:03,995 | INFO     | 
[2026-01-09 17:48:11] 2026-01-09 22:47:03,996 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 17:48:11] 2026-01-09 22:47:04,024 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 17:48:11] 2026-01-09 22:47:04,025 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 17:48:11] 2026-01-09 22:47:04,025 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 17:48:11] 2026-01-09 22:47:04,025 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 17:48:11] 2026-01-09 22:47:04,025 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 17:48:11] 2026-01-09 22:47:04,026 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 17:48:11] 2026-01-09 22:47:04,026 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 17:48:11] 2026-01-09 22:47:04,026 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 17:48:11] 2026-01-09 22:47:04,026 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 17:48:11] 2026-01-09 22:47:04,027 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 17:48:11] 2026-01-09 22:47:04,027 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 17:48:11] 2026-01-09 22:47:04,027 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 17:48:11] 2026-01-09 22:47:04,027 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 17:48:11] 2026-01-09 22:47:04,027 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 17:48:11] 2026-01-09 22:47:04,028 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 17:48:11] 2026-01-09 22:47:04,028 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 17:48:11] 2026-01-09 22:47:04,028 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 17:48:11] 2026-01-09 22:47:04,028 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 17:48:11] 2026-01-09 22:47:04,029 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 17:48:11] 2026-01-09 22:47:04,029 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 17:48:11] 2026-01-09 22:47:04,029 | INFO     | job 6963187359 has completed (purged errors)
[2026-01-09 17:48:11] 2026-01-09 22:47:04,029 | INFO     | overall cleanup function is called
[2026-01-09 17:48:11] 2026-01-09 22:47:05,036 | INFO     | --- collectZombieJob: --- 10, [31903]
[2026-01-09 17:48:11] 2026-01-09 22:47:05,036 | INFO     | zombie collector waiting for pid 31903
[2026-01-09 17:48:11] 2026-01-09 22:47:05,036 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 17:48:11] 2026-01-09 22:47:05,036 | INFO     | collected zombie processes
[2026-01-09 17:48:11] 2026-01-09 22:47:05,037 | INFO     | will attempt to kill all subprocesses of pid=31903
[2026-01-09 17:48:11] 2026-01-09 22:47:05,127 | INFO     | process IDs to be killed: [31903] (in reverse order)
[2026-01-09 17:48:11] 2026-01-09 22:47:05,181 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 17:48:11] 2026-01-09 22:47:05,181 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 17:48:11] 2026-01-09 22:47:05,186 | INFO     | did not find any defunct processes belonging to 31903
[2026-01-09 17:48:11] 2026-01-09 22:47:05,190 | INFO     | did not find any defunct processes belonging to 31903
[2026-01-09 17:48:11] 2026-01-09 22:47:05,190 | INFO     | ready for new job
[2026-01-09 17:48:11] 2026-01-09 22:47:05,190 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 17:48:11] 2026-01-09 22:47:05,192 | INFO     | ***************************************
[2026-01-09 17:48:11] 2026-01-09 22:47:05,192 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 17:48:11] 2026-01-09 22:47:05,192 | INFO     | ***************************************
[2026-01-09 17:48:11] 2026-01-09 22:47:05,193 | INFO     | 
[2026-01-09 17:48:11] 2026-01-09 22:47:05,193 | INFO     | architecture information:
[2026-01-09 17:48:11] 2026-01-09 22:47:05,194 | INFO     | executing command: cat /etc/os-release
[2026-01-09 17:48:11] 2026-01-09 22:47:05,212 | INFO     | cat /etc/os-release:
[2026-01-09 17:48:11] NAME="CentOS Linux"
[2026-01-09 17:48:11] VERSION="7 (Core)"
[2026-01-09 17:48:11] ID="centos"
[2026-01-09 17:48:11] ID_LIKE="rhel fedora"
[2026-01-09 17:48:11] VERSION_ID="7"
[2026-01-09 17:48:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 17:48:11] ANSI_COLOR="0;31"
[2026-01-09 17:48:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 17:48:11] HOME_URL="https://www.centos.org/"
[2026-01-09 17:48:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 17:48:11] 
[2026-01-09 17:48:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 17:48:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 17:48:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 17:48:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 17:48:11] 
[2026-01-09 17:48:11] 2026-01-09 22:47:05,212 | INFO     | ***************************************
[2026-01-09 17:48:11] 2026-01-09 22:47:05,715 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 17:48:11] 2026-01-09 22:47:05,737 | INFO     | sufficient remaining disk space (18492686336 B)
[2026-01-09 17:48:11] 2026-01-09 22:47:05,737 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 17:48:11] 2026-01-09 22:47:05,737 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 17:48:11] 2026-01-09 22:47:05,738 | INFO     | update_server=False
[2026-01-09 17:48:11] 2026-01-09 22:47:05,738 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 17:48:11] 2026-01-09 22:47:05,738 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 17:48:11] 2026-01-09 22:47:05,739 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 17:48:11] 2026-01-09 22:47:06,159 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 17:48:11] 2026-01-09 22:47:06,160 | INFO     | aborting loop
[2026-01-09 17:48:11] 2026-01-09 22:47:06,409 | INFO     | all job control threads have been joined
[2026-01-09 17:48:11] 2026-01-09 22:47:06,483 | INFO     | all payload control threads have been joined
[2026-01-09 17:48:11] 2026-01-09 22:47:06,505 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 17:48:11] 2026-01-09 22:47:06,520 | INFO     | all data control threads have been joined
[2026-01-09 17:48:11] 2026-01-09 22:47:06,739 | INFO     | [job] queue monitor thread has finished
[2026-01-09 17:48:11] 2026-01-09 22:47:06,742 | INFO     | [job] retrieve thread has finished
[2026-01-09 17:48:11] 2026-01-09 22:47:07,165 | INFO     | [job] job monitor thread has finished
[2026-01-09 17:48:11] 2026-01-09 22:47:07,174 | INFO     | [data] copytool_in thread has finished
[2026-01-09 17:48:11] 2026-01-09 22:47:07,177 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 17:48:11] 2026-01-09 22:47:07,231 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 17:48:11] 2026-01-09 22:47:07,414 | INFO     | [job] control thread has finished
[2026-01-09 17:48:11] 2026-01-09 22:47:07,488 | INFO     | [payload] control thread has finished
[2026-01-09 17:48:11] 2026-01-09 22:47:07,496 | INFO     | [payload] validate_post thread has finished
[2026-01-09 17:48:11] 2026-01-09 22:47:07,522 | INFO     | [data] control thread has finished
[2026-01-09 17:48:11] 2026-01-09 22:47:07,745 | INFO     | [data] copytool_out thread has finished
[2026-01-09 17:48:11] 2026-01-09 22:47:07,861 | INFO     | [payload] failed_post thread has finished
[2026-01-09 17:48:11] 2026-01-09 22:47:08,005 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 17:48:11] 2026-01-09 22:47:08,051 | INFO     | [job] validate thread has finished
[2026-01-09 17:48:11] 2026-01-09 22:47:10,511 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 17:48:11] 2026-01-09 22:47:16,367 | INFO     | job.realtimelogging is not enabled
[2026-01-09 17:48:11] 2026-01-09 22:47:17,372 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 17:48:11] 2026-01-09 22:47:36,822 | INFO     | PID=25421 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 17:48:11] 2026-01-09 22:47:36,823 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 17:48:11] 2026-01-09 22:47:36,823 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 17:48:11] 2026-01-09 22:47:36,823 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 17:48:11] 2026-01-09 22:48:04,927 | INFO     | [monitor] cgroup control has ended
[2026-01-09 17:48:11] 2026-01-09 22:48:06,140 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140368964872000)>', '<ExcThread(monitor, started 140367710119680)>']
[2026-01-09 17:48:11] 2026-01-09 22:48:06,965 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 17:48:11] 2026-01-09 22:48:06,965 | INFO     | [monitor] control thread has ended
[2026-01-09 17:48:11] 2026-01-09 22:48:11,156 | INFO     | all workflow threads have been joined
[2026-01-09 17:48:11] 2026-01-09 22:48:11,157 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 17:48:11] 2026-01-09 22:48:11,157 | INFO     | traces error code: 0
[2026-01-09 17:48:11] 2026-01-09 22:48:11,157 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 17:48:11] 2026-01-09 22:48:11,272 [wrapper] ==== pilot stdout END ====
[2026-01-09 17:48:11] 2026-01-09 22:48:11,276 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 17:48:11] 2026-01-09 22:48:11,280 [wrapper] pilotpid: 25421
[2026-01-09 17:48:11] 2026-01-09 22:48:11,284 [wrapper] Pilot exit status: 0
[2026-01-09 17:48:11] 2026-01-09 22:48:11,304 [wrapper] pandaids: 6963187359
[2026-01-09 17:48:11] 2026-01-09 22:48:11,356 [wrapper] cleanup supervisor_pilot 11241 25422
[2026-01-09 17:48:11] 2026-01-09 22:48:11,361 [wrapper] Test setup, not cleaning
[2026-01-09 17:48:11] 2026-01-09 22:48:11,367 [wrapper] apfmon messages muted
[2026-01-09 17:48:11] 2026-01-09 22:48:11,371 [wrapper] ==== wrapper stdout END ====
[2026-01-09 17:48:11] 2026-01-09 22:48:11,376 [wrapper] ==== wrapper stderr END ====
[2026-01-09 17:48:11]  *** Error codes and diagnostics ***
[2026-01-09 17:48:11]     "exeErrorCode": 0,
[2026-01-09 17:48:11]     "exeErrorDiag": "",
[2026-01-09 17:48:11]     "pilotErrorCode": 0,
[2026-01-09 17:48:11]     "pilotErrorDiag": "",
[2026-01-09 17:48:11]  *** Listing of results directory ***
[2026-01-09 17:48:11] total 446816
[2026-01-09 17:48:11] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 17:48:11] -rwx------ 1 boincer umatlas     36322 Jan  8 23:25 runpilot2-wrapper.sh
[2026-01-09 17:48:11] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 23:29 queuedata.json
[2026-01-09 17:48:11] -rw-r--r-- 1 boincer umatlas       100 Jan  9 14:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 17:48:11] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 14:45 run_atlas
[2026-01-09 17:48:11] -rw-r--r-- 1 boincer umatlas       105 Jan  9 14:45 job.xml
[2026-01-09 17:48:11] -rw-r--r-- 2 boincer umatlas 224270838 Jan  9 14:45 EVNT.47898824._001428.pool.root.1
[2026-01-09 17:48:11] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 14:45 start_atlas.sh
[2026-01-09 17:48:11] drwxrwx--x 2 boincer umatlas      4096 Jan  9 14:45 shared
[2026-01-09 17:48:11] -rw-r--r-- 2 boincer umatlas    592406 Jan  9 14:45 input.tar.gz
[2026-01-09 17:48:11] -rw-r--r-- 1 boincer umatlas         0 Jan  9 14:45 boinc_lockfile
[2026-01-09 17:48:11] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 14:45 pandaJob.out
[2026-01-09 17:48:11] -rw------- 1 boincer umatlas        57 Jan  9 14:45 setup.sh.local
[2026-01-09 17:48:11] -rw------- 1 boincer umatlas    989364 Jan  9 14:45 agis_schedconf.cvmfs.json
[2026-01-09 17:48:11] drwx------ 5 boincer umatlas      4096 Jan  9 14:45 pilot3
[2026-01-09 17:48:11] -rw-r--r-- 1 boincer umatlas      5911 Jan  9 17:39 init_data.xml
[2026-01-09 17:48:11] -rw------- 1 boincer umatlas 225525642 Jan  9 17:46 HITS.47898826._037233.pool.root.1
[2026-01-09 17:48:11] -rw-r--r-- 1 boincer umatlas       531 Jan  9 17:46 boinc_task_state.xml
[2026-01-09 17:48:11] -rw------- 1 boincer umatlas      1048 Jan  9 17:46 memory_monitor_summary.json
[2026-01-09 17:48:11] -rw------- 1 boincer umatlas   1516240 Jan  9 17:46 agis_ddmendpoints.agis.ALL.json
[2026-01-09 17:48:11] -rw------- 1 boincer umatlas    409267 Jan  9 17:46 log.47898826._037233.job.log.tgz.1
[2026-01-09 17:48:11] -rw------- 1 boincer umatlas      7848 Jan  9 17:47 heartbeat.json
[2026-01-09 17:48:11] -rw------- 1 boincer umatlas        95 Jan  9 17:47 pilot_heartbeat.json
[2026-01-09 17:48:11] -rw-r--r-- 1 boincer umatlas        28 Jan  9 17:47 wrapper_checkpoint.txt
[2026-01-09 17:48:11] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 17:47 boinc_mmap_file
[2026-01-09 17:48:11] -rw------- 1 boincer umatlas      4818 Jan  9 17:48 pilotlog.txt
[2026-01-09 17:48:11] -rw------- 1 boincer umatlas   1504962 Jan  9 17:48 log.47898826._037233.job.log.1
[2026-01-09 17:48:11] -rw------- 1 boincer umatlas       357 Jan  9 17:48 output.list
[2026-01-09 17:48:11] -rw-r--r-- 1 boincer umatlas       620 Jan  9 17:48 runtime_log
[2026-01-09 17:48:11] -rw------- 1 boincer umatlas   1935360 Jan  9 17:48 result.tar.gz
[2026-01-09 17:48:11] -rw------- 1 boincer umatlas       662 Jan  9 17:48 vYWMDmvEJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIJmKDmPFTyym.diag
[2026-01-09 17:48:11] -rw-r--r-- 1 boincer umatlas      9343 Jan  9 17:48 runtime_log.err
[2026-01-09 17:48:11] -rw-r--r-- 1 boincer umatlas     21413 Jan  9 17:48 stderr.txt
[2026-01-09 17:48:11] HITS file was successfully produced:
[2026-01-09 17:48:11] -rw------- 1 boincer umatlas 225525642 Jan  9 17:46 shared/HITS.pool.root.1
[2026-01-09 17:48:11]  *** Contents of shared directory: ***
[2026-01-09 17:48:11] total 441748
[2026-01-09 17:48:11] -rw-r--r-- 2 boincer umatlas 224270838 Jan  9 14:45 ATLAS.root_0
[2026-01-09 17:48:11] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 14:45 start_atlas.sh
[2026-01-09 17:48:11] -rw-r--r-- 2 boincer umatlas    592406 Jan  9 14:45 input.tar.gz
[2026-01-09 17:48:11] -rw------- 1 boincer umatlas 225525642 Jan  9 17:46 HITS.pool.root.1
[2026-01-09 17:48:11] -rw------- 1 boincer umatlas   1935360 Jan  9 17:48 result.tar.gz
17:48:13 (21735): run_atlas exited; CPU time 81630.860789
17:48:13 (21735): called boinc_finish(0)

</stderr_txt>
]]>

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