Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:16:27 (25175): wrapper (7.7.26015): starting
00:16:27 (25175): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 00:16:27] Arguments: --nthreads 8
[2026-01-10 00:16:27] Threads: 8
[2026-01-10 00:16:27] Checking for CVMFS
[2026-01-10 00:16:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 00:16:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 00:16:29] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 00:16:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 00:16:31] 2.11.2.0 25330 36041 129680 154960 0 63 17164940 25165825 899 130560 0 16586986 99.793 11240277 3565 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-10 00:16:31] CVMFS is ok
[2026-01-10 00:16:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 00:16:31] Checking for apptainer binary...
[2026-01-10 00:16:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 00:16:31] Running /usr/bin/apptainer --version
[2026-01-10 00:16:31] apptainer version 1.3.2-1.el7
[2026-01-10 00:16:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 00:16:52] cg-vwn437.simple-grid.lan
[2026-01-10 00:16:52] apptainer works
[2026-01-10 00:16:52] Set ATHENA_PROC_NUMBER=8
[2026-01-10 00:16:52] Set ATHENA_CORE_NUMBER=8
[2026-01-10 00:16:52] Starting ATLAS job with PandaID=6963585793
[2026-01-10 00:16:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 06:42:06]  *** The last 200 lines of the pilot log: ***
[2026-01-10 06:42:06] 2026-01-10 05:41:15,370 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-10 06:42:06] 2026-01-10 05:41:15,372 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6963585793/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 06:42:06] 2026-01-10 05:41:15,373 | INFO     | extracted standard info from prmon json
[2026-01-10 06:42:06] 2026-01-10 05:41:15,373 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 06:42:06] 2026-01-10 05:41:15,373 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 06:42:06] 2026-01-10 05:41:15,373 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 06:42:06] 2026-01-10 05:41:15,373 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 06:42:06] 2026-01-10 05:41:15,390 | INFO     | fitting pss+swap vs Time
[2026-01-10 06:42:06] 2026-01-10 05:41:15,391 | INFO     | sum of square deviations: 14831839022.0
[2026-01-10 06:42:06] 2026-01-10 05:41:15,395 | INFO     | sum of deviations: 184270331099.99994
[2026-01-10 06:42:06] 2026-01-10 05:41:15,395 | INFO     | mean x: 1768012452.0
[2026-01-10 06:42:06] 2026-01-10 05:41:15,396 | INFO     | mean y: 2456784.1818181816
[2026-01-10 06:42:06] 2026-01-10 05:41:15,396 | INFO     | intersect: -21963277838.18811
[2026-01-10 06:42:06] 2026-01-10 05:41:15,396 | INFO     | chi2: 8.928219588003815
[2026-01-10 06:42:06] 2026-01-10 05:41:15,397 | INFO     | sum of square deviations: 14227353269.5
[2026-01-10 06:42:06] 2026-01-10 05:41:15,417 | INFO     | sum of deviations: 205740247614.49997
[2026-01-10 06:42:06] 2026-01-10 05:41:15,417 | INFO     | mean x: 1768012299.5
[2026-01-10 06:42:06] 2026-01-10 05:41:15,418 | INFO     | mean y: 2462132.723463687
[2026-01-10 06:42:06] 2026-01-10 05:41:15,418 | INFO     | intersect: -25564576331.44444
[2026-01-10 06:42:06] 2026-01-10 05:41:15,418 | INFO     | chi2: 8.215807556269803
[2026-01-10 06:42:06] 2026-01-10 05:41:15,418 | INFO     | current chi2=8.215807556269803 (change=7.979329190012605 %)
[2026-01-10 06:42:06] 2026-01-10 05:41:15,419 | INFO     | right removable region: 357
[2026-01-10 06:42:06] 2026-01-10 05:41:15,419 | INFO     | sum of square deviations: 14227353269.5
[2026-01-10 06:42:06] 2026-01-10 05:41:15,423 | INFO     | sum of deviations: 57582650252.999954
[2026-01-10 06:42:06] 2026-01-10 05:41:15,424 | INFO     | mean x: 1768012604.5
[2026-01-10 06:42:06] 2026-01-10 05:41:15,424 | INFO     | mean y: 2488730.994413408
[2026-01-10 06:42:06] 2026-01-10 05:41:15,424 | INFO     | intersect: -7153223896.600788
[2026-01-10 06:42:06] 2026-01-10 05:41:15,424 | INFO     | chi2: 4.091090181435848
[2026-01-10 06:42:06] 2026-01-10 05:41:15,425 | INFO     | current chi2=4.091090181435848 (change=54.177984298989 %)
[2026-01-10 06:42:06] 2026-01-10 05:41:15,425 | INFO     | sum of square deviations: 13639518992.0
[2026-01-10 06:42:06] 2026-01-10 05:41:15,437 | INFO     | sum of deviations: -41710786180.0
[2026-01-10 06:42:06] 2026-01-10 05:41:15,438 | INFO     | mean x: 1768012757.0
[2026-01-10 06:42:06] 2026-01-10 05:41:15,438 | INFO     | mean y: 2514469.640226629
[2026-01-10 06:42:06] 2026-01-10 05:41:15,438 | INFO     | intersect: 5409244876.628416
[2026-01-10 06:42:06] 2026-01-10 05:41:15,438 | INFO     | chi2: 1.2665875362541068
[2026-01-10 06:42:06] 2026-01-10 05:41:15,439 | INFO     | current chi2=1.2665875362541068 (change=69.04034181398629 %)
[2026-01-10 06:42:06] 2026-01-10 05:41:15,439 | INFO     | sum of square deviations: 13068103627.0
[2026-01-10 06:42:06] 2026-01-10 05:41:15,443 | INFO     | sum of deviations: -65139586971.49999
[2026-01-10 06:42:06] 2026-01-10 05:41:15,443 | INFO     | mean x: 1768012909.5
[2026-01-10 06:42:06] 2026-01-10 05:41:15,443 | INFO     | mean y: 2520682.525862069
[2026-01-10 06:42:06] 2026-01-10 05:41:15,443 | INFO     | intersect: 8815400804.409975
[2026-01-10 06:42:06] 2026-01-10 05:41:15,444 | INFO     | chi2: 0.9858362223598751
[2026-01-10 06:42:06] 2026-01-10 05:41:15,444 | INFO     | current chi2=0.9858362223598751 (change=22.16596215091023 %)
[2026-01-10 06:42:06] 2026-01-10 05:41:15,444 | INFO     | left removable region: 30
[2026-01-10 06:42:06] 2026-01-10 05:41:15,445 | INFO     | sum of square deviations: 10842205148.0
[2026-01-10 06:42:06] 2026-01-10 05:41:15,449 | INFO     | sum of deviations: -18892750053.999985
[2026-01-10 06:42:06] 2026-01-10 05:41:15,449 | INFO     | mean x: 1768013184.0
[2026-01-10 06:42:06] 2026-01-10 05:41:15,449 | INFO     | mean y: 2520616.232415902
[2026-01-10 06:42:06] 2026-01-10 05:41:15,449 | INFO     | intersect: 3083317439.529038
[2026-01-10 06:42:06] 2026-01-10 05:41:15,450 | INFO     | chi2: 0.13781917160308027
[2026-01-10 06:42:06] 2026-01-10 05:41:15,450 | INFO     | current memory leak: -1.74 B/s (using 327 data points, chi2=0.14)
[2026-01-10 06:42:06] 2026-01-10 05:41:15,451 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-01-10 06:42:06] 2026-01-10 05:41:15,451 | INFO     | ..............................
[2026-01-10 06:42:06] 2026-01-10 05:41:15,451 | INFO     | . Timing measurements:
[2026-01-10 06:42:06] 2026-01-10 05:41:15,451 | INFO     | . get job = 0 s
[2026-01-10 06:42:06] 2026-01-10 05:41:15,451 | INFO     | . initial setup = 11 s
[2026-01-10 06:42:06] 2026-01-10 05:41:15,452 | INFO     | . payload setup = 156 s
[2026-01-10 06:42:06] 2026-01-10 05:41:15,452 | INFO     | . stage-in = 0 s
[2026-01-10 06:42:06] 2026-01-10 05:41:15,452 | INFO     | . payload execution = 22298 s
[2026-01-10 06:42:06] 2026-01-10 05:41:15,452 | INFO     | . stage-out = 4 s
[2026-01-10 06:42:06] 2026-01-10 05:41:15,452 | INFO     | . log creation = 1 s
[2026-01-10 06:42:06] 2026-01-10 05:41:15,452 | INFO     | ..............................
[2026-01-10 06:42:06] 2026-01-10 05:41:15,597 | INFO     | 
[2026-01-10 06:42:06] 2026-01-10 05:41:15,597 | INFO     | job summary report
[2026-01-10 06:42:06] 2026-01-10 05:41:15,598 | INFO     | --------------------------------------------------
[2026-01-10 06:42:06] 2026-01-10 05:41:15,598 | INFO     | PanDA job id: 6963585793
[2026-01-10 06:42:06] 2026-01-10 05:41:15,598 | INFO     | task id: 47898826
[2026-01-10 06:42:06] 2026-01-10 05:41:15,598 | INFO     | errors: (none)
[2026-01-10 06:42:06] 2026-01-10 05:41:15,598 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 06:42:06] 2026-01-10 05:41:15,598 | INFO     | pilot state: finished 
[2026-01-10 06:42:06] 2026-01-10 05:41:15,598 | INFO     | transexitcode: 0
[2026-01-10 06:42:06] 2026-01-10 05:41:15,598 | INFO     | exeerrorcode: 0
[2026-01-10 06:42:06] 2026-01-10 05:41:15,598 | INFO     | exeerrordiag: 
[2026-01-10 06:42:06] 2026-01-10 05:41:15,598 | INFO     | exitcode: 0
[2026-01-10 06:42:06] 2026-01-10 05:41:15,599 | INFO     | exitmsg: OK
[2026-01-10 06:42:06] 2026-01-10 05:41:15,599 | INFO     | cpuconsumptiontime: 82777 s
[2026-01-10 06:42:06] 2026-01-10 05:41:15,599 | INFO     | nevents: 400
[2026-01-10 06:42:06] 2026-01-10 05:41:15,599 | INFO     | neventsw: 0
[2026-01-10 06:42:06] 2026-01-10 05:41:15,599 | INFO     | pid: 2999
[2026-01-10 06:42:06] 2026-01-10 05:41:15,599 | INFO     | pgrp: 2999
[2026-01-10 06:42:06] 2026-01-10 05:41:15,599 | INFO     | corecount: 8
[2026-01-10 06:42:06] 2026-01-10 05:41:15,599 | INFO     | event service: False
[2026-01-10 06:42:06] 2026-01-10 05:41:15,599 | INFO     | sizes: {0: 2283091, 1: 2283947, 2: 2283947, 13: 2283975, 23: 2284031, 34: 2284059, 45: 2284215, 56: 2284243, 66: 2284271, 77: 2284299, 88: 2284355, 98: 2284663, 10
[2026-01-10 06:42:06] 2026-01-10 05:41:15,599 | INFO     | --------------------------------------------------
[2026-01-10 06:42:06] 2026-01-10 05:41:15,600 | INFO     | 
[2026-01-10 06:42:06] 2026-01-10 05:41:15,600 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-01-10 06:42:06] 2026-01-10 05:41:16,324 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 06:42:06] 2026-01-10 05:41:16,324 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 06:42:06] 2026-01-10 05:41:16,324 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 06:42:06] 2026-01-10 05:41:16,325 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 06:42:06] 2026-01-10 05:41:16,325 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 06:42:06] 2026-01-10 05:41:16,325 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 06:42:06] 2026-01-10 05:41:16,325 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 06:42:06] 2026-01-10 05:41:16,325 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 06:42:06] 2026-01-10 05:41:16,325 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 06:42:06] 2026-01-10 05:41:16,325 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 06:42:06] 2026-01-10 05:41:16,325 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 06:42:06] 2026-01-10 05:41:16,325 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 06:42:06] 2026-01-10 05:41:16,326 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 06:42:06] 2026-01-10 05:41:16,326 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 06:42:06] 2026-01-10 05:41:16,326 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 06:42:06] 2026-01-10 05:41:16,326 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 06:42:06] 2026-01-10 05:41:16,326 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 06:42:06] 2026-01-10 05:41:16,326 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 06:42:06] 2026-01-10 05:41:16,326 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 06:42:06] 2026-01-10 05:41:16,326 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 06:42:06] 2026-01-10 05:41:16,326 | INFO     | job 6963585793 has completed (purged errors)
[2026-01-10 06:42:06] 2026-01-10 05:41:16,327 | INFO     | overall cleanup function is called
[2026-01-10 06:42:06] 2026-01-10 05:41:17,335 | INFO     | --- collectZombieJob: --- 10, [2999]
[2026-01-10 06:42:06] 2026-01-10 05:41:17,336 | INFO     | zombie collector waiting for pid 2999
[2026-01-10 06:42:06] 2026-01-10 05:41:17,336 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 06:42:06] 2026-01-10 05:41:17,336 | INFO     | collected zombie processes
[2026-01-10 06:42:06] 2026-01-10 05:41:17,336 | INFO     | will attempt to kill all subprocesses of pid=2999
[2026-01-10 06:42:06] 2026-01-10 05:41:17,411 | INFO     | process IDs to be killed: [2999] (in reverse order)
[2026-01-10 06:42:06] 2026-01-10 05:41:18,327 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 06:42:06] 2026-01-10 05:41:18,327 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 06:42:06] 2026-01-10 05:41:18,330 | INFO     | did not find any defunct processes belonging to 2999
[2026-01-10 06:42:06] 2026-01-10 05:41:18,331 | INFO     | did not find any defunct processes belonging to 2999
[2026-01-10 06:42:06] 2026-01-10 05:41:18,332 | INFO     | ready for new job
[2026-01-10 06:42:06] 2026-01-10 05:41:18,332 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 06:42:06] 2026-01-10 05:41:18,334 | INFO     | ***************************************
[2026-01-10 06:42:06] 2026-01-10 05:41:18,334 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 06:42:06] 2026-01-10 05:41:18,334 | INFO     | ***************************************
[2026-01-10 06:42:06] 2026-01-10 05:41:18,335 | INFO     | 
[2026-01-10 06:42:06] 2026-01-10 05:41:18,335 | INFO     | pilot is running in a VM
[2026-01-10 06:42:06] 2026-01-10 05:41:18,335 | INFO     | architecture information:
[2026-01-10 06:42:06] 2026-01-10 05:41:18,336 | INFO     | executing command: cat /etc/os-release
[2026-01-10 06:42:06] 2026-01-10 05:41:18,420 | INFO     | cat /etc/os-release:
[2026-01-10 06:42:06] NAME="CentOS Linux"
[2026-01-10 06:42:06] VERSION="7 (Core)"
[2026-01-10 06:42:06] ID="centos"
[2026-01-10 06:42:06] ID_LIKE="rhel fedora"
[2026-01-10 06:42:06] VERSION_ID="7"
[2026-01-10 06:42:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 06:42:06] ANSI_COLOR="0;31"
[2026-01-10 06:42:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 06:42:06] HOME_URL="https://www.centos.org/"
[2026-01-10 06:42:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 06:42:06] 
[2026-01-10 06:42:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 06:42:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 06:42:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 06:42:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 06:42:06] 
[2026-01-10 06:42:06] 2026-01-10 05:41:18,420 | INFO     | ***************************************
[2026-01-10 06:42:06] 2026-01-10 05:41:18,924 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-01-10 06:42:06] 2026-01-10 05:41:19,186 | INFO     | sufficient remaining disk space (497316528128 B)
[2026-01-10 06:42:06] 2026-01-10 05:41:19,186 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 06:42:06] 2026-01-10 05:41:19,187 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 06:42:06] 2026-01-10 05:41:19,187 | INFO     | update_server=False
[2026-01-10 06:42:06] 2026-01-10 05:41:19,187 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 06:42:06] 2026-01-10 05:41:19,187 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 06:42:06] 2026-01-10 05:41:19,204 | INFO     | all payload control threads have been joined
[2026-01-10 06:42:06] 2026-01-10 05:41:19,564 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 06:42:06] 2026-01-10 05:41:19,565 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 06:42:06] 2026-01-10 05:41:19,565 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 06:42:06] 2026-01-10 05:41:19,565 | INFO     | will abort loop
[2026-01-10 06:42:06] 2026-01-10 05:41:19,823 | INFO     | all job control threads have been joined
[2026-01-10 06:42:06] 2026-01-10 05:41:20,085 | INFO     | all data control threads have been joined
[2026-01-10 06:42:06] 2026-01-10 05:41:20,192 | INFO     | [job] retrieve thread has finished
[2026-01-10 06:42:06] 2026-01-10 05:41:20,211 | INFO     | [payload] control thread has finished
[2026-01-10 06:42:06] 2026-01-10 05:41:20,233 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 06:42:06] 2026-01-10 05:41:20,294 | INFO     | [data] copytool_in thread has finished
[2026-01-10 06:42:06] 2026-01-10 05:41:20,430 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 06:42:06] 2026-01-10 05:41:20,471 | INFO     | [payload] validate_post thread has finished
[2026-01-10 06:42:06] 2026-01-10 05:41:20,570 | INFO     | [job] job monitor thread has finished
[2026-01-10 06:42:06] 2026-01-10 05:41:20,611 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 06:42:06] 2026-01-10 05:41:20,829 | INFO     | [job] control thread has finished
[2026-01-10 06:42:06] 2026-01-10 05:41:20,971 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 06:42:06] 2026-01-10 05:41:21,091 | INFO     | [data] control thread has finished
[2026-01-10 06:42:06] 2026-01-10 05:41:21,166 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 06:42:06] 2026-01-10 05:41:21,194 | INFO     | [data] copytool_out thread has finished
[2026-01-10 06:42:06] 2026-01-10 05:41:21,254 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 06:42:06] 2026-01-10 05:41:21,449 | INFO     | [job] validate thread has finished
[2026-01-10 06:42:06] 2026-01-10 05:41:21,617 | INFO     | [job] queue monitor thread has finished
[2026-01-10 06:42:06] 2026-01-10 05:41:21,631 | INFO     | [payload] failed_post thread has finished
[2026-01-10 06:42:06] 2026-01-10 05:41:25,263 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 06:42:06] 2026-01-10 05:41:47,630 | INFO     | PID=28937 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 06:42:06] 2026-01-10 05:41:47,630 | INFO     | .. there are 2 such processes running
[2026-01-10 06:42:06] 2026-01-10 05:41:47,631 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 06:42:06] 2026-01-10 05:41:47,631 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 06:42:06] 2026-01-10 05:41:47,631 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 06:42:06] 2026-01-10 05:41:53,316 | INFO     | [monitor] cgroup control has ended
[2026-01-10 06:42:06] 2026-01-10 05:41:55,150 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139849028204352)>', '<ExcThread(monitor, started 139848295905024)>']
[2026-01-10 06:42:06] 2026-01-10 05:41:55,677 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 06:42:06] 2026-01-10 05:41:55,678 | INFO     | [monitor] control thread has ended
[2026-01-10 06:42:06] 2026-01-10 05:42:00,176 | INFO     | all workflow threads have been joined
[2026-01-10 06:42:06] 2026-01-10 05:42:00,177 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 06:42:06] 2026-01-10 05:42:00,177 | INFO     | traces error code: 0
[2026-01-10 06:42:06] 2026-01-10 05:42:00,177 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 06:42:06] 2026-01-10 05:42:00,554 [wrapper] ==== pilot stdout END ====
[2026-01-10 06:42:06] 2026-01-10 05:42:00,638 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 06:42:06] 2026-01-10 05:42:00,719 [wrapper] pilotpid: 28937
[2026-01-10 06:42:06] 2026-01-10 05:42:00,833 [wrapper] Pilot exit status: 0
[2026-01-10 06:42:06] 2026-01-10 05:42:01,377 [wrapper] pandaids: 6963585793
[2026-01-10 06:42:06] 2026-01-10 05:42:02,396 [wrapper] cleanup supervisor_pilot  4658 28938
[2026-01-10 06:42:06] 2026-01-10 05:42:02,492 [wrapper] Test setup, not cleaning
[2026-01-10 06:42:06] 2026-01-10 05:42:02,618 [wrapper] apfmon messages muted
[2026-01-10 06:42:06] 2026-01-10 05:42:02,726 [wrapper] ==== wrapper stdout END ====
[2026-01-10 06:42:06] 2026-01-10 05:42:02,788 [wrapper] ==== wrapper stderr END ====
[2026-01-10 06:42:06]  *** Error codes and diagnostics ***
[2026-01-10 06:42:06]     "exeErrorCode": 0,
[2026-01-10 06:42:06]     "exeErrorDiag": "",
[2026-01-10 06:42:06]     "pilotErrorCode": 0,
[2026-01-10 06:42:06]     "pilotErrorDiag": "",
[2026-01-10 06:42:06]  *** Listing of results directory ***
[2026-01-10 06:42:06] total 446188
[2026-01-10 06:42:06] -rw-r--r--. 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 06:42:06] -rwx------. 1 boinc boinc     36322 Jan  9 05:23 runpilot2-wrapper.sh
[2026-01-10 06:42:06] -rw-r--r--. 1 boinc boinc      5112 Jan  9 05:26 queuedata.json
[2026-01-10 06:42:06] -rw-r--r--. 1 boinc boinc       100 Jan 10 00:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 06:42:06] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 00:16 run_atlas
[2026-01-10 06:42:06] -rw-r--r--. 1 boinc boinc       105 Jan 10 00:16 job.xml
[2026-01-10 06:42:06] -rw-r--r--. 1 boinc boinc      6390 Jan 10 00:16 init_data.xml
[2026-01-10 06:42:06] -rw-r--r--. 2 boinc boinc 225032733 Jan 10 00:16 EVNT.47898824._000979.pool.root.1
[2026-01-10 06:42:06] -rw-r--r--. 2 boinc boinc     15847 Jan 10 00:16 start_atlas.sh
[2026-01-10 06:42:06] drwxrwx--x. 2 boinc boinc        68 Jan 10 00:16 shared
[2026-01-10 06:42:06] -rw-r--r--. 2 boinc boinc    592407 Jan 10 00:16 input.tar.gz
[2026-01-10 06:42:06] -rw-r--r--. 1 boinc boinc         0 Jan 10 00:16 boinc_lockfile
[2026-01-10 06:42:06] -rw-r--r--. 1 boinc boinc      2519 Jan 10 00:16 pandaJob.out
[2026-01-10 06:42:06] -rw-------. 1 boinc boinc    989374 Jan 10 00:21 agis_schedconf.cvmfs.json
[2026-01-10 06:42:06] drwx------. 5 boinc boinc      4096 Jan 10 00:21 pilot3
[2026-01-10 06:42:06] -rw-------. 1 boinc boinc 220813495 Jan 10 06:37 HITS.47898826._039672.pool.root.1
[2026-01-10 06:42:06] -rw-r--r--. 1 boinc boinc       531 Jan 10 06:38 boinc_task_state.xml
[2026-01-10 06:42:06] -rw-------. 1 boinc boinc      1012 Jan 10 06:39 memory_monitor_summary.json
[2026-01-10 06:42:06] -rw-------. 1 boinc boinc   1516240 Jan 10 06:39 agis_ddmendpoints.agis.ALL.json
[2026-01-10 06:42:06] -rw-------. 1 boinc boinc    555960 Jan 10 06:39 log.47898826._039672.job.log.tgz.1
[2026-01-10 06:42:06] -rw-------. 1 boinc boinc        95 Jan 10 06:41 pilot_heartbeat.json
[2026-01-10 06:42:06] -rw-------. 1 boinc boinc      7775 Jan 10 06:41 heartbeat.json
[2026-01-10 06:42:06] -rw-r--r--. 1 boinc boinc      8192 Jan 10 06:41 boinc_mmap_file
[2026-01-10 06:42:06] -rw-r--r--. 1 boinc boinc        28 Jan 10 06:41 wrapper_checkpoint.txt
[2026-01-10 06:42:06] -rw-------. 1 boinc boinc      5070 Jan 10 06:42 pilotlog.txt
[2026-01-10 06:42:06] -rw-------. 1 boinc boinc   3020799 Jan 10 06:42 log.47898826._039672.job.log.1
[2026-01-10 06:42:06] -rw-------. 1 boinc boinc       357 Jan 10 06:42 output.list
[2026-01-10 06:42:06] -rw-r--r--. 1 boinc boinc       620 Jan 10 06:42 runtime_log
[2026-01-10 06:42:06] -rw-------. 1 boinc boinc   3594240 Jan 10 06:42 result.tar.gz
[2026-01-10 06:42:06] -rw-r--r--. 1 boinc boinc      8817 Jan 10 06:42 runtime_log.err
[2026-01-10 06:42:06] -rw-------. 1 boinc boinc       657 Jan 10 06:42 84SMDmHDJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRGmKDmPj1Vrn.diag
[2026-01-10 06:42:06] -rw-r--r--. 1 boinc boinc     20784 Jan 10 06:42 stderr.txt
[2026-01-10 06:42:06] HITS file was successfully produced:
[2026-01-10 06:42:06] -rw-------. 1 boinc boinc 220813495 Jan 10 06:37 shared/HITS.pool.root.1
[2026-01-10 06:42:06]  *** Contents of shared directory: ***
[2026-01-10 06:42:06] total 439508
[2026-01-10 06:42:06] -rw-r--r--. 2 boinc boinc 225032733 Jan 10 00:16 ATLAS.root_0
[2026-01-10 06:42:06] -rw-r--r--. 2 boinc boinc     15847 Jan 10 00:16 start_atlas.sh
[2026-01-10 06:42:06] -rw-r--r--. 2 boinc boinc    592407 Jan 10 00:16 input.tar.gz
[2026-01-10 06:42:06] -rw-------. 1 boinc boinc 220813495 Jan 10 06:37 HITS.pool.root.1
[2026-01-10 06:42:06] -rw-------. 1 boinc boinc   3594240 Jan 10 06:42 result.tar.gz
06:42:07 (25175): run_atlas exited; CPU time 83003.231992
06:42:07 (25175): called boinc_finish(0)

</stderr_txt>
]]>

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