Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:27:43 (216664): wrapper (7.7.26015): starting
15:27:43 (216664): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 15:27:43] Arguments: --nthreads 8
[2026-01-09 15:27:43] Threads: 8
[2026-01-09 15:27:43] Checking for CVMFS
[2026-01-09 15:27:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 15:27:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 15:27:44] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 15:27:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 15:27:46] 2.13.3.0 12004 93843 412264 154956 2 161 18089034 32935936 21765 16776704 0 366027851 99.521 476220221 33692 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 15:27:46] CVMFS is ok
[2026-01-09 15:27:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 15:27:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 15:27:46] Further information can be found at the LHC@home message board.
[2026-01-09 15:27:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 15:27:46] Checking for apptainer binary...
[2026-01-09 15:27:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 15:27:46] Running /usr/bin/apptainer --version
[2026-01-09 15:27:46] apptainer version 1.4.5-2.el9
[2026-01-09 15:27:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 15:27:47] c6-12-29-4.aglt2.org
[2026-01-09 15:27:47] apptainer works
[2026-01-09 15:27:47] Set ATHENA_PROC_NUMBER=8
[2026-01-09 15:27:47] Set ATHENA_CORE_NUMBER=8
[2026-01-09 15:27:47] Starting ATLAS job with PandaID=6963193626
[2026-01-09 15:27:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 20:34:55]  *** The last 200 lines of the pilot log: ***
[2026-01-09 20:34:55] 2026-01-10 01:34:14,986 | INFO     | time since job start (18319s) is within the limit (349056.0s)
[2026-01-09 20:34:55] 2026-01-10 01:34:16,992 | INFO     | time since job start (18321s) is within the limit (349056.0s)
[2026-01-09 20:34:55] 2026-01-10 01:34:17,322 | INFO     | monitor loop #1161: job 0:6963193626 is in state 'finished'
[2026-01-09 20:34:55] 2026-01-10 01:34:17,322 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:34:55] 2026-01-10 01:34:19,401 | INFO     | PID=222578 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 20:34:55] 2026-01-10 01:34:19,423 | INFO     | .. there are 17 such processes running
[2026-01-09 20:34:55] 2026-01-10 01:34:19,854 | INFO     | monitor loop #1162: job 0:6963193626 is in state 'finished'
[2026-01-09 20:34:55] 2026-01-10 01:34:19,855 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:34:55] 2026-01-10 01:34:19,904 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 20:34:55] 2026-01-10 01:34:19,945 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2584.1718333333333
[2026-01-09 20:34:55] 2026-01-10 01:34:20,004 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6963193626/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 20:34:55] 2026-01-10 01:34:20,005 | INFO     | extracted standard info from prmon json
[2026-01-09 20:34:55] 2026-01-10 01:34:20,005 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 20:34:55] 2026-01-10 01:34:20,005 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 20:34:55] 2026-01-10 01:34:20,005 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 20:34:55] 2026-01-10 01:34:20,005 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 20:34:55] 2026-01-10 01:34:20,024 | INFO     | fitting pss+swap vs Time
[2026-01-09 20:34:55] 2026-01-10 01:34:20,025 | INFO     | sum of square deviations: 8205734901.345646
[2026-01-09 20:34:55] 2026-01-10 01:34:20,031 | INFO     | sum of deviations: -41661465863.60403
[2026-01-09 20:34:55] 2026-01-10 01:34:20,032 | INFO     | mean x: 1767999724.8892617
[2026-01-09 20:34:55] 2026-01-10 01:34:20,032 | INFO     | mean y: 2535535.436241611
[2026-01-09 20:34:55] 2026-01-10 01:34:20,032 | INFO     | intersect: 8978874775.113155
[2026-01-09 20:34:55] 2026-01-10 01:34:20,032 | INFO     | chi2: 3.125424390641495
[2026-01-09 20:34:55] 2026-01-10 01:34:20,033 | INFO     | sum of square deviations: 7799613828.07503
[2026-01-09 20:34:55] 2026-01-10 01:34:20,035 | INFO     | sum of deviations: -22181679151.522163
[2026-01-09 20:34:55] 2026-01-10 01:34:20,035 | INFO     | mean x: 1767999572.3959045
[2026-01-09 20:34:55] 2026-01-10 01:34:20,036 | INFO     | mean y: 2542754.0648464165
[2026-01-09 20:34:55] 2026-01-10 01:34:20,036 | INFO     | intersect: 5030637749.454287
[2026-01-09 20:34:55] 2026-01-10 01:34:20,036 | INFO     | chi2: 2.4539986362768764
[2026-01-09 20:34:55] 2026-01-10 01:34:20,036 | INFO     | current chi2=2.4539986362768764 (change=21.482706680573642 %)
[2026-01-09 20:34:55] 2026-01-10 01:34:20,036 | INFO     | right removable region: 292
[2026-01-09 20:34:55] 2026-01-10 01:34:20,037 | INFO     | sum of square deviations: 7799543068.07503
[2026-01-09 20:34:55] 2026-01-10 01:34:20,039 | INFO     | sum of deviations: -100772871422.86694
[2026-01-09 20:34:55] 2026-01-10 01:34:20,039 | INFO     | mean x: 1767999877.3959045
[2026-01-09 20:34:55] 2026-01-10 01:34:20,039 | INFO     | mean y: 2557596.6109215016
[2026-01-09 20:34:55] 2026-01-10 01:34:20,039 | INFO     | intersect: 22845745045.59496
[2026-01-09 20:34:55] 2026-01-10 01:34:20,040 | INFO     | chi2: 1.1512345429612802
[2026-01-09 20:34:55] 2026-01-10 01:34:20,040 | INFO     | current chi2=1.1512345429612802 (change=63.16549693512218 %)
[2026-01-09 20:34:55] 2026-01-10 01:34:20,040 | INFO     | sum of square deviations: 7407032403.663213
[2026-01-09 20:34:55] 2026-01-10 01:34:20,043 | INFO     | sum of deviations: -102606491189.26384
[2026-01-09 20:34:55] 2026-01-10 01:34:20,043 | INFO     | mean x: 1768000029.8923612
[2026-01-09 20:34:55] 2026-01-10 01:34:20,043 | INFO     | mean y: 2558298.152777778
[2026-01-09 20:34:55] 2026-01-10 01:34:20,043 | INFO     | intersect: 24493915916.630554
[2026-01-09 20:34:55] 2026-01-10 01:34:20,044 | INFO     | chi2: 1.130410707163695
[2026-01-09 20:34:55] 2026-01-10 01:34:20,044 | INFO     | current chi2=1.130410707163695 (change=1.8088265266972232 %)
[2026-01-09 20:34:55] 2026-01-10 01:34:20,044 | INFO     | left removable region: 20
[2026-01-09 20:34:55] 2026-01-10 01:34:20,044 | INFO     | sum of square deviations: 6239906638.235255
[2026-01-09 20:34:55] 2026-01-10 01:34:20,046 | INFO     | sum of deviations: -59538573221.00001
[2026-01-09 20:34:55] 2026-01-10 01:34:20,046 | INFO     | mean x: 1768000151.8823528
[2026-01-09 20:34:55] 2026-01-10 01:34:20,047 | INFO     | mean y: 2556432.0
[2026-01-09 20:34:55] 2026-01-10 01:34:20,047 | INFO     | intersect: 16872072692.479979
[2026-01-09 20:34:55] 2026-01-10 01:34:20,047 | INFO     | chi2: 0.38196885651941104
[2026-01-09 20:34:55] 2026-01-10 01:34:20,047 | INFO     | current memory leak: -9.54 B/s (using 272 data points, chi2=0.38)
[2026-01-09 20:34:55] 2026-01-10 01:34:20,048 | INFO     | could have reported an average CPU frequency of 2627 MHz (13 samples)
[2026-01-09 20:34:55] 2026-01-10 01:34:20,048 | INFO     | ..............................
[2026-01-09 20:34:55] 2026-01-10 01:34:20,048 | INFO     | . Timing measurements:
[2026-01-09 20:34:55] 2026-01-10 01:34:20,048 | INFO     | . get job = 0 s
[2026-01-09 20:34:55] 2026-01-10 01:34:20,048 | INFO     | . initial setup = 4 s
[2026-01-09 20:34:55] 2026-01-10 01:34:20,048 | INFO     | . payload setup = 38 s
[2026-01-09 20:34:55] 2026-01-10 01:34:20,048 | INFO     | . stage-in = 0 s
[2026-01-09 20:34:55] 2026-01-10 01:34:20,049 | INFO     | . payload execution = 18180 s
[2026-01-09 20:34:55] 2026-01-10 01:34:20,049 | INFO     | . stage-out = 3 s
[2026-01-09 20:34:55] 2026-01-10 01:34:20,049 | INFO     | . log creation = 0 s
[2026-01-09 20:34:55] 2026-01-10 01:34:20,049 | INFO     | ..............................
[2026-01-09 20:34:55] 2026-01-10 01:34:20,158 | INFO     | 
[2026-01-09 20:34:55] 2026-01-10 01:34:20,158 | INFO     | job summary report
[2026-01-09 20:34:55] 2026-01-10 01:34:20,158 | INFO     | --------------------------------------------------
[2026-01-09 20:34:55] 2026-01-10 01:34:20,158 | INFO     | PanDA job id: 6963193626
[2026-01-09 20:34:55] 2026-01-10 01:34:20,159 | INFO     | task id: 47898826
[2026-01-09 20:34:55] 2026-01-10 01:34:20,159 | INFO     | errors: (none)
[2026-01-09 20:34:55] 2026-01-10 01:34:20,159 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 20:34:55] 2026-01-10 01:34:20,159 | INFO     | pilot state: finished 
[2026-01-09 20:34:55] 2026-01-10 01:34:20,159 | INFO     | transexitcode: 0
[2026-01-09 20:34:55] 2026-01-10 01:34:20,159 | INFO     | exeerrorcode: 0
[2026-01-09 20:34:55] 2026-01-10 01:34:20,159 | INFO     | exeerrordiag: 
[2026-01-09 20:34:55] 2026-01-10 01:34:20,159 | INFO     | exitcode: 0
[2026-01-09 20:34:55] 2026-01-10 01:34:20,159 | INFO     | exitmsg: OK
[2026-01-09 20:34:55] 2026-01-10 01:34:20,159 | INFO     | cpuconsumptiontime: 58093 s
[2026-01-09 20:34:55] 2026-01-10 01:34:20,159 | INFO     | nevents: 400
[2026-01-09 20:34:55] 2026-01-10 01:34:20,159 | INFO     | neventsw: 0
[2026-01-09 20:34:55] 2026-01-10 01:34:20,159 | INFO     | pid: 233455
[2026-01-09 20:34:55] 2026-01-10 01:34:20,160 | INFO     | pgrp: 233455
[2026-01-09 20:34:55] 2026-01-10 01:34:20,160 | INFO     | corecount: 8
[2026-01-09 20:34:55] 2026-01-10 01:34:20,160 | INFO     | event service: False
[2026-01-09 20:34:55] 2026-01-10 01:34:20,160 | INFO     | sizes: {0: 2283800, 1: 2283999, 2: 2284027, 13: 2284027, 24: 2284083, 30: 2284373, 35: 2284529, 18224: 2316961, 18228: 2325959, 18230: 2326015, 18261: 2326209}
[2026-01-09 20:34:55] 2026-01-10 01:34:20,160 | INFO     | --------------------------------------------------
[2026-01-09 20:34:55] 2026-01-10 01:34:20,160 | INFO     | 
[2026-01-09 20:34:55] 2026-01-10 01:34:20,160 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-09 20:34:55] 2026-01-10 01:34:20,226 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 20:34:55] 2026-01-10 01:34:20,227 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 20:34:55] 2026-01-10 01:34:20,227 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 20:34:55] 2026-01-10 01:34:20,227 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 20:34:55] 2026-01-10 01:34:20,227 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 20:34:55] 2026-01-10 01:34:20,227 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 20:34:55] 2026-01-10 01:34:20,227 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 20:34:55] 2026-01-10 01:34:20,227 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 20:34:55] 2026-01-10 01:34:20,227 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 20:34:55] 2026-01-10 01:34:20,228 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 20:34:55] 2026-01-10 01:34:20,228 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 20:34:55] 2026-01-10 01:34:20,228 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 20:34:55] 2026-01-10 01:34:20,228 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 20:34:55] 2026-01-10 01:34:20,228 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 20:34:55] 2026-01-10 01:34:20,228 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 20:34:55] 2026-01-10 01:34:20,228 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 20:34:55] 2026-01-10 01:34:20,228 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 20:34:55] 2026-01-10 01:34:20,228 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 20:34:55] 2026-01-10 01:34:20,228 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 20:34:55] 2026-01-10 01:34:20,228 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 20:34:55] 2026-01-10 01:34:20,229 | INFO     | job 6963193626 has completed (purged errors)
[2026-01-09 20:34:55] 2026-01-10 01:34:20,229 | INFO     | overall cleanup function is called
[2026-01-09 20:34:55] 2026-01-10 01:34:21,245 | INFO     | --- collectZombieJob: --- 10, [233455]
[2026-01-09 20:34:55] 2026-01-10 01:34:21,246 | INFO     | zombie collector waiting for pid 233455
[2026-01-09 20:34:55] 2026-01-10 01:34:21,246 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 20:34:55] 2026-01-10 01:34:21,246 | INFO     | collected zombie processes
[2026-01-09 20:34:55] 2026-01-10 01:34:21,246 | INFO     | will attempt to kill all subprocesses of pid=233455
[2026-01-09 20:34:55] 2026-01-10 01:34:22,456 | INFO     | process IDs to be killed: [233455] (in reverse order)
[2026-01-09 20:34:55] 2026-01-10 01:34:23,269 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 20:34:55] 2026-01-10 01:34:23,269 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 20:34:55] 2026-01-10 01:34:23,317 | INFO     | did not find any defunct processes belonging to 233455
[2026-01-09 20:34:55] 2026-01-10 01:34:23,344 | INFO     | did not find any defunct processes belonging to 233455
[2026-01-09 20:34:55] 2026-01-10 01:34:23,344 | INFO     | ready for new job
[2026-01-09 20:34:55] 2026-01-10 01:34:23,348 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 20:34:55] 2026-01-10 01:34:23,351 | INFO     | ***************************************
[2026-01-09 20:34:55] 2026-01-10 01:34:23,351 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 20:34:55] 2026-01-10 01:34:23,351 | INFO     | ***************************************
[2026-01-09 20:34:55] 2026-01-10 01:34:23,351 | INFO     | 
[2026-01-09 20:34:55] 2026-01-10 01:34:23,365 | INFO     | architecture information:
[2026-01-09 20:34:55] 2026-01-10 01:34:23,365 | INFO     | executing command: cat /etc/os-release
[2026-01-09 20:34:55] 2026-01-10 01:34:23,519 | INFO     | cat /etc/os-release:
[2026-01-09 20:34:55] NAME="CentOS Linux"
[2026-01-09 20:34:55] VERSION="7 (Core)"
[2026-01-09 20:34:55] ID="centos"
[2026-01-09 20:34:55] ID_LIKE="rhel fedora"
[2026-01-09 20:34:55] VERSION_ID="7"
[2026-01-09 20:34:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 20:34:55] ANSI_COLOR="0;31"
[2026-01-09 20:34:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 20:34:55] HOME_URL="https://www.centos.org/"
[2026-01-09 20:34:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 20:34:55] 
[2026-01-09 20:34:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 20:34:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 20:34:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 20:34:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 20:34:55] 
[2026-01-09 20:34:55] 2026-01-10 01:34:23,519 | INFO     | ***************************************
[2026-01-09 20:34:55] 2026-01-10 01:34:24,039 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-09 20:34:55] 2026-01-10 01:34:24,124 | INFO     | sufficient remaining disk space (92708798464 B)
[2026-01-09 20:34:55] 2026-01-10 01:34:24,124 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 20:34:55] 2026-01-10 01:34:24,124 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 20:34:55] 2026-01-10 01:34:24,124 | INFO     | update_server=False
[2026-01-09 20:34:55] 2026-01-10 01:34:24,124 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 20:34:55] 2026-01-10 01:34:24,125 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 20:34:55] 2026-01-10 01:34:24,125 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:34:55] 2026-01-10 01:34:24,125 | INFO     | aborting loop
[2026-01-09 20:34:55] 2026-01-10 01:34:24,262 | INFO     | all job control threads have been joined
[2026-01-09 20:34:55] 2026-01-10 01:34:24,581 | INFO     | all data control threads have been joined
[2026-01-09 20:34:55] 2026-01-10 01:34:24,915 | INFO     | all payload control threads have been joined
[2026-01-09 20:34:55] 2026-01-10 01:34:25,129 | INFO     | [job] retrieve thread has finished
[2026-01-09 20:34:55] 2026-01-10 01:34:25,130 | INFO     | [job] job monitor thread has finished
[2026-01-09 20:34:55] 2026-01-10 01:34:25,183 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 20:34:55] 2026-01-10 01:34:25,184 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:34:55] 2026-01-10 01:34:25,270 | INFO     | [job] control thread has finished
[2026-01-09 20:34:55] 2026-01-10 01:34:25,587 | INFO     | [data] control thread has finished
[2026-01-09 20:34:55] 2026-01-10 01:34:25,736 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 20:34:55] 2026-01-10 01:34:25,916 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 20:34:55] 2026-01-10 01:34:25,921 | INFO     | [payload] control thread has finished
[2026-01-09 20:34:55] 2026-01-10 01:34:26,016 | INFO     | [payload] failed_post thread has finished
[2026-01-09 20:34:55] 2026-01-10 01:34:26,134 | INFO     | [data] copytool_out thread has finished
[2026-01-09 20:34:55] 2026-01-10 01:34:26,189 | INFO     | [job] queue monitor thread has finished
[2026-01-09 20:34:55] 2026-01-10 01:34:26,208 | INFO     | [payload] validate_post thread has finished
[2026-01-09 20:34:55] 2026-01-10 01:34:26,233 | INFO     | [job] validate thread has finished
[2026-01-09 20:34:55] 2026-01-10 01:34:26,300 | INFO     | [data] copytool_in thread has finished
[2026-01-09 20:34:55] 2026-01-10 01:34:26,302 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 20:34:55] 2026-01-10 01:34:26,303 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 20:34:55] 2026-01-10 01:34:26,675 | INFO     | [monitor] cgroup control has ended
[2026-01-09 20:34:55] 2026-01-10 01:34:30,313 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 20:34:55] 2026-01-10 01:34:31,186 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140679669888832)>', '<ExcThread(monitor, started 140678893922048)>']
[2026-01-09 20:34:55] 2026-01-10 01:34:36,212 | INFO     | all workflow threads have been joined
[2026-01-09 20:34:55] 2026-01-10 01:34:36,212 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 20:34:55] 2026-01-10 01:34:36,213 | INFO     | traces error code: 0
[2026-01-09 20:34:55] 2026-01-10 01:34:36,213 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 20:34:55] 2026-01-10 01:34:54,418 | INFO     | PID=222578 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 20:34:55] 2026-01-10 01:34:54,418 | INFO     | .. there are 17 such processes running
[2026-01-09 20:34:55] 2026-01-10 01:34:54,419 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 20:34:55] 2026-01-10 01:34:54,419 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 20:34:55] 2026-01-10 01:34:54,419 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 20:34:55] 2026-01-10 01:34:54,419 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 20:34:55] 2026-01-10 01:34:54,420 | CRITICAL | thread 'MainThread' is not alive
[2026-01-09 20:34:55] 2026-01-10 01:34:54,420 | INFO     | [monitor] control thread has ended
[2026-01-09 20:34:55] 2026-01-10 01:34:54,705 [wrapper] ==== pilot stdout END ====
[2026-01-09 20:34:55] 2026-01-10 01:34:54,720 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 20:34:55] 2026-01-10 01:34:54,735 [wrapper] pilotpid: 222578
[2026-01-09 20:34:55] 2026-01-10 01:34:54,750 [wrapper] Pilot exit status: 0
[2026-01-09 20:34:55] 2026-01-10 01:34:54,929 [wrapper] pandaids: 6963193626
[2026-01-09 20:34:55] 2026-01-10 01:34:55,257 [wrapper] cleanup supervisor_pilot 1018635 222579
[2026-01-09 20:34:55] 2026-01-10 01:34:55,274 [wrapper] Test setup, not cleaning
[2026-01-09 20:34:55] 2026-01-10 01:34:55,310 [wrapper] apfmon messages muted
[2026-01-09 20:34:55] 2026-01-10 01:34:55,325 [wrapper] ==== wrapper stdout END ====
[2026-01-09 20:34:55] 2026-01-10 01:34:55,356 [wrapper] ==== wrapper stderr END ====
[2026-01-09 20:34:55]  *** Error codes and diagnostics ***
[2026-01-09 20:34:55]     "exeErrorCode": 0,
[2026-01-09 20:34:55]     "exeErrorDiag": "",
[2026-01-09 20:34:55]     "pilotErrorCode": 0,
[2026-01-09 20:34:55]     "pilotErrorDiag": "",
[2026-01-09 20:34:55]  *** Listing of results directory ***
[2026-01-09 20:34:55] total 436420
[2026-01-09 20:34:55] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 20:34:55] -rwx------. 1 boincer umatlas     36322 Jan  8 23:23 runpilot2-wrapper.sh
[2026-01-09 20:34:55] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 23:24 queuedata.json
[2026-01-09 20:34:55] -rw-r--r--. 1 boincer umatlas       100 Jan  9 15:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 20:34:55] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 15:27 run_atlas
[2026-01-09 20:34:55] -rw-r--r--. 1 boincer umatlas       105 Jan  9 15:27 job.xml
[2026-01-09 20:34:55] -rw-r--r--. 2 boincer umatlas 223592325 Jan  9 15:27 EVNT.47898824._001502.pool.root.1
[2026-01-09 20:34:55] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 15:27 start_atlas.sh
[2026-01-09 20:34:55] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 15:27 shared
[2026-01-09 20:34:55] -rw-r--r--. 2 boincer umatlas    592398 Jan  9 15:27 input.tar.gz
[2026-01-09 20:34:55] -rw-r--r--. 1 boincer umatlas         0 Jan  9 15:27 boinc_lockfile
[2026-01-09 20:34:55] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 15:27 pandaJob.out
[2026-01-09 20:34:55] -rw-------. 1 boincer umatlas        57 Jan  9 15:27 setup.sh.local
[2026-01-09 20:34:55] -rw-------. 1 boincer umatlas    989381 Jan  9 15:28 agis_schedconf.cvmfs.json
[2026-01-09 20:34:55] drwx------. 5 boincer umatlas      4096 Jan  9 15:28 pilot3
[2026-01-09 20:34:55] -rw-r--r--. 1 boincer umatlas      6879 Jan  9 20:28 init_data.xml
[2026-01-09 20:34:55] -rw-------. 1 boincer umatlas 213652917 Jan  9 20:32 HITS.47898826._039099.pool.root.1
[2026-01-09 20:34:55] -rw-r--r--. 1 boincer umatlas       531 Jan  9 20:32 boinc_task_state.xml
[2026-01-09 20:34:55] -rw-------. 1 boincer umatlas      1040 Jan  9 20:33 memory_monitor_summary.json
[2026-01-09 20:34:55] -rw-------. 1 boincer umatlas   1516240 Jan  9 20:33 agis_ddmendpoints.agis.ALL.json
[2026-01-09 20:34:55] -rw-------. 1 boincer umatlas    520691 Jan  9 20:33 log.47898826._039099.job.log.tgz.1
[2026-01-09 20:34:55] -rw-------. 1 boincer umatlas      7830 Jan  9 20:34 heartbeat.json
[2026-01-09 20:34:55] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 20:34 boinc_mmap_file
[2026-01-09 20:34:55] -rw-r--r--. 1 boincer umatlas        28 Jan  9 20:34 wrapper_checkpoint.txt
[2026-01-09 20:34:55] -rw-------. 1 boincer umatlas        95 Jan  9 20:34 pilot_heartbeat.json
[2026-01-09 20:34:55] -rw-------. 1 boincer umatlas       892 Jan  9 20:34 pilotlog.txt
[2026-01-09 20:34:55] -rw-------. 1 boincer umatlas   2343001 Jan  9 20:34 log.47898826._039099.job.log.1
[2026-01-09 20:34:55] -rw-------. 1 boincer umatlas       357 Jan  9 20:34 output.list
[2026-01-09 20:34:55] -rw-r--r--. 1 boincer umatlas       620 Jan  9 20:34 runtime_log
[2026-01-09 20:34:55] -rw-------. 1 boincer umatlas   2887680 Jan  9 20:34 result.tar.gz
[2026-01-09 20:34:55] -rw-r--r--. 1 boincer umatlas      9353 Jan  9 20:34 runtime_log.err
[2026-01-09 20:34:55] -rw-------. 1 boincer umatlas       658 Jan  9 20:34 mShMDm4CJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmy0gKDmXBjy9m.diag
[2026-01-09 20:34:55] -rw-r--r--. 1 boincer umatlas     21471 Jan  9 20:34 stderr.txt
[2026-01-09 20:34:55] HITS file was successfully produced:
[2026-01-09 20:34:55] -rw-------. 1 boincer umatlas 213652917 Jan  9 20:32 shared/HITS.pool.root.1
[2026-01-09 20:34:55]  *** Contents of shared directory: ***
[2026-01-09 20:34:55] total 430424
[2026-01-09 20:34:55] -rw-r--r--. 2 boincer umatlas 223592325 Jan  9 15:27 ATLAS.root_0
[2026-01-09 20:34:55] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 15:27 start_atlas.sh
[2026-01-09 20:34:55] -rw-r--r--. 2 boincer umatlas    592398 Jan  9 15:27 input.tar.gz
[2026-01-09 20:34:55] -rw-------. 1 boincer umatlas 213652917 Jan  9 20:32 HITS.pool.root.1
[2026-01-09 20:34:55] -rw-------. 1 boincer umatlas   2887680 Jan  9 20:34 result.tar.gz
20:34:57 (216664): run_atlas exited; CPU time 58847.068718
20:34:57 (216664): called boinc_finish(0)

</stderr_txt>
]]>

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