Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:56:18 (1751841): wrapper (7.7.26015): starting
15:56:18 (1751841): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 15:56:18] Arguments: --nthreads 8
[2026-01-09 15:56:18] Threads: 8
[2026-01-09 15:56:18] Checking for CVMFS
[2026-01-09 15:56:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 15:56:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 15:56:19] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 15:56:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 15:56:20] 2.13.3.0 10787 23100 429264 154956 3 634 28728209 32935937 52709 16776704 0 242992634 99.799 110992137 27542 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 15:56:20] CVMFS is ok
[2026-01-09 15:56:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 15:56:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 15:56:20] Further information can be found at the LHC@home message board.
[2026-01-09 15:56:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 15:56:20] Checking for apptainer binary...
[2026-01-09 15:56:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 15:56:20] Running /usr/bin/apptainer --version
[2026-01-09 15:56:20] apptainer version 1.4.5-2.el9
[2026-01-09 15:56:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 15:56:21] lc-10-11.aglt2.org
[2026-01-09 15:56:21] apptainer works
[2026-01-09 15:56:21] Set ATHENA_PROC_NUMBER=8
[2026-01-09 15:56:21] Set ATHENA_CORE_NUMBER=8
[2026-01-09 15:56:21] Starting ATLAS job with PandaID=6963189253
[2026-01-09 15:56:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 22:09:28]  *** The last 200 lines of the pilot log: ***
[2026-01-09 22:09:28] 2026-01-10 03:08:36,648 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 22:09:28] 2026-01-10 03:08:38,719 | INFO     | PID=1771019 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 22:09:28] 2026-01-10 03:08:38,719 | INFO     | .. there are 82 such processes running
[2026-01-09 22:09:28] 2026-01-10 03:08:39,161 | INFO     | monitor loop #1104: job 0:6963189253 is in state 'finished'
[2026-01-09 22:09:28] 2026-01-10 03:08:39,163 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 22:09:28] 2026-01-10 03:08:39,720 | INFO     | time since job start (22259s) is within the limit (349056.0s)
[2026-01-09 22:09:28] 2026-01-10 03:08:41,654 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 22:09:28] 2026-01-10 03:08:41,697 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2822.207135416666
[2026-01-09 22:09:28] 2026-01-10 03:08:41,728 | INFO     | monitor loop #1105: job 0:6963189253 is in state 'finished'
[2026-01-09 22:09:28] 2026-01-10 03:08:41,729 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 22:09:28] 2026-01-10 03:08:41,753 | INFO     | time since job start (22261s) is within the limit (349056.0s)
[2026-01-09 22:09:28] 2026-01-10 03:08:41,788 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6963189253/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 22:09:28] 2026-01-10 03:08:41,825 | INFO     | extracted standard info from prmon json
[2026-01-09 22:09:28] 2026-01-10 03:08:41,825 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 22:09:28] 2026-01-10 03:08:41,825 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 22:09:28] 2026-01-10 03:08:41,826 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 22:09:28] 2026-01-10 03:08:41,826 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 22:09:28] 2026-01-10 03:08:41,842 | INFO     | fitting pss+swap vs Time
[2026-01-09 22:09:28] 2026-01-10 03:08:41,842 | INFO     | sum of square deviations: 14709249967.20725
[2026-01-09 22:09:28] 2026-01-10 03:08:41,867 | INFO     | sum of deviations: 126789673750.22098
[2026-01-09 22:09:28] 2026-01-10 03:08:41,868 | INFO     | mean x: 1768003438.660221
[2026-01-09 22:09:28] 2026-01-10 03:08:41,868 | INFO     | mean y: 2486152.2375690606
[2026-01-09 22:09:28] 2026-01-10 03:08:41,868 | INFO     | intersect: -15237215374.13189
[2026-01-09 22:09:28] 2026-01-10 03:08:41,868 | INFO     | chi2: 3.8294305988262956
[2026-01-09 22:09:28] 2026-01-10 03:08:41,869 | INFO     | sum of square deviations: 14108130804.577078
[2026-01-09 22:09:28] 2026-01-10 03:08:41,894 | INFO     | sum of deviations: 147024528843.6442
[2026-01-09 22:09:28] 2026-01-10 03:08:41,894 | INFO     | mean x: 1768003286.162465
[2026-01-09 22:09:28] 2026-01-10 03:08:41,894 | INFO     | mean y: 2491220.5406162464
[2026-01-09 22:09:28] 2026-01-10 03:08:41,894 | INFO     | intersect: -18422334416.723763
[2026-01-09 22:09:28] 2026-01-10 03:08:41,895 | INFO     | chi2: 3.1515522670983915
[2026-01-09 22:09:28] 2026-01-10 03:08:41,895 | INFO     | current chi2=3.1515522670983915 (change=17.701804856723893 %)
[2026-01-09 22:09:28] 2026-01-10 03:08:41,895 | INFO     | right removable region: 356
[2026-01-09 22:09:28] 2026-01-10 03:08:41,918 | INFO     | sum of square deviations: 14108095424.577078
[2026-01-09 22:09:28] 2026-01-10 03:08:41,921 | INFO     | sum of deviations: 29213079594.761963
[2026-01-09 22:09:28] 2026-01-10 03:08:41,921 | INFO     | mean x: 1768003591.162465
[2026-01-09 22:09:28] 2026-01-10 03:08:41,921 | INFO     | mean y: 2510858.9523809524
[2026-01-09 22:09:28] 2026-01-10 03:08:41,921 | INFO     | intersect: -3658424800.901392
[2026-01-09 22:09:28] 2026-01-10 03:08:41,946 | INFO     | chi2: 1.0847068691743023
[2026-01-09 22:09:28] 2026-01-10 03:08:41,946 | INFO     | current chi2=1.0847068691743023 (change=71.6744607016312 %)
[2026-01-09 22:09:28] 2026-01-10 03:08:41,946 | INFO     | sum of square deviations: 13523567742.769848
[2026-01-09 22:09:28] 2026-01-10 03:08:41,972 | INFO     | sum of deviations: 7265392762.426155
[2026-01-09 22:09:28] 2026-01-10 03:08:41,972 | INFO     | mean x: 1768003743.6619318
[2026-01-09 22:09:28] 2026-01-10 03:08:41,972 | INFO     | mean y: 2516565.2556818184
[2026-01-09 22:09:28] 2026-01-10 03:08:41,972 | INFO     | intersect: -947324619.2210435
[2026-01-09 22:09:28] 2026-01-10 03:08:41,973 | INFO     | chi2: 0.9335121718560369
[2026-01-09 22:09:28] 2026-01-10 03:08:41,973 | INFO     | current chi2=0.9335121718560369 (change=13.938760933021236 %)
[2026-01-09 22:09:28] 2026-01-10 03:08:41,973 | INFO     | left removable region: 20
[2026-01-09 22:09:28] 2026-01-10 03:08:41,973 | INFO     | sum of square deviations: 11761991623.321487
[2026-01-09 22:09:28] 2026-01-10 03:08:41,994 | INFO     | sum of deviations: 8764347856.625002
[2026-01-09 22:09:28] 2026-01-10 03:08:41,994 | INFO     | mean x: 1768003865.6607144
[2026-01-09 22:09:28] 2026-01-10 03:08:41,995 | INFO     | mean y: 2527777.9791666665
[2026-01-09 22:09:28] 2026-01-10 03:08:41,995 | INFO     | intersect: -1314885240.729686
[2026-01-09 22:09:28] 2026-01-10 03:08:41,995 | INFO     | chi2: 0.12220577089168348
[2026-01-09 22:09:28] 2026-01-10 03:08:41,995 | INFO     | current memory leak: 0.75 B/s (using 336 data points, chi2=0.12)
[2026-01-09 22:09:28] 2026-01-10 03:08:41,996 | INFO     | could have reported an average CPU frequency of 2820 MHz (16 samples)
[2026-01-09 22:09:28] 2026-01-10 03:08:41,996 | INFO     | ..............................
[2026-01-09 22:09:28] 2026-01-10 03:08:42,007 | INFO     | . Timing measurements:
[2026-01-09 22:09:28] 2026-01-10 03:08:42,007 | INFO     | . get job = 1 s
[2026-01-09 22:09:28] 2026-01-10 03:08:42,007 | INFO     | . initial setup = 7 s
[2026-01-09 22:09:28] 2026-01-10 03:08:42,007 | INFO     | . payload setup = 49 s
[2026-01-09 22:09:28] 2026-01-10 03:08:42,007 | INFO     | . stage-in = 0 s
[2026-01-09 22:09:28] 2026-01-10 03:08:42,007 | INFO     | . payload execution = 22085 s
[2026-01-09 22:09:28] 2026-01-10 03:08:42,007 | INFO     | . stage-out = 6 s
[2026-01-09 22:09:28] 2026-01-10 03:08:42,007 | INFO     | . log creation = 1 s
[2026-01-09 22:09:28] 2026-01-10 03:08:42,007 | INFO     | ..............................
[2026-01-09 22:09:28] 2026-01-10 03:08:43,045 | INFO     | 
[2026-01-09 22:09:28] 2026-01-10 03:08:43,046 | INFO     | job summary report
[2026-01-09 22:09:28] 2026-01-10 03:08:43,046 | INFO     | --------------------------------------------------
[2026-01-09 22:09:28] 2026-01-10 03:08:43,046 | INFO     | PanDA job id: 6963189253
[2026-01-09 22:09:28] 2026-01-10 03:08:43,046 | INFO     | task id: 47898826
[2026-01-09 22:09:28] 2026-01-10 03:08:43,046 | INFO     | errors: (none)
[2026-01-09 22:09:28] 2026-01-10 03:08:43,046 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 22:09:28] 2026-01-10 03:08:43,046 | INFO     | pilot state: finished 
[2026-01-09 22:09:28] 2026-01-10 03:08:43,046 | INFO     | transexitcode: 0
[2026-01-09 22:09:28] 2026-01-10 03:08:43,046 | INFO     | exeerrorcode: 0
[2026-01-09 22:09:28] 2026-01-10 03:08:43,046 | INFO     | exeerrordiag: 
[2026-01-09 22:09:28] 2026-01-10 03:08:43,046 | INFO     | exitcode: 0
[2026-01-09 22:09:28] 2026-01-10 03:08:43,046 | INFO     | exitmsg: OK
[2026-01-09 22:09:28] 2026-01-10 03:08:43,046 | INFO     | cpuconsumptiontime: 61095 s
[2026-01-09 22:09:28] 2026-01-10 03:08:43,047 | INFO     | nevents: 400
[2026-01-09 22:09:28] 2026-01-10 03:08:43,047 | INFO     | neventsw: 0
[2026-01-09 22:09:28] 2026-01-10 03:08:43,047 | INFO     | pid: 1816135
[2026-01-09 22:09:28] 2026-01-10 03:08:43,047 | INFO     | pgrp: 1816135
[2026-01-09 22:09:28] 2026-01-10 03:08:43,047 | INFO     | corecount: 8
[2026-01-09 22:09:28] 2026-01-10 03:08:43,047 | INFO     | event service: False
[2026-01-09 22:09:28] 2026-01-10 03:08:43,047 | INFO     | sizes: {0: 2283143, 1: 2283744, 2: 2283856, 3: 2284055, 15: 2284055, 26: 2284083, 38: 2284501, 49: 2284529, 22139: 2318301, 22140: 2318300, 22147: 2327690, 22178: 
[2026-01-09 22:09:28] 2026-01-10 03:08:43,047 | INFO     | --------------------------------------------------
[2026-01-09 22:09:28] 2026-01-10 03:08:43,047 | INFO     | 
[2026-01-09 22:09:28] 2026-01-10 03:08:43,047 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-01-09 22:09:28] 2026-01-10 03:08:43,164 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 22:09:28] 2026-01-10 03:08:43,164 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 22:09:28] 2026-01-10 03:08:43,164 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 22:09:28] 2026-01-10 03:08:43,164 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 22:09:28] 2026-01-10 03:08:43,164 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 22:09:28] 2026-01-10 03:08:43,164 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 22:09:28] 2026-01-10 03:08:43,164 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 22:09:28] 2026-01-10 03:08:43,164 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 22:09:28] 2026-01-10 03:08:43,164 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 22:09:28] 2026-01-10 03:08:43,164 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 22:09:28] 2026-01-10 03:08:43,165 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 22:09:28] 2026-01-10 03:08:43,165 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 22:09:28] 2026-01-10 03:08:43,165 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 22:09:28] 2026-01-10 03:08:43,165 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 22:09:28] 2026-01-10 03:08:43,165 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 22:09:28] 2026-01-10 03:08:43,165 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 22:09:28] 2026-01-10 03:08:43,165 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 22:09:28] 2026-01-10 03:08:43,165 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 22:09:28] 2026-01-10 03:08:43,165 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 22:09:28] 2026-01-10 03:08:43,165 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 22:09:28] 2026-01-10 03:08:43,165 | INFO     | job 6963189253 has completed (purged errors)
[2026-01-09 22:09:28] 2026-01-10 03:08:43,165 | INFO     | overall cleanup function is called
[2026-01-09 22:09:28] 2026-01-10 03:08:44,180 | INFO     | --- collectZombieJob: --- 10, [1816135]
[2026-01-09 22:09:28] 2026-01-10 03:08:44,181 | INFO     | zombie collector waiting for pid 1816135
[2026-01-09 22:09:28] 2026-01-10 03:08:44,181 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 22:09:28] 2026-01-10 03:08:44,181 | INFO     | collected zombie processes
[2026-01-09 22:09:28] 2026-01-10 03:08:44,181 | INFO     | will attempt to kill all subprocesses of pid=1816135
[2026-01-09 22:09:28] 2026-01-10 03:08:46,003 | INFO     | process IDs to be killed: [1816135] (in reverse order)
[2026-01-09 22:09:28] 2026-01-10 03:08:46,557 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 22:09:28] 2026-01-10 03:08:46,557 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 22:09:28] 2026-01-10 03:08:46,644 | INFO     | did not find any defunct processes belonging to 1816135
[2026-01-09 22:09:28] 2026-01-10 03:08:46,747 | INFO     | did not find any defunct processes belonging to 1816135
[2026-01-09 22:09:28] 2026-01-10 03:08:46,747 | INFO     | ready for new job
[2026-01-09 22:09:28] 2026-01-10 03:08:46,747 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 22:09:28] 2026-01-10 03:08:46,762 | INFO     | ***************************************
[2026-01-09 22:09:28] 2026-01-10 03:08:46,762 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 22:09:28] 2026-01-10 03:08:46,763 | INFO     | ***************************************
[2026-01-09 22:09:28] 2026-01-10 03:08:46,763 | INFO     | 
[2026-01-09 22:09:28] 2026-01-10 03:08:46,779 | INFO     | architecture information:
[2026-01-09 22:09:28] 2026-01-10 03:08:46,779 | INFO     | executing command: cat /etc/os-release
[2026-01-09 22:09:28] 2026-01-10 03:08:46,820 | INFO     | cat /etc/os-release:
[2026-01-09 22:09:28] NAME="CentOS Linux"
[2026-01-09 22:09:28] VERSION="7 (Core)"
[2026-01-09 22:09:28] ID="centos"
[2026-01-09 22:09:28] ID_LIKE="rhel fedora"
[2026-01-09 22:09:28] VERSION_ID="7"
[2026-01-09 22:09:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 22:09:28] ANSI_COLOR="0;31"
[2026-01-09 22:09:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 22:09:28] HOME_URL="https://www.centos.org/"
[2026-01-09 22:09:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 22:09:28] 
[2026-01-09 22:09:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 22:09:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 22:09:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 22:09:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 22:09:28] 
[2026-01-09 22:09:28] 2026-01-10 03:08:46,820 | INFO     | ***************************************
[2026-01-09 22:09:28] 2026-01-10 03:08:47,326 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-01-09 22:09:28] 2026-01-10 03:08:47,439 | INFO     | sufficient remaining disk space (95428804608 B)
[2026-01-09 22:09:28] 2026-01-10 03:08:47,439 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 22:09:28] 2026-01-10 03:08:47,439 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 22:09:28] 2026-01-10 03:08:47,439 | INFO     | update_server=False
[2026-01-09 22:09:28] 2026-01-10 03:08:47,439 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 22:09:28] 2026-01-10 03:08:47,440 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 22:09:28] 2026-01-10 03:08:47,628 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:09:28] 2026-01-10 03:08:47,794 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:09:28] 2026-01-10 03:08:47,795 | INFO     | aborting loop
[2026-01-09 22:09:28] 2026-01-10 03:08:47,922 | INFO     | all data control threads have been joined
[2026-01-09 22:09:28] 2026-01-10 03:08:48,248 | INFO     | all job control threads have been joined
[2026-01-09 22:09:28] 2026-01-10 03:08:48,445 | INFO     | [job] retrieve thread has finished
[2026-01-09 22:09:28] 2026-01-10 03:08:48,634 | INFO     | [job] queue monitor thread has finished
[2026-01-09 22:09:28] 2026-01-10 03:08:48,801 | INFO     | [job] job monitor thread has finished
[2026-01-09 22:09:28] 2026-01-10 03:08:48,818 | INFO     | all payload control threads have been joined
[2026-01-09 22:09:28] 2026-01-10 03:08:48,936 | INFO     | [data] control thread has finished
[2026-01-09 22:09:28] 2026-01-10 03:08:48,993 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 22:09:28] 2026-01-10 03:08:49,165 | INFO     | [payload] failed_post thread has finished
[2026-01-09 22:09:28] 2026-01-10 03:08:49,260 | INFO     | [job] control thread has finished
[2026-01-09 22:09:28] 2026-01-10 03:08:49,283 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 22:09:28] 2026-01-10 03:08:49,450 | INFO     | [data] copytool_out thread has finished
[2026-01-09 22:09:28] 2026-01-10 03:08:49,544 | INFO     | [payload] validate_post thread has finished
[2026-01-09 22:09:28] 2026-01-10 03:08:49,585 | INFO     | [data] copytool_in thread has finished
[2026-01-09 22:09:28] 2026-01-10 03:08:49,614 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 22:09:28] 2026-01-10 03:08:49,615 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 22:09:28] 2026-01-10 03:08:49,619 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 22:09:28] 2026-01-10 03:08:49,620 | INFO     | [job] validate thread has finished
[2026-01-09 22:09:28] 2026-01-10 03:08:49,824 | INFO     | [payload] control thread has finished
[2026-01-09 22:09:28] 2026-01-10 03:08:53,311 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 22:09:28] 2026-01-10 03:09:18,757 | INFO     | PID=1771019 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 22:09:28] 2026-01-10 03:09:18,758 | INFO     | .. there are 82 such processes running
[2026-01-09 22:09:28] 2026-01-10 03:09:18,769 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 22:09:28] 2026-01-10 03:09:18,769 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 22:09:28] 2026-01-10 03:09:18,769 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 22:09:28] 2026-01-10 03:09:20,341 | INFO     | [monitor] cgroup control has ended
[2026-01-09 22:09:28] 2026-01-10 03:09:21,164 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140031129839424)>', '<ExcThread(monitor, started 140030739728128)>']
[2026-01-09 22:09:28] 2026-01-10 03:09:21,790 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 22:09:28] 2026-01-10 03:09:21,791 | INFO     | [monitor] control thread has ended
[2026-01-09 22:09:28] 2026-01-10 03:09:26,190 | INFO     | all workflow threads have been joined
[2026-01-09 22:09:28] 2026-01-10 03:09:26,191 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 22:09:28] 2026-01-10 03:09:26,191 | INFO     | traces error code: 0
[2026-01-09 22:09:28] 2026-01-10 03:09:26,191 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 22:09:28] 2026-01-10 03:09:26,504 [wrapper] ==== pilot stdout END ====
[2026-01-09 22:09:28] 2026-01-10 03:09:26,527 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 22:09:28] 2026-01-10 03:09:26,585 [wrapper] pilotpid: 1771019
[2026-01-09 22:09:28] 2026-01-10 03:09:26,621 [wrapper] Pilot exit status: 0
[2026-01-09 22:09:28] 2026-01-10 03:09:26,722 [wrapper] pandaids: 6963189253
[2026-01-09 22:09:28] 2026-01-10 03:09:27,817 [wrapper] cleanup supervisor_pilot 1507710 1771020
[2026-01-09 22:09:28] 2026-01-10 03:09:27,834 [wrapper] Test setup, not cleaning
[2026-01-09 22:09:28] 2026-01-10 03:09:27,866 [wrapper] apfmon messages muted
[2026-01-09 22:09:28] 2026-01-10 03:09:27,892 [wrapper] ==== wrapper stdout END ====
[2026-01-09 22:09:28] 2026-01-10 03:09:27,924 [wrapper] ==== wrapper stderr END ====
[2026-01-09 22:09:28]  *** Error codes and diagnostics ***
[2026-01-09 22:09:28]     "exeErrorCode": 0,
[2026-01-09 22:09:28]     "exeErrorDiag": "",
[2026-01-09 22:09:28]     "pilotErrorCode": 0,
[2026-01-09 22:09:28]     "pilotErrorDiag": "",
[2026-01-09 22:09:28]  *** Listing of results directory ***
[2026-01-09 22:09:28] total 447524
[2026-01-09 22:09:28] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 23:21 queuedata.json
[2026-01-09 22:09:28] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 22:09:28] -rwx------. 1 boincer umatlas     36322 Jan  8 23:22 runpilot2-wrapper.sh
[2026-01-09 22:09:28] -rw-r--r--. 1 boincer umatlas       100 Jan  9 15:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 22:09:28] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 15:56 run_atlas
[2026-01-09 22:09:28] -rw-r--r--. 1 boincer umatlas       105 Jan  9 15:56 job.xml
[2026-01-09 22:09:28] -rw-r--r--. 2 boincer umatlas 222234258 Jan  9 15:56 EVNT.47898824._001464.pool.root.1
[2026-01-09 22:09:28] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 15:56 shared
[2026-01-09 22:09:28] -rw-r--r--. 2 boincer umatlas    592396 Jan  9 15:56 input.tar.gz
[2026-01-09 22:09:28] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 15:56 start_atlas.sh
[2026-01-09 22:09:28] -rw-r--r--. 1 boincer umatlas         0 Jan  9 15:56 boinc_lockfile
[2026-01-09 22:09:28] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 15:56 pandaJob.out
[2026-01-09 22:09:28] -rw-------. 1 boincer umatlas        57 Jan  9 15:56 setup.sh.local
[2026-01-09 22:09:28] -rw-------. 1 boincer umatlas    989381 Jan  9 15:57 agis_schedconf.cvmfs.json
[2026-01-09 22:09:28] drwx------. 5 boincer umatlas      4096 Jan  9 15:57 pilot3
[2026-01-09 22:09:28] -rw-r--r--. 1 boincer umatlas      6866 Jan  9 22:01 init_data.xml
[2026-01-09 22:09:28] -rw-------. 1 boincer umatlas 226146407 Jan  9 22:06 HITS.47898826._038135.pool.root.1
[2026-01-09 22:09:28] -rw-r--r--. 1 boincer umatlas       531 Jan  9 22:07 boinc_task_state.xml
[2026-01-09 22:09:28] -rw-------. 1 boincer umatlas      1047 Jan  9 22:07 memory_monitor_summary.json
[2026-01-09 22:09:28] -rw-------. 1 boincer umatlas   1516240 Jan  9 22:08 agis_ddmendpoints.agis.ALL.json
[2026-01-09 22:09:28] -rw-------. 1 boincer umatlas    526453 Jan  9 22:08 log.47898826._038135.job.log.tgz.1
[2026-01-09 22:09:28] -rw-------. 1 boincer umatlas      7833 Jan  9 22:08 heartbeat.json
[2026-01-09 22:09:28] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 22:08 boinc_mmap_file
[2026-01-09 22:09:28] -rw-r--r--. 1 boincer umatlas        28 Jan  9 22:08 wrapper_checkpoint.txt
[2026-01-09 22:09:28] -rw-------. 1 boincer umatlas        95 Jan  9 22:09 pilot_heartbeat.json
[2026-01-09 22:09:28] -rw-------. 1 boincer umatlas      4824 Jan  9 22:09 pilotlog.txt
[2026-01-09 22:09:28] -rw-------. 1 boincer umatlas   2454477 Jan  9 22:09 log.47898826._038135.job.log.1
[2026-01-09 22:09:28] -rw-------. 1 boincer umatlas       357 Jan  9 22:09 output.list
[2026-01-09 22:09:28] -rw-r--r--. 1 boincer umatlas       620 Jan  9 22:09 runtime_log
[2026-01-09 22:09:28] -rw-------. 1 boincer umatlas   3000320 Jan  9 22:09 result.tar.gz
[2026-01-09 22:09:28] -rw-r--r--. 1 boincer umatlas      9343 Jan  9 22:09 runtime_log.err
[2026-01-09 22:09:28] -rw-------. 1 boincer umatlas       658 Jan  9 22:09 GCjMDmECJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm78lKDmUlNhyn.diag
[2026-01-09 22:09:28] -rw-r--r--. 1 boincer umatlas     21544 Jan  9 22:09 stderr.txt
[2026-01-09 22:09:28] HITS file was successfully produced:
[2026-01-09 22:09:28] -rw-------. 1 boincer umatlas 226146407 Jan  9 22:06 shared/HITS.pool.root.1
[2026-01-09 22:09:28]  *** Contents of shared directory: ***
[2026-01-09 22:09:28] total 441412
[2026-01-09 22:09:28] -rw-r--r--. 2 boincer umatlas 222234258 Jan  9 15:56 ATLAS.root_0
[2026-01-09 22:09:28] -rw-r--r--. 2 boincer umatlas    592396 Jan  9 15:56 input.tar.gz
[2026-01-09 22:09:28] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 15:56 start_atlas.sh
[2026-01-09 22:09:28] -rw-------. 1 boincer umatlas 226146407 Jan  9 22:06 HITS.pool.root.1
[2026-01-09 22:09:28] -rw-------. 1 boincer umatlas   3000320 Jan  9 22:09 result.tar.gz
22:09:29 (1751841): run_atlas exited; CPU time 62478.585935
22:09:29 (1751841): called boinc_finish(0)

</stderr_txt>
]]>

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