Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:56:10 (3093387): wrapper (7.7.26015): starting
16:56:10 (3093387): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 16:56:10] Arguments: --nthreads 9
[2026-01-09 16:56:10] Threads: 9
[2026-01-09 16:56:10] Checking for CVMFS
[2026-01-09 16:56:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 16:56:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 16:56:10] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 16:56:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 16:56:10] 2.13.3.0 11772 93932 226516 154957 3 258 17332526 32935936 20476 16776704 0 503735765 99.507 664234663 36865 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 16:56:10] CVMFS is ok
[2026-01-09 16:56:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 16:56:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 16:56:10] Further information can be found at the LHC@home message board.
[2026-01-09 16:56:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 16:56:10] Checking for apptainer binary...
[2026-01-09 16:56:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 16:56:10] Running /usr/bin/apptainer --version
[2026-01-09 16:56:10] apptainer version 1.4.5-2.el9
[2026-01-09 16:56:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 16:56:11] c7-3-28.aglt2.org
[2026-01-09 16:56:11] apptainer works
[2026-01-09 16:56:11] Set ATHENA_PROC_NUMBER=9
[2026-01-09 16:56:11] Set ATHENA_CORE_NUMBER=9
[2026-01-09 16:56:31] Starting ATLAS job with PandaID=6963190207
[2026-01-09 16:56:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:40:08 (3093387): BOINC client no longer exists - exiting
21:40:08 (3093387): timer handler: client dead, exiting
21:40:44 (735574): wrapper (7.7.26015): starting
21:40:44 (735574): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 21:40:44] Arguments: --nthreads 8
[2026-01-09 21:40:44] Threads: 8
[2026-01-09 21:40:44] This job has been restarted, cleaning up previous attempt
[2026-01-09 21:40:44] Checking for CVMFS
[2026-01-09 21:40:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 21:40:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 21:40:44] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 21:40:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 21:40:45] 2.13.3.0 11772 94217 231020 154964 3 152 23691059 32935937 18060 16776704 0 504884444 99.508 664692656 36866 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 21:40:45] CVMFS is ok
[2026-01-09 21:40:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 21:40:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 21:40:45] Further information can be found at the LHC@home message board.
[2026-01-09 21:40:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 21:40:45] Checking for apptainer binary...
[2026-01-09 21:40:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 21:40:45] Running /usr/bin/apptainer --version
[2026-01-09 21:40:45] apptainer version 1.4.5-2.el9
[2026-01-09 21:40:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 21:40:45] c7-3-28.aglt2.org
[2026-01-09 21:40:45] apptainer works
[2026-01-09 21:40:45] Set ATHENA_PROC_NUMBER=8
[2026-01-09 21:40:45] Set ATHENA_CORE_NUMBER=8
[2026-01-09 21:40:45] Starting ATLAS job with PandaID=6963190207
[2026-01-09 21:40:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 02:50:48]  *** The last 200 lines of the pilot log: ***
[2026-01-10 02:50:48] 2026-01-10 07:50:14,184 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 02:50:48] 2026-01-10 07:50:14,190 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3109.0053333333326
[2026-01-10 02:50:48] 2026-01-10 07:50:14,205 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963190207/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 02:50:48] 2026-01-10 07:50:14,206 | INFO     | extracted standard info from prmon json
[2026-01-10 02:50:48] 2026-01-10 07:50:14,206 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 02:50:48] 2026-01-10 07:50:14,206 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 02:50:48] 2026-01-10 07:50:14,206 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 02:50:48] 2026-01-10 07:50:14,206 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 02:50:48] 2026-01-10 07:50:14,211 | INFO     | fitting pss+swap vs Time
[2026-01-10 02:50:48] 2026-01-10 07:50:14,211 | INFO     | sum of square deviations: 8711492243.671041
[2026-01-10 02:50:48] 2026-01-10 07:50:14,213 | INFO     | sum of deviations: 38968403324.1579
[2026-01-10 02:50:48] 2026-01-10 07:50:14,214 | INFO     | mean x: 1768022130.5328948
[2026-01-10 02:50:48] 2026-01-10 07:50:14,214 | INFO     | mean y: 2474965.1842105263
[2026-01-10 02:50:48] 2026-01-10 07:50:14,214 | INFO     | intersect: -7906273334.361936
[2026-01-10 02:50:48] 2026-01-10 07:50:14,214 | INFO     | chi2: 2.1872436767501715
[2026-01-10 02:50:48] 2026-01-10 07:50:14,214 | INFO     | sum of square deviations: 8288678063.66558
[2026-01-10 02:50:48] 2026-01-10 07:50:14,217 | INFO     | sum of deviations: 56260364000.00337
[2026-01-10 02:50:48] 2026-01-10 07:50:14,217 | INFO     | mean x: 1768021978.033445
[2026-01-10 02:50:48] 2026-01-10 07:50:14,217 | INFO     | mean y: 2481112.8996655517
[2026-01-10 02:50:48] 2026-01-10 07:50:14,217 | INFO     | intersect: -11998173186.87395
[2026-01-10 02:50:48] 2026-01-10 07:50:14,217 | INFO     | chi2: 1.5011862786505454
[2026-01-10 02:50:48] 2026-01-10 07:50:14,217 | INFO     | current chi2=1.5011862786505454 (change=31.366299301364403 %)
[2026-01-10 02:50:48] 2026-01-10 07:50:14,218 | INFO     | sum of square deviations: 7879771121.159876
[2026-01-10 02:50:48] 2026-01-10 07:50:14,220 | INFO     | sum of deviations: 55138633022.76192
[2026-01-10 02:50:48] 2026-01-10 07:50:14,220 | INFO     | mean x: 1768021825.5340135
[2026-01-10 02:50:48] 2026-01-10 07:50:14,220 | INFO     | mean y: 2480694.523809524
[2026-01-10 02:50:48] 2026-01-10 07:50:14,220 | INFO     | intersect: -12369237356.089304
[2026-01-10 02:50:48] 2026-01-10 07:50:14,221 | INFO     | chi2: 1.5014909890066428
[2026-01-10 02:50:48] 2026-01-10 07:50:14,221 | INFO     | current chi2=1.5014909890066428 (change=-0.020297971040027857 %)
[2026-01-10 02:50:48] 2026-01-10 07:50:14,221 | INFO     | right removable region: 293
[2026-01-10 02:50:48] 2026-01-10 07:50:14,221 | INFO     | sum of square deviations: 8288671963.66558
[2026-01-10 02:50:48] 2026-01-10 07:50:14,223 | INFO     | sum of deviations: -9602580755.277592
[2026-01-10 02:50:48] 2026-01-10 07:50:14,224 | INFO     | mean x: 1768022283.033445
[2026-01-10 02:50:48] 2026-01-10 07:50:14,224 | INFO     | mean y: 2492366.3277591974
[2026-01-10 02:50:48] 2026-01-10 07:50:14,224 | INFO     | intersect: 2050779091.1954124
[2026-01-10 02:50:48] 2026-01-10 07:50:14,224 | INFO     | chi2: 0.7466614315206704
[2026-01-10 02:50:48] 2026-01-10 07:50:14,224 | INFO     | current chi2=0.7466614315206704 (change=65.86290592779002 %)
[2026-01-10 02:50:48] 2026-01-10 07:50:14,225 | INFO     | sum of square deviations: 7879758921.159876
[2026-01-10 02:50:48] 2026-01-10 07:50:14,227 | INFO     | sum of deviations: -16736860439.180271
[2026-01-10 02:50:48] 2026-01-10 07:50:14,227 | INFO     | mean x: 1768022435.5340135
[2026-01-10 02:50:48] 2026-01-10 07:50:14,227 | INFO     | mean y: 2495008.568027211
[2026-01-10 02:50:48] 2026-01-10 07:50:14,227 | INFO     | intersect: 3757831314.277829
[2026-01-10 02:50:48] 2026-01-10 07:50:14,227 | INFO     | chi2: 0.7122141454104585
[2026-01-10 02:50:48] 2026-01-10 07:50:14,228 | INFO     | current chi2=0.7122141454104585 (change=4.613508165281247 %)
[2026-01-10 02:50:48] 2026-01-10 07:50:14,228 | INFO     | left removable region: 20
[2026-01-10 02:50:48] 2026-01-10 07:50:14,228 | INFO     | sum of square deviations: 6308956125.633713
[2026-01-10 02:50:48] 2026-01-10 07:50:14,230 | INFO     | sum of deviations: 3352231270.8461533
[2026-01-10 02:50:48] 2026-01-10 07:50:14,230 | INFO     | mean x: 1768022405.0366302
[2026-01-10 02:50:48] 2026-01-10 07:50:14,230 | INFO     | mean y: 2500487.6153846155
[2026-01-10 02:50:48] 2026-01-10 07:50:14,230 | INFO     | intersect: -936929090.8594676
[2026-01-10 02:50:48] 2026-01-10 07:50:14,231 | INFO     | chi2: 0.012254192764978489
[2026-01-10 02:50:48] 2026-01-10 07:50:14,231 | INFO     | current memory leak: 0.53 B/s (using 273 data points, chi2=0.01)
[2026-01-10 02:50:48] 2026-01-10 07:50:14,231 | INFO     | could have reported an average CPU frequency of 3189 MHz (14 samples)
[2026-01-10 02:50:48] 2026-01-10 07:50:14,231 | INFO     | ..............................
[2026-01-10 02:50:48] 2026-01-10 07:50:14,231 | INFO     | . Timing measurements:
[2026-01-10 02:50:48] 2026-01-10 07:50:14,231 | INFO     | . get job = 0 s
[2026-01-10 02:50:48] 2026-01-10 07:50:14,232 | INFO     | . initial setup = 2 s
[2026-01-10 02:50:48] 2026-01-10 07:50:14,232 | INFO     | . payload setup = 7 s
[2026-01-10 02:50:48] 2026-01-10 07:50:14,232 | INFO     | . stage-in = 0 s
[2026-01-10 02:50:48] 2026-01-10 07:50:14,232 | INFO     | . payload execution = 18510 s
[2026-01-10 02:50:48] 2026-01-10 07:50:14,232 | INFO     | . stage-out = 2 s
[2026-01-10 02:50:48] 2026-01-10 07:50:14,232 | INFO     | . log creation = 0 s
[2026-01-10 02:50:48] 2026-01-10 07:50:14,232 | INFO     | ..............................
[2026-01-10 02:50:48] 2026-01-10 07:50:14,240 | INFO     | time since job start (18557s) is within the limit (349056.0s)
[2026-01-10 02:50:48] 2026-01-10 07:50:14,620 | INFO     | 
[2026-01-10 02:50:48] 2026-01-10 07:50:14,620 | INFO     | job summary report
[2026-01-10 02:50:48] 2026-01-10 07:50:14,620 | INFO     | --------------------------------------------------
[2026-01-10 02:50:48] 2026-01-10 07:50:14,620 | INFO     | PanDA job id: 6963190207
[2026-01-10 02:50:48] 2026-01-10 07:50:14,620 | INFO     | task id: 47898826
[2026-01-10 02:50:48] 2026-01-10 07:50:14,620 | INFO     | errors: (none)
[2026-01-10 02:50:48] 2026-01-10 07:50:14,620 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 02:50:48] 2026-01-10 07:50:14,620 | INFO     | pilot state: finished 
[2026-01-10 02:50:48] 2026-01-10 07:50:14,621 | INFO     | transexitcode: 0
[2026-01-10 02:50:48] 2026-01-10 07:50:14,621 | INFO     | exeerrorcode: 0
[2026-01-10 02:50:48] 2026-01-10 07:50:14,621 | INFO     | exeerrordiag: 
[2026-01-10 02:50:48] 2026-01-10 07:50:14,621 | INFO     | exitcode: 0
[2026-01-10 02:50:48] 2026-01-10 07:50:14,621 | INFO     | exitmsg: OK
[2026-01-10 02:50:48] 2026-01-10 07:50:14,621 | INFO     | cpuconsumptiontime: 41581 s
[2026-01-10 02:50:48] 2026-01-10 07:50:14,621 | INFO     | nevents: 400
[2026-01-10 02:50:48] 2026-01-10 07:50:14,621 | INFO     | neventsw: 0
[2026-01-10 02:50:48] 2026-01-10 07:50:14,621 | INFO     | pid: 788016
[2026-01-10 02:50:48] 2026-01-10 07:50:14,621 | INFO     | pgrp: 788016
[2026-01-10 02:50:48] 2026-01-10 07:50:14,621 | INFO     | corecount: 8
[2026-01-10 02:50:48] 2026-01-10 07:50:14,621 | INFO     | event service: False
[2026-01-10 02:50:48] 2026-01-10 07:50:14,621 | INFO     | sizes: {0: 2283971, 1: 2283999, 6: 2284261, 11: 2284289, 18520: 2316891, 18521: 2316890, 18525: 2326072, 18528: 2326128, 18539: 2326322}
[2026-01-10 02:50:48] 2026-01-10 07:50:14,622 | INFO     | --------------------------------------------------
[2026-01-10 02:50:48] 2026-01-10 07:50:14,622 | INFO     | 
[2026-01-10 02:50:48] 2026-01-10 07:50:14,622 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 02:50:48] 2026-01-10 07:50:14,749 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 02:50:48] 2026-01-10 07:50:14,749 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 02:50:48] 2026-01-10 07:50:14,749 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 02:50:48] 2026-01-10 07:50:14,749 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 02:50:48] 2026-01-10 07:50:14,749 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 02:50:48] 2026-01-10 07:50:14,749 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 02:50:48] 2026-01-10 07:50:14,749 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 02:50:48] 2026-01-10 07:50:14,749 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 02:50:48] 2026-01-10 07:50:14,749 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 02:50:48] 2026-01-10 07:50:14,749 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 02:50:48] 2026-01-10 07:50:14,749 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 02:50:48] 2026-01-10 07:50:14,750 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 02:50:48] 2026-01-10 07:50:14,750 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 02:50:48] 2026-01-10 07:50:14,750 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 02:50:48] 2026-01-10 07:50:14,750 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 02:50:48] 2026-01-10 07:50:14,750 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 02:50:48] 2026-01-10 07:50:14,750 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 02:50:48] 2026-01-10 07:50:14,750 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 02:50:48] 2026-01-10 07:50:14,750 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 02:50:48] 2026-01-10 07:50:14,750 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 02:50:48] 2026-01-10 07:50:14,750 | INFO     | job 6963190207 has completed (purged errors)
[2026-01-10 02:50:48] 2026-01-10 07:50:14,750 | INFO     | overall cleanup function is called
[2026-01-10 02:50:48] 2026-01-10 07:50:15,759 | INFO     | --- collectZombieJob: --- 10, [788016]
[2026-01-10 02:50:48] 2026-01-10 07:50:15,759 | INFO     | zombie collector waiting for pid 788016
[2026-01-10 02:50:48] 2026-01-10 07:50:15,759 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 02:50:48] 2026-01-10 07:50:15,759 | INFO     | collected zombie processes
[2026-01-10 02:50:48] 2026-01-10 07:50:15,759 | INFO     | will attempt to kill all subprocesses of pid=788016
[2026-01-10 02:50:48] 2026-01-10 07:50:16,254 | INFO     | process IDs to be killed: [788016] (in reverse order)
[2026-01-10 02:50:48] 2026-01-10 07:50:16,405 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 02:50:48] 2026-01-10 07:50:16,405 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 02:50:48] 2026-01-10 07:50:16,431 | INFO     | did not find any defunct processes belonging to 788016
[2026-01-10 02:50:48] 2026-01-10 07:50:16,454 | INFO     | did not find any defunct processes belonging to 788016
[2026-01-10 02:50:48] 2026-01-10 07:50:16,454 | INFO     | ready for new job
[2026-01-10 02:50:48] 2026-01-10 07:50:16,454 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 02:50:48] 2026-01-10 07:50:16,459 | INFO     | ***************************************
[2026-01-10 02:50:48] 2026-01-10 07:50:16,459 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 02:50:48] 2026-01-10 07:50:16,459 | INFO     | ***************************************
[2026-01-10 02:50:48] 2026-01-10 07:50:16,459 | INFO     | 
[2026-01-10 02:50:48] 2026-01-10 07:50:16,466 | INFO     | architecture information:
[2026-01-10 02:50:48] 2026-01-10 07:50:16,466 | INFO     | executing command: cat /etc/os-release
[2026-01-10 02:50:48] 2026-01-10 07:50:16,540 | INFO     | cat /etc/os-release:
[2026-01-10 02:50:48] NAME="CentOS Linux"
[2026-01-10 02:50:48] VERSION="7 (Core)"
[2026-01-10 02:50:48] ID="centos"
[2026-01-10 02:50:48] ID_LIKE="rhel fedora"
[2026-01-10 02:50:48] VERSION_ID="7"
[2026-01-10 02:50:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 02:50:48] ANSI_COLOR="0;31"
[2026-01-10 02:50:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 02:50:48] HOME_URL="https://www.centos.org/"
[2026-01-10 02:50:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 02:50:48] 
[2026-01-10 02:50:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 02:50:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 02:50:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 02:50:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 02:50:48] 
[2026-01-10 02:50:48] 2026-01-10 07:50:16,540 | INFO     | ***************************************
[2026-01-10 02:50:48] 2026-01-10 07:50:17,044 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 02:50:48] 2026-01-10 07:50:17,064 | INFO     | sufficient remaining disk space (74510761984 B)
[2026-01-10 02:50:48] 2026-01-10 07:50:17,064 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 02:50:48] 2026-01-10 07:50:17,064 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 02:50:48] 2026-01-10 07:50:17,064 | INFO     | update_server=False
[2026-01-10 02:50:48] 2026-01-10 07:50:17,064 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 02:50:48] 2026-01-10 07:50:17,064 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 02:50:48] 2026-01-10 07:50:17,065 | INFO     | aborting loop
[2026-01-10 02:50:48] 2026-01-10 07:50:17,086 | INFO     | all data control threads have been joined
[2026-01-10 02:50:48] 2026-01-10 07:50:17,811 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 02:50:48] 2026-01-10 07:50:17,898 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 02:50:48] 2026-01-10 07:50:17,931 | INFO     | all payload control threads have been joined
[2026-01-10 02:50:48] 2026-01-10 07:50:18,069 | INFO     | [job] retrieve thread has finished
[2026-01-10 02:50:48] 2026-01-10 07:50:18,070 | INFO     | [job] job monitor thread has finished
[2026-01-10 02:50:48] 2026-01-10 07:50:18,095 | INFO     | [data] control thread has finished
[2026-01-10 02:50:48] 2026-01-10 07:50:18,098 | INFO     | all job control threads have been joined
[2026-01-10 02:50:48] 2026-01-10 07:50:18,298 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 02:50:48] 2026-01-10 07:50:18,302 | INFO     | [data] copytool_in thread has finished
[2026-01-10 02:50:48] 2026-01-10 07:50:18,547 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 02:50:48] 2026-01-10 07:50:18,906 | INFO     | [payload] failed_post thread has finished
[2026-01-10 02:50:48] 2026-01-10 07:50:18,937 | INFO     | [payload] control thread has finished
[2026-01-10 02:50:48] 2026-01-10 07:50:19,004 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 02:50:48] 2026-01-10 07:50:19,104 | INFO     | [job] control thread has finished
[2026-01-10 02:50:48] 2026-01-10 07:50:19,128 | INFO     | [job] validate thread has finished
[2026-01-10 02:50:48] 2026-01-10 07:50:19,135 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 02:50:48] 2026-01-10 07:50:19,345 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 02:50:48] 2026-01-10 07:50:19,590 | INFO     | [payload] validate_post thread has finished
[2026-01-10 02:50:48] 2026-01-10 07:50:19,905 | INFO     | [data] copytool_out thread has finished
[2026-01-10 02:50:48] 2026-01-10 07:50:20,361 | INFO     | [job] queue monitor thread has finished
[2026-01-10 02:50:48] 2026-01-10 07:50:21,826 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 02:50:48] 2026-01-10 07:50:29,764 | INFO     | [monitor] cgroup control has ended
[2026-01-10 02:50:48] 2026-01-10 07:50:31,793 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140223667414848)>', '<ExcThread(monitor, started 140222813689600)>']
[2026-01-10 02:50:48] 2026-01-10 07:50:36,820 | INFO     | all workflow threads have been joined
[2026-01-10 02:50:48] 2026-01-10 07:50:36,820 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 02:50:48] 2026-01-10 07:50:36,820 | INFO     | traces error code: 0
[2026-01-10 02:50:48] 2026-01-10 07:50:36,820 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 02:50:48] 2026-01-10 07:50:47,912 | INFO     | PID=754483 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 02:50:48] 2026-01-10 07:50:47,914 | INFO     | .. there are 25 such processes running
[2026-01-10 02:50:48] 2026-01-10 07:50:47,914 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 02:50:48] 2026-01-10 07:50:47,914 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 02:50:48] 2026-01-10 07:50:47,914 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 02:50:48] 2026-01-10 07:50:47,915 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 02:50:48] 2026-01-10 07:50:47,915 | CRITICAL | thread 'MainThread' is not alive
[2026-01-10 02:50:48] 2026-01-10 07:50:47,915 | INFO     | [monitor] control thread has ended
[2026-01-10 02:50:48] 2026-01-10 07:50:48,013 [wrapper] ==== pilot stdout END ====
[2026-01-10 02:50:48] 2026-01-10 07:50:48,015 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 02:50:48] 2026-01-10 07:50:48,018 [wrapper] pilotpid: 754483
[2026-01-10 02:50:48] 2026-01-10 07:50:48,020 [wrapper] Pilot exit status: 0
[2026-01-10 02:50:48] 2026-01-10 07:50:48,096 [wrapper] pandaids: 6963190207 6963190207
[2026-01-10 02:50:48] 2026-01-10 07:50:48,300 [wrapper] cleanup supervisor_pilot 2423425 754484
[2026-01-10 02:50:48] 2026-01-10 07:50:48,356 [wrapper] Test setup, not cleaning
[2026-01-10 02:50:48] 2026-01-10 07:50:48,383 [wrapper] apfmon messages muted
[2026-01-10 02:50:48] 2026-01-10 07:50:48,435 [wrapper] ==== wrapper stdout END ====
[2026-01-10 02:50:48] 2026-01-10 07:50:48,448 [wrapper] ==== wrapper stderr END ====
[2026-01-10 02:50:48]  *** Error codes and diagnostics ***
[2026-01-10 02:50:48]     "exeErrorCode": 0,
[2026-01-10 02:50:48]     "exeErrorDiag": "",
[2026-01-10 02:50:48]     "pilotErrorCode": 0,
[2026-01-10 02:50:48]     "pilotErrorDiag": "",
[2026-01-10 02:50:48]  *** Listing of results directory ***
[2026-01-10 02:50:48] total 663024
[2026-01-10 02:50:48] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-10 02:50:48] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-10 02:50:48] -rwx------. 1 boincer umatlas     36322 Jan  8 23:23 runpilot2-wrapper.sh
[2026-01-10 02:50:48] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 23:24 queuedata.json
[2026-01-10 02:50:48] -rw-r--r--. 1 boincer umatlas       100 Jan  9 16:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 02:50:48] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 16:56 run_atlas
[2026-01-10 02:50:48] -rw-r--r--. 1 boincer umatlas       105 Jan  9 16:56 job.xml
[2026-01-10 02:50:48] -rw-r--r--. 3 boincer umatlas 226714445 Jan  9 16:56 EVNT.47898824._001490.pool.root.1
[2026-01-10 02:50:48] -rw-r--r--. 3 boincer umatlas 226714445 Jan  9 16:56 ATLAS.root_0
[2026-01-10 02:50:48] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 16:56 start_atlas.sh
[2026-01-10 02:50:48] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 16:56 shared
[2026-01-10 02:50:48] -rw-r--r--. 2 boincer umatlas    592394 Jan  9 16:56 input.tar.gz
[2026-01-10 02:50:48] -rw-r--r--. 1 boincer umatlas         0 Jan  9 16:56 boinc_lockfile
[2026-01-10 02:50:48] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 21:40 pandaJob.out
[2026-01-10 02:50:48] -rw-------. 1 boincer umatlas        57 Jan  9 21:40 setup.sh.local
[2026-01-10 02:50:48] -rw-------. 1 boincer umatlas    989382 Jan  9 21:40 agis_schedconf.cvmfs.json
[2026-01-10 02:50:48] -rw-r--r--. 1 boincer umatlas      6944 Jan 10 02:47 init_data.xml
[2026-01-10 02:50:48] -rw-------. 1 boincer umatlas 215702902 Jan 10 02:48 HITS.47898826._038792.pool.root.1
[2026-01-10 02:50:48] -rw-r--r--. 1 boincer umatlas       530 Jan 10 02:48 boinc_task_state.xml
[2026-01-10 02:50:48] -rw-------. 1 boincer umatlas      1047 Jan 10 02:49 memory_monitor_summary.json
[2026-01-10 02:50:48] -rw-------. 1 boincer umatlas   1516240 Jan 10 02:49 agis_ddmendpoints.agis.ALL.json
[2026-01-10 02:50:48] -rw-------. 1 boincer umatlas    524742 Jan 10 02:49 log.47898826._038792.job.log.tgz.1
[2026-01-10 02:50:48] -rw-------. 1 boincer umatlas        95 Jan 10 02:50 pilot_heartbeat.json
[2026-01-10 02:50:48] -rw-------. 1 boincer umatlas      7798 Jan 10 02:50 heartbeat.json
[2026-01-10 02:50:48] -rw-------. 1 boincer umatlas       892 Jan 10 02:50 pilotlog.txt
[2026-01-10 02:50:48] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 02:50 boinc_mmap_file
[2026-01-10 02:50:48] -rw-------. 1 boincer umatlas   2421614 Jan 10 02:50 log.47898826._038792.job.log.1
[2026-01-10 02:50:48] -rw-------. 1 boincer umatlas       357 Jan 10 02:50 output.list
[2026-01-10 02:50:48] -rw-r--r--. 1 boincer umatlas       620 Jan 10 02:50 runtime_log
[2026-01-10 02:50:48] -rw-r--r--. 1 boincer umatlas        28 Jan 10 02:50 wrapper_checkpoint.txt
[2026-01-10 02:50:48] -rw-------. 1 boincer umatlas   2969600 Jan 10 02:50 result.tar.gz
[2026-01-10 02:50:48] -rw-------. 1 boincer umatlas       785 Jan 10 02:50 SM4LDmrCJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0CmKDmLXww7m.diag
[2026-01-10 02:50:48] -rw-r--r--. 1 boincer umatlas      9423 Jan 10 02:50 runtime_log.err
[2026-01-10 02:50:48] -rw-r--r--. 1 boincer umatlas      4412 Jan 10 02:50 stderr.txt
[2026-01-10 02:50:48] HITS file was successfully produced:
[2026-01-10 02:50:48] -rw-------. 1 boincer umatlas 215702902 Jan 10 02:48 shared/HITS.pool.root.1
[2026-01-10 02:50:48]  *** Contents of shared directory: ***
[2026-01-10 02:50:48] total 435556
[2026-01-10 02:50:48] -rw-r--r--. 3 boincer umatlas 226714445 Jan  9 16:56 ATLAS.root_0
[2026-01-10 02:50:48] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 16:56 start_atlas.sh
[2026-01-10 02:50:48] -rw-r--r--. 2 boincer umatlas    592394 Jan  9 16:56 input.tar.gz
[2026-01-10 02:50:48] -rw-------. 1 boincer umatlas 215702902 Jan 10 02:48 HITS.pool.root.1
[2026-01-10 02:50:48] -rw-------. 1 boincer umatlas   2969600 Jan 10 02:50 result.tar.gz
02:50:50 (735574): run_atlas exited; CPU time 42329.416776
02:50:50 (735574): called boinc_finish(0)

</stderr_txt>
]]>

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