Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:46:02 (4164698): wrapper (7.7.26015): starting
14:46:02 (4164698): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 14:46:02] Arguments: --nthreads 8
[2026-01-09 14:46:02] Threads: 8
[2026-01-09 14:46:02] Checking for CVMFS
[2026-01-09 14:46:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 14:46:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 14:46:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 14:46:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 14:46:04] 2.13.3.0 10749 50162 498780 154955 1 373 24846504 32935937 57165 16776704 0 526299828 99.784 283892090 29010 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 14:46:04] CVMFS is ok
[2026-01-09 14:46:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 14:46:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 14:46:04] Further information can be found at the LHC@home message board.
[2026-01-09 14:46:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 14:46:04] Checking for apptainer binary...
[2026-01-09 14:46:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 14:46:04] Running /usr/bin/apptainer --version
[2026-01-09 14:46:04] apptainer version 1.4.5-2.el9
[2026-01-09 14:46:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 14:46:05] lc-12-33.aglt2.org
[2026-01-09 14:46:05] apptainer works
[2026-01-09 14:46:05] Set ATHENA_PROC_NUMBER=8
[2026-01-09 14:46:05] Set ATHENA_CORE_NUMBER=8
[2026-01-09 14:46:05] Starting ATLAS job with PandaID=6963189485
[2026-01-09 14:46:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:20:15 (4164698): BOINC client no longer exists - exiting
15:20:15 (4164698): timer handler: client dead, exiting
15:28:46 (623428): wrapper (7.7.26015): starting
15:28:46 (623428): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 15:28:46] Arguments: --nthreads 8
[2026-01-09 15:28:46] Threads: 8
[2026-01-09 15:28:46] This job has been restarted, cleaning up previous attempt
[2026-01-09 15:28:46] Checking for CVMFS
[2026-01-09 15:28:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 15:28:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 15:28:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 15:28:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 15:28:48] 2.13.3.0 10749 50205 496736 154956 2 341 25759242 32935937 53870 16776704 0 527086519 99.784 284145527 29012 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 15:28:48] CVMFS is ok
[2026-01-09 15:28:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 15:28:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 15:28:48] Further information can be found at the LHC@home message board.
[2026-01-09 15:28:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 15:28:48] Checking for apptainer binary...
[2026-01-09 15:28:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 15:28:48] Running /usr/bin/apptainer --version
[2026-01-09 15:28:48] apptainer version 1.4.5-2.el9
[2026-01-09 15:28:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 15:28:49] lc-12-33.aglt2.org
[2026-01-09 15:28:49] apptainer works
[2026-01-09 15:28:49] Set ATHENA_PROC_NUMBER=8
[2026-01-09 15:28:49] Set ATHENA_CORE_NUMBER=8
[2026-01-09 15:28:49] Starting ATLAS job with PandaID=6963189485
[2026-01-09 15:28:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 23:37:43]  *** The last 200 lines of the pilot log: ***
[2026-01-09 23:37:43] 2026-01-10 04:36:25,720 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963189485/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 23:37:43] 2026-01-10 04:36:25,727 | INFO     | extracted standard info from prmon json
[2026-01-09 23:37:43] 2026-01-10 04:36:25,727 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 23:37:43] 2026-01-10 04:36:25,727 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 23:37:43] 2026-01-10 04:36:25,727 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 23:37:43] 2026-01-10 04:36:25,727 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 23:37:43] 2026-01-10 04:36:25,740 | INFO     | fitting pss+swap vs Time
[2026-01-09 23:37:43] 2026-01-10 04:36:25,741 | INFO     | sum of square deviations: 33653611961.16995
[2026-01-09 23:37:43] 2026-01-10 04:36:25,746 | INFO     | sum of deviations: 60381132826.81128
[2026-01-09 23:37:43] 2026-01-10 04:36:25,746 | INFO     | mean x: 1768005170.1006289
[2026-01-09 23:37:43] 2026-01-10 04:36:25,746 | INFO     | mean y: 2510872.962264151
[2026-01-09 23:37:43] 2026-01-10 04:36:25,746 | INFO     | intersect: -3169634664.8632064
[2026-01-09 23:37:43] 2026-01-10 04:36:25,747 | INFO     | chi2: 2.435909658192445
[2026-01-09 23:37:43] 2026-01-10 04:36:25,748 | INFO     | sum of square deviations: 32606388361.118553
[2026-01-09 23:37:43] 2026-01-10 04:36:25,753 | INFO     | sum of deviations: 90247741451.41547
[2026-01-09 23:37:43] 2026-01-10 04:36:25,753 | INFO     | mean x: 1768005017.6016948
[2026-01-09 23:37:43] 2026-01-10 04:36:25,753 | INFO     | mean y: 2515184.4809322036
[2026-01-09 23:37:43] 2026-01-10 04:36:25,753 | INFO     | intersect: -4890957160.453421
[2026-01-09 23:37:43] 2026-01-10 04:36:25,754 | INFO     | chi2: 1.7301694762397344
[2026-01-09 23:37:43] 2026-01-10 04:36:25,754 | INFO     | current chi2=1.7301694762397344 (change=28.972346309279867 %)
[2026-01-09 23:37:43] 2026-01-10 04:36:25,754 | INFO     | sum of square deviations: 31581118661.06632
[2026-01-09 23:37:43] 2026-01-10 04:36:25,759 | INFO     | sum of deviations: 89251641651.89085
[2026-01-09 23:37:43] 2026-01-10 04:36:25,759 | INFO     | mean x: 1768004865.1027837
[2026-01-09 23:37:43] 2026-01-10 04:36:25,759 | INFO     | mean y: 2515036.3147751605
[2026-01-09 23:37:43] 2026-01-10 04:36:25,759 | INFO     | intersect: -4994057072.243502
[2026-01-09 23:37:43] 2026-01-10 04:36:25,760 | INFO     | chi2: 1.7303672855775667
[2026-01-09 23:37:43] 2026-01-10 04:36:25,760 | INFO     | current chi2=1.7303672855775667 (change=-0.011432945763337593 %)
[2026-01-09 23:37:43] 2026-01-10 04:36:25,760 | INFO     | right removable region: 466
[2026-01-09 23:37:43] 2026-01-10 04:36:25,761 | INFO     | sum of square deviations: 32606359081.11856
[2026-01-09 23:37:43] 2026-01-10 04:36:25,766 | INFO     | sum of deviations: -28197461208.677963
[2026-01-09 23:37:43] 2026-01-10 04:36:25,766 | INFO     | mean x: 1768005322.6016948
[2026-01-09 23:37:43] 2026-01-10 04:36:25,766 | INFO     | mean y: 2523726.0974576273
[2026-01-09 23:37:43] 2026-01-10 04:36:25,766 | INFO     | intersect: 1531466634.9567943
[2026-01-09 23:37:43] 2026-01-10 04:36:25,767 | INFO     | chi2: 0.7574443333021577
[2026-01-09 23:37:43] 2026-01-10 04:36:25,767 | INFO     | current chi2=0.7574443333021577 (change=68.90507286447497 %)
[2026-01-09 23:37:43] 2026-01-10 04:36:25,768 | INFO     | sum of square deviations: 31581088892.269737
[2026-01-09 23:37:43] 2026-01-10 04:36:25,772 | INFO     | sum of deviations: -38521576507.69164
[2026-01-09 23:37:43] 2026-01-10 04:36:25,772 | INFO     | mean x: 1768005475.1006424
[2026-01-09 23:37:43] 2026-01-10 04:36:25,773 | INFO     | mean y: 2525253.972162741
[2026-01-09 23:37:43] 2026-01-10 04:36:25,773 | INFO     | intersect: 2159080349.5685606
[2026-01-09 23:37:43] 2026-01-10 04:36:25,773 | INFO     | chi2: 0.7263853402247533
[2026-01-09 23:37:43] 2026-01-10 04:36:25,773 | INFO     | current chi2=0.7263853402247533 (change=4.1004984408556355 %)
[2026-01-09 23:37:43] 2026-01-10 04:36:25,773 | INFO     | left removable region: 20
[2026-01-09 23:37:43] 2026-01-10 04:36:25,774 | INFO     | sum of square deviations: 27509496665.35408
[2026-01-09 23:37:43] 2026-01-10 04:36:25,778 | INFO     | sum of deviations: -6048238686.340799
[2026-01-09 23:37:43] 2026-01-10 04:36:25,779 | INFO     | mean x: 1768005444.5964127
[2026-01-09 23:37:43] 2026-01-10 04:36:25,779 | INFO     | mean y: 2529477.2869955157
[2026-01-09 23:37:43] 2026-01-10 04:36:25,779 | INFO     | intersect: 391243202.5052592
[2026-01-09 23:37:43] 2026-01-10 04:36:25,780 | INFO     | chi2: 0.011256236614081948
[2026-01-09 23:37:43] 2026-01-10 04:36:25,780 | INFO     | current memory leak: -0.22 B/s (using 446 data points, chi2=0.01)
[2026-01-09 23:37:43] 2026-01-10 04:36:25,780 | INFO     | could have reported an average CPU frequency of 2934 MHz (19 samples)
[2026-01-09 23:37:43] 2026-01-10 04:36:25,781 | INFO     | ..............................
[2026-01-09 23:37:43] 2026-01-10 04:36:25,781 | INFO     | . Timing measurements:
[2026-01-09 23:37:43] 2026-01-10 04:36:25,781 | INFO     | . get job = 0 s
[2026-01-09 23:37:43] 2026-01-10 04:36:25,781 | INFO     | . initial setup = 2 s
[2026-01-09 23:37:43] 2026-01-10 04:36:25,781 | INFO     | . payload setup = 20 s
[2026-01-09 23:37:43] 2026-01-10 04:36:25,781 | INFO     | . stage-in = 0 s
[2026-01-09 23:37:43] 2026-01-10 04:36:25,781 | INFO     | . payload execution = 29117 s
[2026-01-09 23:37:43] 2026-01-10 04:36:25,781 | INFO     | . stage-out = 6 s
[2026-01-09 23:37:43] 2026-01-10 04:36:25,781 | INFO     | . log creation = 0 s
[2026-01-09 23:37:43] 2026-01-10 04:36:25,781 | INFO     | ..............................
[2026-01-09 23:37:43] 2026-01-10 04:36:25,782 | INFO     | monitor loop #1407: job 0:6963189485 is in state 'finished'
[2026-01-09 23:37:43] 2026-01-10 04:36:25,782 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 23:37:43] 2026-01-10 04:36:26,194 | INFO     | 
[2026-01-09 23:37:43] 2026-01-10 04:36:26,194 | INFO     | job summary report
[2026-01-09 23:37:43] 2026-01-10 04:36:26,195 | INFO     | --------------------------------------------------
[2026-01-09 23:37:43] 2026-01-10 04:36:26,195 | INFO     | PanDA job id: 6963189485
[2026-01-09 23:37:43] 2026-01-10 04:36:26,195 | INFO     | task id: 47898826
[2026-01-09 23:37:43] 2026-01-10 04:36:26,195 | INFO     | errors: (none)
[2026-01-09 23:37:43] 2026-01-10 04:36:26,195 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 23:37:43] 2026-01-10 04:36:26,195 | INFO     | pilot state: finished 
[2026-01-09 23:37:43] 2026-01-10 04:36:26,195 | INFO     | transexitcode: 0
[2026-01-09 23:37:43] 2026-01-10 04:36:26,195 | INFO     | exeerrorcode: 0
[2026-01-09 23:37:43] 2026-01-10 04:36:26,195 | INFO     | exeerrordiag: 
[2026-01-09 23:37:43] 2026-01-10 04:36:26,195 | INFO     | exitcode: 0
[2026-01-09 23:37:43] 2026-01-10 04:36:26,195 | INFO     | exitmsg: OK
[2026-01-09 23:37:43] 2026-01-10 04:36:26,195 | INFO     | cpuconsumptiontime: 60019 s
[2026-01-09 23:37:43] 2026-01-10 04:36:26,195 | INFO     | nevents: 400
[2026-01-09 23:37:43] 2026-01-10 04:36:26,195 | INFO     | neventsw: 0
[2026-01-09 23:37:43] 2026-01-10 04:36:26,196 | INFO     | pid: 706952
[2026-01-09 23:37:43] 2026-01-10 04:36:26,196 | INFO     | pgrp: 706952
[2026-01-09 23:37:43] 2026-01-10 04:36:26,196 | INFO     | corecount: 8
[2026-01-09 23:37:43] 2026-01-10 04:36:26,196 | INFO     | event service: False
[2026-01-09 23:37:43] 2026-01-10 04:36:26,196 | INFO     | sizes: {0: 2283143, 1: 2283828, 2: 2284027, 13: 2284027, 16: 2284345, 24: 2284373, 29142: 2321459, 29143: 2321458, 29150: 2330512, 29151: 2330568, 29183: 2330762}
[2026-01-09 23:37:43] 2026-01-10 04:36:26,196 | INFO     | --------------------------------------------------
[2026-01-09 23:37:43] 2026-01-10 04:36:26,196 | INFO     | 
[2026-01-09 23:37:43] 2026-01-10 04:36:26,196 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-09 23:37:43] 2026-01-10 04:36:26,334 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 23:37:43] 2026-01-10 04:36:26,334 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 23:37:43] 2026-01-10 04:36:26,334 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 23:37:43] 2026-01-10 04:36:26,334 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 23:37:43] 2026-01-10 04:36:26,334 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 23:37:43] 2026-01-10 04:36:26,334 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 23:37:43] 2026-01-10 04:36:26,334 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 23:37:43] 2026-01-10 04:36:26,334 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 23:37:43] 2026-01-10 04:36:26,335 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 23:37:43] 2026-01-10 04:36:26,335 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 23:37:43] 2026-01-10 04:36:26,335 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 23:37:43] 2026-01-10 04:36:26,335 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 23:37:43] 2026-01-10 04:36:26,335 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 23:37:43] 2026-01-10 04:36:26,335 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 23:37:43] 2026-01-10 04:36:26,335 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 23:37:43] 2026-01-10 04:36:26,335 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 23:37:43] 2026-01-10 04:36:26,335 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 23:37:43] 2026-01-10 04:36:26,356 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 23:37:43] 2026-01-10 04:36:26,356 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 23:37:43] 2026-01-10 04:36:26,356 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 23:37:43] 2026-01-10 04:36:26,356 | INFO     | job 6963189485 has completed (purged errors)
[2026-01-09 23:37:43] 2026-01-10 04:36:26,356 | INFO     | overall cleanup function is called
[2026-01-09 23:37:43] 2026-01-10 04:36:27,373 | INFO     | --- collectZombieJob: --- 10, [706952]
[2026-01-09 23:37:43] 2026-01-10 04:36:27,373 | INFO     | zombie collector waiting for pid 706952
[2026-01-09 23:37:43] 2026-01-10 04:36:27,374 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 23:37:43] 2026-01-10 04:36:27,374 | INFO     | collected zombie processes
[2026-01-09 23:37:43] 2026-01-10 04:36:27,374 | INFO     | will attempt to kill all subprocesses of pid=706952
[2026-01-09 23:37:43] 2026-01-10 04:36:29,406 | INFO     | process IDs to be killed: [706952] (in reverse order)
[2026-01-09 23:37:43] 2026-01-10 04:36:29,764 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 23:37:43] 2026-01-10 04:36:29,765 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 23:37:43] 2026-01-10 04:36:29,885 | INFO     | did not find any defunct processes belonging to 706952
[2026-01-09 23:37:43] 2026-01-10 04:36:30,009 | INFO     | did not find any defunct processes belonging to 706952
[2026-01-09 23:37:43] 2026-01-10 04:36:30,036 | INFO     | ready for new job
[2026-01-09 23:37:43] 2026-01-10 04:36:30,037 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 23:37:43] 2026-01-10 04:36:30,039 | INFO     | ***************************************
[2026-01-09 23:37:43] 2026-01-10 04:36:30,039 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 23:37:43] 2026-01-10 04:36:30,039 | INFO     | ***************************************
[2026-01-09 23:37:43] 2026-01-10 04:36:30,039 | INFO     | 
[2026-01-09 23:37:43] 2026-01-10 04:36:30,089 | INFO     | architecture information:
[2026-01-09 23:37:43] 2026-01-10 04:36:30,093 | INFO     | executing command: cat /etc/os-release
[2026-01-09 23:37:43] 2026-01-10 04:36:30,195 | INFO     | cat /etc/os-release:
[2026-01-09 23:37:43] NAME="CentOS Linux"
[2026-01-09 23:37:43] VERSION="7 (Core)"
[2026-01-09 23:37:43] ID="centos"
[2026-01-09 23:37:43] ID_LIKE="rhel fedora"
[2026-01-09 23:37:43] VERSION_ID="7"
[2026-01-09 23:37:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 23:37:43] ANSI_COLOR="0;31"
[2026-01-09 23:37:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 23:37:43] HOME_URL="https://www.centos.org/"
[2026-01-09 23:37:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 23:37:43] 
[2026-01-09 23:37:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 23:37:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 23:37:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 23:37:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 23:37:43] 
[2026-01-09 23:37:43] 2026-01-10 04:36:30,195 | INFO     | ***************************************
[2026-01-09 23:37:43] 2026-01-10 04:36:30,698 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-09 23:37:43] 2026-01-10 04:36:30,791 | INFO     | sufficient remaining disk space (72990326784 B)
[2026-01-09 23:37:43] 2026-01-10 04:36:30,791 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 23:37:43] 2026-01-10 04:36:30,791 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 23:37:43] 2026-01-10 04:36:30,791 | INFO     | update_server=False
[2026-01-09 23:37:43] 2026-01-10 04:36:30,791 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 23:37:43] 2026-01-10 04:36:30,840 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 23:37:43] 2026-01-10 04:36:30,841 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 23:37:43] 2026-01-10 04:36:30,841 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:37:43] 2026-01-10 04:36:30,841 | INFO     | will abort loop
[2026-01-09 23:37:43] 2026-01-10 04:36:30,844 | INFO     | all job control threads have been joined
[2026-01-09 23:37:43] 2026-01-10 04:36:30,875 | INFO     | all data control threads have been joined
[2026-01-09 23:37:43] 2026-01-10 04:36:30,943 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:37:43] 2026-01-10 04:36:31,030 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 23:37:43] 2026-01-10 04:36:31,335 | INFO     | all payload control threads have been joined
[2026-01-09 23:37:43] 2026-01-10 04:36:31,703 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 23:37:43] 2026-01-10 04:36:31,797 | INFO     | [job] retrieve thread has finished
[2026-01-09 23:37:43] 2026-01-10 04:36:31,852 | INFO     | [job] job monitor thread has finished
[2026-01-09 23:37:43] 2026-01-10 04:36:31,853 | INFO     | [job] control thread has finished
[2026-01-09 23:37:43] 2026-01-10 04:36:31,862 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 23:37:43] 2026-01-10 04:36:31,894 | INFO     | [data] control thread has finished
[2026-01-09 23:37:43] 2026-01-10 04:36:31,952 | INFO     | [job] queue monitor thread has finished
[2026-01-09 23:37:43] 2026-01-10 04:36:32,049 | INFO     | [payload] validate_post thread has finished
[2026-01-09 23:37:43] 2026-01-10 04:36:32,345 | INFO     | [payload] control thread has finished
[2026-01-09 23:37:43] 2026-01-10 04:36:32,399 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 23:37:43] 2026-01-10 04:36:32,526 | INFO     | [payload] failed_post thread has finished
[2026-01-09 23:37:43] 2026-01-10 04:36:32,791 | INFO     | [job] validate thread has finished
[2026-01-09 23:37:43] 2026-01-10 04:36:32,792 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 23:37:43] 2026-01-10 04:36:33,047 | INFO     | [data] copytool_out thread has finished
[2026-01-09 23:37:43] 2026-01-10 04:36:33,243 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 23:37:43] 2026-01-10 04:36:33,248 | INFO     | [data] copytool_in thread has finished
[2026-01-09 23:37:43] 2026-01-10 04:36:35,717 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 23:37:43] 2026-01-10 04:37:01,679 | INFO     | PID=654518 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 23:37:43] 2026-01-10 04:37:01,679 | INFO     | .. there are 92 such processes running
[2026-01-09 23:37:43] 2026-01-10 04:37:01,679 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 23:37:43] 2026-01-10 04:37:01,679 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 23:37:43] 2026-01-10 04:37:01,679 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 23:37:43] 2026-01-10 04:37:16,415 | INFO     | [monitor] cgroup control has ended
[2026-01-09 23:37:43] 2026-01-10 04:37:17,663 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139776692246336)>', '<ExcThread(monitor, started 139776338417408)>']
[2026-01-09 23:37:43] 2026-01-10 04:37:17,833 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 23:37:43] 2026-01-10 04:37:17,833 | INFO     | [monitor] control thread has ended
[2026-01-09 23:37:43] 2026-01-10 04:37:22,703 | INFO     | all workflow threads have been joined
[2026-01-09 23:37:43] 2026-01-10 04:37:22,703 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 23:37:43] 2026-01-10 04:37:22,704 | INFO     | traces error code: 0
[2026-01-09 23:37:43] 2026-01-10 04:37:22,704 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 23:37:43] 2026-01-10 04:37:23,020 [wrapper] ==== pilot stdout END ====
[2026-01-09 23:37:43] 2026-01-10 04:37:23,044 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 23:37:43] 2026-01-10 04:37:23,060 [wrapper] pilotpid: 654518
[2026-01-09 23:37:43] 2026-01-10 04:37:23,078 [wrapper] Pilot exit status: 0
[2026-01-09 23:37:43] 2026-01-10 04:37:23,146 [wrapper] pandaids: 6963189485 6963189485
[2026-01-09 23:37:43] 2026-01-10 04:37:24,190 [wrapper] cleanup supervisor_pilot 2006079 654519
[2026-01-09 23:37:43] 2026-01-10 04:37:24,218 [wrapper] Test setup, not cleaning
[2026-01-09 23:37:43] 2026-01-10 04:37:24,258 [wrapper] apfmon messages muted
[2026-01-09 23:37:43] 2026-01-10 04:37:24,280 [wrapper] ==== wrapper stdout END ====
[2026-01-09 23:37:43] 2026-01-10 04:37:24,334 [wrapper] ==== wrapper stderr END ====
[2026-01-09 23:37:43]  *** Error codes and diagnostics ***
[2026-01-09 23:37:43]     "exeErrorCode": 0,
[2026-01-09 23:37:43]     "exeErrorDiag": "",
[2026-01-09 23:37:43]     "pilotErrorCode": 0,
[2026-01-09 23:37:43]     "pilotErrorDiag": "",
[2026-01-09 23:37:43]  *** Listing of results directory ***
[2026-01-09 23:37:43] total 661908
[2026-01-09 23:37:43] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 23:37:43] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 23:21 queuedata.json
[2026-01-09 23:37:43] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 23:37:43] -rwx------. 1 boincer umatlas     36322 Jan  8 23:22 runpilot2-wrapper.sh
[2026-01-09 23:37:43] -rw-r--r--. 1 boincer umatlas       100 Jan  9 14:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 23:37:43] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 14:46 run_atlas
[2026-01-09 23:37:43] -rw-r--r--. 1 boincer umatlas       105 Jan  9 14:46 job.xml
[2026-01-09 23:37:43] -rw-r--r--. 3 boincer umatlas 222332332 Jan  9 14:46 EVNT.47898824._001473.pool.root.1
[2026-01-09 23:37:43] -rw-r--r--. 3 boincer umatlas 222332332 Jan  9 14:46 ATLAS.root_0
[2026-01-09 23:37:43] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 14:46 start_atlas.sh
[2026-01-09 23:37:43] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 14:46 shared
[2026-01-09 23:37:43] -rw-r--r--. 2 boincer umatlas    592396 Jan  9 14:46 input.tar.gz
[2026-01-09 23:37:43] -rw-r--r--. 1 boincer umatlas         0 Jan  9 14:46 boinc_lockfile
[2026-01-09 23:37:43] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 15:28 pandaJob.out
[2026-01-09 23:37:43] -rw-------. 1 boincer umatlas        57 Jan  9 15:28 setup.sh.local
[2026-01-09 23:37:43] -rw-------. 1 boincer umatlas    989381 Jan  9 15:29 agis_schedconf.cvmfs.json
[2026-01-09 23:37:43] -rw-------. 1 boincer umatlas 221660792 Jan  9 23:34 HITS.47898826._038354.pool.root.1
[2026-01-09 23:37:43] -rw-r--r--. 1 boincer umatlas       530 Jan  9 23:34 boinc_task_state.xml
[2026-01-09 23:37:43] -rw-------. 1 boincer umatlas      1046 Jan  9 23:35 memory_monitor_summary.json
[2026-01-09 23:37:43] -rw-------. 1 boincer umatlas   1516240 Jan  9 23:35 agis_ddmendpoints.agis.ALL.json
[2026-01-09 23:37:43] -rw-------. 1 boincer umatlas    599837 Jan  9 23:35 log.47898826._038354.job.log.tgz.1
[2026-01-09 23:37:43] -rw-------. 1 boincer umatlas        96 Jan  9 23:36 pilot_heartbeat.json
[2026-01-09 23:37:43] -rw-------. 1 boincer umatlas      7825 Jan  9 23:36 heartbeat.json
[2026-01-09 23:37:43] -rw-r--r--. 1 boincer umatlas      6861 Jan  9 23:36 init_data.xml
[2026-01-09 23:37:43] -rw-------. 1 boincer umatlas      5009 Jan  9 23:37 pilotlog.txt
[2026-01-09 23:37:43] -rw-------. 1 boincer umatlas   3172045 Jan  9 23:37 log.47898826._038354.job.log.1
[2026-01-09 23:37:43] -rw-------. 1 boincer umatlas       357 Jan  9 23:37 output.list
[2026-01-09 23:37:43] -rw-r--r--. 1 boincer umatlas       620 Jan  9 23:37 runtime_log
[2026-01-09 23:37:43] -rw-------. 1 boincer umatlas   3788800 Jan  9 23:37 result.tar.gz
[2026-01-09 23:37:43] -rw-r--r--. 1 boincer umatlas      9428 Jan  9 23:37 runtime_log.err
[2026-01-09 23:37:43] -rw-------. 1 boincer umatlas       782 Jan  9 23:37 1H6LDmFCJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuvgKDmW5bzpm.diag
[2026-01-09 23:37:43] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 23:37 boinc_mmap_file
[2026-01-09 23:37:43] -rw-r--r--. 1 boincer umatlas        27 Jan  9 23:37 wrapper_checkpoint.txt
[2026-01-09 23:37:43] -rw-r--r--. 1 boincer umatlas     23521 Jan  9 23:37 stderr.txt
[2026-01-09 23:37:43] HITS file was successfully produced:
[2026-01-09 23:37:43] -rw-------. 1 boincer umatlas 221660792 Jan  9 23:34 shared/HITS.pool.root.1
[2026-01-09 23:37:43]  *** Contents of shared directory: ***
[2026-01-09 23:37:43] total 437896
[2026-01-09 23:37:43] -rw-r--r--. 3 boincer umatlas 222332332 Jan  9 14:46 ATLAS.root_0
[2026-01-09 23:37:43] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 14:46 start_atlas.sh
[2026-01-09 23:37:43] -rw-r--r--. 2 boincer umatlas    592396 Jan  9 14:46 input.tar.gz
[2026-01-09 23:37:43] -rw-------. 1 boincer umatlas 221660792 Jan  9 23:34 HITS.pool.root.1
[2026-01-09 23:37:43] -rw-------. 1 boincer umatlas   3788800 Jan  9 23:37 result.tar.gz
23:37:45 (623428): run_atlas exited; CPU time 61918.505649
23:37:45 (623428): called boinc_finish(0)

</stderr_txt>
]]>

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