Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:09:58 (20208): wrapper (7.7.26015): starting
14:09:58 (20208): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 14:09:58] Arguments: --nthreads 12
[2026-01-09 14:09:58] Threads: 12
[2026-01-09 14:09:58] Checking for CVMFS
[2026-01-09 14:09:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 14:09:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 14:09:58] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 14:09:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 14:09:58] 2.11.2.0 3165 137064 96644 154954 2 56 14198889 20275200 1 130560 0 50998001 99.888 8133754 40756 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 14:09:58] CVMFS is ok
[2026-01-09 14:09:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 14:09:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 14:09:58] Further information can be found at the LHC@home message board.
[2026-01-09 14:09:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 14:09:58] Checking for apptainer binary...
[2026-01-09 14:09:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 14:09:58] Running /usr/bin/apptainer --version
[2026-01-09 14:09:58] apptainer version 1.3.2-1.el7
[2026-01-09 14:09:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 14:10:00] c-115-40.aglt2.org
[2026-01-09 14:10:00] apptainer works
[2026-01-09 14:10:00] Set ATHENA_PROC_NUMBER=12
[2026-01-09 14:10:00] Set ATHENA_CORE_NUMBER=12
[2026-01-09 14:10:00] Starting ATLAS job with PandaID=6963191978
[2026-01-09 14:10:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 15:45:28]  *** The last 200 lines of the pilot log: ***
[2026-01-09 15:45:28]  workdir=None
[2026-01-09 15:45:28] ]
[2026-01-09 15:45:28] 2026-01-09 20:44:19,018 | INFO     | transferring file log.47898826._038846.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6963191978/log.47898826._038846.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-09 15:45:28] 2026-01-09 20:44:19,018 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6963191978/log.47898826._038846.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898826._038846.job
[2026-01-09 15:45:28] 2026-01-09 20:44:19,041 | INFO     | adding to output.list: log.47898826._038846.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/52/bb/log.47898826._038846.job.log.tg
[2026-01-09 15:45:28] 2026-01-09 20:44:19,042 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-09 15:45:28] 2026-01-09 20:44:19,042 | INFO     | summary of transferred files:
[2026-01-09 15:45:28] 2026-01-09 20:44:19,042 | INFO     |  -- lfn=log.47898826._038846.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 15:45:28] 2026-01-09 20:44:19,042 | INFO     | stage-out finished correctly
[2026-01-09 15:45:28] 2026-01-09 20:44:19,119 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 15:45:28] 2026-01-09 20:44:19,627 | INFO     | time since job start (5645s) is within the limit (349056.0s)
[2026-01-09 15:45:28] 2026-01-09 20:44:20,473 | INFO     | job 6963191978 has state=finished
[2026-01-09 15:45:28] 2026-01-09 20:44:20,473 | INFO     | preparing for final server update for job 6963191978 in state='finished'
[2026-01-09 15:45:28] 2026-01-09 20:44:20,474 | INFO     | this job has now completed (state=finished)
[2026-01-09 15:45:28] 2026-01-09 20:44:20,474 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 15:45:28] 2026-01-09 20:44:20,474 | INFO     | log transfer has been attempted: DONE
[2026-01-09 15:45:28] 2026-01-09 20:44:20,474 | INFO     | job 6963191978 has finished - writing final server update
[2026-01-09 15:45:28] 2026-01-09 20:44:20,475 | INFO     | total number of processed events: 400 (read)
[2026-01-09 15:45:28] 2026-01-09 20:44:20,476 | INFO     | executing command: lscpu
[2026-01-09 15:45:28] 2026-01-09 20:44:20,501 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 15:45:28] 2026-01-09 20:44:20,782 | WARNING  | process 30400 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 15:45:28] 2026-01-09 20:44:20,782 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963191978/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 15:45:28] 2026-01-09 20:44:20,783 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963191978/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 15:45:28] 2026-01-09 20:44:20,783 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-09 15:45:28] 2026-01-09 20:44:20,783 | WARNING  | maxPSS not found in memory monitor output
[2026-01-09 15:45:28] 2026-01-09 20:44:20,784 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4557152 B
[2026-01-09 15:45:28] 2026-01-09 20:44:20,784 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15596 B
[2026-01-09 15:45:28] 2026-01-09 20:44:20,784 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 15:45:28] 2026-01-09 20:44:21,632 | INFO     | time since job start (5647s) is within the limit (349056.0s)
[2026-01-09 15:45:28] 2026-01-09 20:44:23,638 | INFO     | time since job start (5649s) is within the limit (349056.0s)
[2026-01-09 15:45:28] 2026-01-09 20:44:25,089 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 15:45:28] 2026-01-09 20:44:25,096 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2026-01-09 15:45:28] 2026-01-09 20:44:25,098 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963191978/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 15:45:28] 2026-01-09 20:44:25,099 | INFO     | extracted standard info from prmon json
[2026-01-09 15:45:28] 2026-01-09 20:44:25,099 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 15:45:28] 2026-01-09 20:44:25,099 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 15:45:28] 2026-01-09 20:44:25,100 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 15:45:28] 2026-01-09 20:44:25,100 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 15:45:28] 2026-01-09 20:44:25,102 | INFO     | fitting pss+swap vs Time
[2026-01-09 15:45:28] 2026-01-09 20:44:25,102 | INFO     | sum of square deviations: 190403570.0
[2026-01-09 15:45:28] 2026-01-09 20:44:25,103 | INFO     | sum of deviations: 1275231108.0
[2026-01-09 15:45:28] 2026-01-09 20:44:25,103 | INFO     | mean x: 1767988710.0
[2026-01-09 15:45:28] 2026-01-09 20:44:25,103 | INFO     | mean y: 2695508.8352941177
[2026-01-09 15:45:28] 2026-01-09 20:44:25,103 | INFO     | intersect: -11838438570.66117
[2026-01-09 15:45:28] 2026-01-09 20:44:25,103 | INFO     | chi2: 0.006007698888983846
[2026-01-09 15:45:28] 2026-01-09 20:44:25,103 | INFO     | current memory leak: 6.70 B/s (using 85 data points, chi2=0.01)
[2026-01-09 15:45:28] 2026-01-09 20:44:25,104 | INFO     | could have reported an average CPU frequency of 2112 MHz (7 samples)
[2026-01-09 15:45:28] 2026-01-09 20:44:25,104 | INFO     | ..............................
[2026-01-09 15:45:28] 2026-01-09 20:44:25,104 | INFO     | . Timing measurements:
[2026-01-09 15:45:28] 2026-01-09 20:44:25,104 | INFO     | . get job = 0 s
[2026-01-09 15:45:28] 2026-01-09 20:44:25,104 | INFO     | . initial setup = 2 s
[2026-01-09 15:45:28] 2026-01-09 20:44:25,104 | INFO     | . payload setup = 6 s
[2026-01-09 15:45:28] 2026-01-09 20:44:25,105 | INFO     | . stage-in = 0 s
[2026-01-09 15:45:28] 2026-01-09 20:44:25,105 | INFO     | . payload execution = 5616 s
[2026-01-09 15:45:28] 2026-01-09 20:44:25,105 | INFO     | sufficient remaining disk space (18651021312 B)
[2026-01-09 15:45:28] 2026-01-09 20:44:25,105 | INFO     | . stage-out = 0 s
[2026-01-09 15:45:28] 2026-01-09 20:44:25,105 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-09 15:45:28] 2026-01-09 20:44:25,105 | INFO     | . log creation = 0 s
[2026-01-09 15:45:28] 2026-01-09 20:44:25,106 | INFO     | ..............................
[2026-01-09 15:45:28] 2026-01-09 20:44:25,180 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6963191978: 4862502 B (within 4404019200 B limit)
[2026-01-09 15:45:28] 2026-01-09 20:44:25,181 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6963191978/HITS.47898826._038846.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-09 15:45:28] 2026-01-09 20:44:25,181 | INFO     | total size of present files: 0 B (workdir size: 4862502 B)
[2026-01-09 15:45:28] 2026-01-09 20:44:25,181 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6963191978/HITS.47898826._038846.pool.root.1 since it does not exist
[2026-01-09 15:45:28] 2026-01-09 20:44:25,192 | INFO     | 
[2026-01-09 15:45:28] 2026-01-09 20:44:25,192 | INFO     | job summary report
[2026-01-09 15:45:28] 2026-01-09 20:44:25,193 | INFO     | --------------------------------------------------
[2026-01-09 15:45:28] 2026-01-09 20:44:25,193 | INFO     | PanDA job id: 6963191978
[2026-01-09 15:45:28] 2026-01-09 20:44:25,193 | INFO     | task id: 47898826
[2026-01-09 15:45:28] 2026-01-09 20:44:25,193 | INFO     | errors: (none)
[2026-01-09 15:45:28] 2026-01-09 20:44:25,193 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 15:45:28] 2026-01-09 20:44:25,194 | INFO     | pilot state: finished 
[2026-01-09 15:45:28] 2026-01-09 20:44:25,194 | INFO     | transexitcode: 0
[2026-01-09 15:45:28] 2026-01-09 20:44:25,194 | INFO     | exeerrorcode: 0
[2026-01-09 15:45:28] 2026-01-09 20:44:25,194 | INFO     | exeerrordiag: 
[2026-01-09 15:45:28] 2026-01-09 20:44:25,194 | INFO     | exitcode: 0
[2026-01-09 15:45:28] 2026-01-09 20:44:25,195 | INFO     | exitmsg: OK
[2026-01-09 15:45:28] 2026-01-09 20:44:25,195 | INFO     | cpuconsumptiontime: 60956 s
[2026-01-09 15:45:28] 2026-01-09 20:44:25,195 | INFO     | nevents: 400
[2026-01-09 15:45:28] 2026-01-09 20:44:25,195 | INFO     | neventsw: 0
[2026-01-09 15:45:28] 2026-01-09 20:44:25,195 | INFO     | pid: 30400
[2026-01-09 15:45:28] 2026-01-09 20:44:25,196 | INFO     | pgrp: 30400
[2026-01-09 15:45:28] 2026-01-09 20:44:25,196 | INFO     | corecount: 12
[2026-01-09 15:45:28] 2026-01-09 20:44:25,196 | INFO     | event service: False
[2026-01-09 15:45:28] 2026-01-09 20:44:25,196 | INFO     | sizes: {0: 2283800, 1: 2283999, 6: 2284261, 12: 2284289, 5627: 2310873, 5628: 2319871, 5629: 2320055, 5635: 2320249}
[2026-01-09 15:45:28] 2026-01-09 20:44:25,196 | INFO     | --------------------------------------------------
[2026-01-09 15:45:28] 2026-01-09 20:44:25,196 | INFO     | 
[2026-01-09 15:45:28] 2026-01-09 20:44:25,197 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 15:45:28] 2026-01-09 20:44:25,216 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 15:45:28] 2026-01-09 20:44:25,217 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 15:45:28] 2026-01-09 20:44:25,217 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 15:45:28] 2026-01-09 20:44:25,217 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 15:45:28] 2026-01-09 20:44:25,217 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 15:45:28] 2026-01-09 20:44:25,217 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 15:45:28] 2026-01-09 20:44:25,218 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 15:45:28] 2026-01-09 20:44:25,218 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 15:45:28] 2026-01-09 20:44:25,218 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 15:45:28] 2026-01-09 20:44:25,218 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 15:45:28] 2026-01-09 20:44:25,218 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 15:45:28] 2026-01-09 20:44:25,218 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 15:45:28] 2026-01-09 20:44:25,219 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 15:45:28] 2026-01-09 20:44:25,219 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 15:45:28] 2026-01-09 20:44:25,219 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 15:45:28] 2026-01-09 20:44:25,219 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 15:45:28] 2026-01-09 20:44:25,219 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 15:45:28] 2026-01-09 20:44:25,219 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 15:45:28] 2026-01-09 20:44:25,220 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 15:45:28] 2026-01-09 20:44:25,220 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 15:45:28] 2026-01-09 20:44:25,220 | INFO     | job 6963191978 has completed (purged errors)
[2026-01-09 15:45:28] 2026-01-09 20:44:25,220 | INFO     | overall cleanup function is called
[2026-01-09 15:45:28] 2026-01-09 20:44:25,274 | INFO     | number of running child processes to parent process 30400: 1
[2026-01-09 15:45:28] 2026-01-09 20:44:25,274 | INFO     | maximum number of monitored processes: 6
[2026-01-09 15:45:28] 2026-01-09 20:44:25,275 | INFO     | aborting job monitoring since job object (job id=6963191978) has expired
[2026-01-09 15:45:28] 2026-01-09 20:44:26,228 | INFO     | --- collectZombieJob: --- 10, [30400]
[2026-01-09 15:45:28] 2026-01-09 20:44:26,229 | INFO     | zombie collector waiting for pid 30400
[2026-01-09 15:45:28] 2026-01-09 20:44:26,229 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 15:45:28] 2026-01-09 20:44:26,229 | INFO     | collected zombie processes
[2026-01-09 15:45:28] 2026-01-09 20:44:26,229 | INFO     | will attempt to kill all subprocesses of pid=30400
[2026-01-09 15:45:28] 2026-01-09 20:44:26,317 | INFO     | process IDs to be killed: [30400] (in reverse order)
[2026-01-09 15:45:28] 2026-01-09 20:44:26,365 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 15:45:28] 2026-01-09 20:44:26,366 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 15:45:28] 2026-01-09 20:44:26,369 | INFO     | did not find any defunct processes belonging to 30400
[2026-01-09 15:45:28] 2026-01-09 20:44:26,373 | INFO     | did not find any defunct processes belonging to 30400
[2026-01-09 15:45:28] 2026-01-09 20:44:26,373 | INFO     | ready for new job
[2026-01-09 15:45:28] 2026-01-09 20:44:26,373 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 15:45:28] 2026-01-09 20:44:26,374 | INFO     | ***************************************
[2026-01-09 15:45:28] 2026-01-09 20:44:26,374 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 15:45:28] 2026-01-09 20:44:26,374 | INFO     | ***************************************
[2026-01-09 15:45:28] 2026-01-09 20:44:26,375 | INFO     | 
[2026-01-09 15:45:28] 2026-01-09 20:44:26,375 | INFO     | architecture information:
[2026-01-09 15:45:28] 2026-01-09 20:44:26,376 | INFO     | executing command: cat /etc/os-release
[2026-01-09 15:45:28] 2026-01-09 20:44:26,390 | INFO     | cat /etc/os-release:
[2026-01-09 15:45:28] NAME="CentOS Linux"
[2026-01-09 15:45:28] VERSION="7 (Core)"
[2026-01-09 15:45:28] ID="centos"
[2026-01-09 15:45:28] ID_LIKE="rhel fedora"
[2026-01-09 15:45:28] VERSION_ID="7"
[2026-01-09 15:45:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 15:45:28] ANSI_COLOR="0;31"
[2026-01-09 15:45:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 15:45:28] HOME_URL="https://www.centos.org/"
[2026-01-09 15:45:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 15:45:28] 
[2026-01-09 15:45:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 15:45:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 15:45:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 15:45:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 15:45:28] 
[2026-01-09 15:45:28] 2026-01-09 20:44:26,390 | INFO     | ***************************************
[2026-01-09 15:45:28] 2026-01-09 20:44:26,893 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 15:45:28] 2026-01-09 20:44:26,909 | INFO     | sufficient remaining disk space (18656264192 B)
[2026-01-09 15:45:28] 2026-01-09 20:44:26,910 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 15:45:28] 2026-01-09 20:44:26,910 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 15:45:28] 2026-01-09 20:44:26,910 | INFO     | update_server=False
[2026-01-09 15:45:28] 2026-01-09 20:44:26,910 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 15:45:28] 2026-01-09 20:44:26,910 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 15:45:28] 2026-01-09 20:44:26,911 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 15:45:28] 2026-01-09 20:44:26,911 | INFO     | aborting loop
[2026-01-09 15:45:28] 2026-01-09 20:44:27,089 | INFO     | all data control threads have been joined
[2026-01-09 15:45:28] 2026-01-09 20:44:27,130 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 15:45:28] 2026-01-09 20:44:27,764 | INFO     | all job control threads have been joined
[2026-01-09 15:45:28] 2026-01-09 20:44:27,916 | INFO     | [job] retrieve thread has finished
[2026-01-09 15:45:28] 2026-01-09 20:44:27,917 | INFO     | [job] queue monitor thread has finished
[2026-01-09 15:45:28] 2026-01-09 20:44:27,917 | INFO     | [job] job monitor thread has finished
[2026-01-09 15:45:28] 2026-01-09 20:44:27,998 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 15:45:28] 2026-01-09 20:44:28,018 | INFO     | [payload] failed_post thread has finished
[2026-01-09 15:45:28] 2026-01-09 20:44:28,083 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 15:45:28] 2026-01-09 20:44:28,088 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 15:45:28] 2026-01-09 20:44:28,095 | INFO     | [data] control thread has finished
[2026-01-09 15:45:28] 2026-01-09 20:44:28,105 | INFO     | [data] copytool_in thread has finished
[2026-01-09 15:45:28] 2026-01-09 20:44:28,412 | INFO     | all payload control threads have been joined
[2026-01-09 15:45:28] 2026-01-09 20:44:28,610 | INFO     | [payload] validate_post thread has finished
[2026-01-09 15:45:28] 2026-01-09 20:44:28,770 | INFO     | [job] control thread has finished
[2026-01-09 15:45:28] 2026-01-09 20:44:28,952 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 15:45:28] 2026-01-09 20:44:29,136 | INFO     | [data] copytool_out thread has finished
[2026-01-09 15:45:28] 2026-01-09 20:44:29,163 | INFO     | [job] validate thread has finished
[2026-01-09 15:45:28] 2026-01-09 20:44:29,418 | INFO     | [payload] control thread has finished
[2026-01-09 15:45:28] 2026-01-09 20:44:29,700 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 15:45:28] 2026-01-09 20:44:33,706 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 15:45:28] 2026-01-09 20:44:56,833 | INFO     | PID=24016 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 15:45:28] 2026-01-09 20:44:56,833 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 15:45:28] 2026-01-09 20:44:56,834 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 15:45:28] 2026-01-09 20:44:56,834 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 15:45:28] 2026-01-09 20:45:23,225 | INFO     | [monitor] cgroup control has ended
[2026-01-09 15:45:28] 2026-01-09 20:45:23,578 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140621890099008)>', '<ExcThread(monitor, started 140621289338624)>']
[2026-01-09 15:45:28] 2026-01-09 20:45:23,971 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 15:45:28] 2026-01-09 20:45:23,971 | INFO     | [monitor] control thread has ended
[2026-01-09 15:45:28] 2026-01-09 20:45:28,606 | INFO     | all workflow threads have been joined
[2026-01-09 15:45:28] 2026-01-09 20:45:28,606 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 15:45:28] 2026-01-09 20:45:28,607 | INFO     | traces error code: 0
[2026-01-09 15:45:28] 2026-01-09 20:45:28,608 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 15:45:28] 2026-01-09 20:45:28,697 [wrapper] ==== pilot stdout END ====
[2026-01-09 15:45:28] 2026-01-09 20:45:28,700 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 15:45:28] 2026-01-09 20:45:28,704 [wrapper] pilotpid: 24016
[2026-01-09 15:45:28] 2026-01-09 20:45:28,707 [wrapper] Pilot exit status: 0
[2026-01-09 15:45:28] 2026-01-09 20:45:28,724 [wrapper] pandaids: 6963191978
[2026-01-09 15:45:28] 2026-01-09 20:45:28,768 [wrapper] cleanup supervisor_pilot  9641 24017
[2026-01-09 15:45:28] 2026-01-09 20:45:28,772 [wrapper] Test setup, not cleaning
[2026-01-09 15:45:28] 2026-01-09 20:45:28,776 [wrapper] apfmon messages muted
[2026-01-09 15:45:28] 2026-01-09 20:45:28,780 [wrapper] ==== wrapper stdout END ====
[2026-01-09 15:45:28] 2026-01-09 20:45:28,783 [wrapper] ==== wrapper stderr END ====
[2026-01-09 15:45:28]  *** Error codes and diagnostics ***
[2026-01-09 15:45:28]     "exeErrorCode": 0,
[2026-01-09 15:45:28]     "exeErrorDiag": "",
[2026-01-09 15:45:28]     "pilotErrorCode": 0,
[2026-01-09 15:45:28]     "pilotErrorDiag": "",
[2026-01-09 15:45:28]  *** Listing of results directory ***
[2026-01-09 15:45:28] total 440628
[2026-01-09 15:45:28] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 15:45:28] -rwx------ 1 boincer umatlas     36322 Jan  8 23:23 runpilot2-wrapper.sh
[2026-01-09 15:45:28] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 23:24 queuedata.json
[2026-01-09 15:45:28] -rw-r--r-- 1 boincer umatlas       100 Jan  9 14:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 15:45:28] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 14:09 run_atlas
[2026-01-09 15:45:28] -rw-r--r-- 1 boincer umatlas       105 Jan  9 14:09 job.xml
[2026-01-09 15:45:28] -rw-r--r-- 2 boincer umatlas 222704907 Jan  9 14:09 EVNT.47898824._001492.pool.root.1
[2026-01-09 15:45:28] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 14:09 start_atlas.sh
[2026-01-09 15:45:28] drwxrwx--x 2 boincer umatlas      4096 Jan  9 14:09 shared
[2026-01-09 15:45:28] -rw-r--r-- 2 boincer umatlas    592397 Jan  9 14:09 input.tar.gz
[2026-01-09 15:45:28] -rw-r--r-- 1 boincer umatlas         0 Jan  9 14:09 boinc_lockfile
[2026-01-09 15:45:28] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 14:10 pandaJob.out
[2026-01-09 15:45:28] -rw------- 1 boincer umatlas        57 Jan  9 14:10 setup.sh.local
[2026-01-09 15:45:28] -rw------- 1 boincer umatlas    989372 Jan  9 14:10 agis_schedconf.cvmfs.json
[2026-01-09 15:45:28] -rw------- 1 boincer umatlas   1516240 Jan  9 14:10 agis_ddmendpoints.agis.ALL.json
[2026-01-09 15:45:28] drwx------ 5 boincer umatlas      4096 Jan  9 14:10 pilot3
[2026-01-09 15:45:28] -rw------- 1 boincer umatlas 222142773 Jan  9 15:43 HITS.47898826._038846.pool.root.1
[2026-01-09 15:45:28] -rw------- 1 boincer umatlas      1046 Jan  9 15:44 memory_monitor_summary.json
[2026-01-09 15:45:28] -rw-r--r-- 1 boincer umatlas       529 Jan  9 15:44 boinc_task_state.xml
[2026-01-09 15:45:28] -rw------- 1 boincer umatlas    409033 Jan  9 15:44 log.47898826._038846.job.log.tgz.1
[2026-01-09 15:45:28] -rw------- 1 boincer umatlas      7849 Jan  9 15:44 heartbeat.json
[2026-01-09 15:45:28] -rw------- 1 boincer umatlas        95 Jan  9 15:44 pilot_heartbeat.json
[2026-01-09 15:45:28] -rw-r--r-- 1 boincer umatlas      5952 Jan  9 15:45 init_data.xml
[2026-01-09 15:45:28] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 15:45 boinc_mmap_file
[2026-01-09 15:45:28] -rw-r--r-- 1 boincer umatlas        27 Jan  9 15:45 wrapper_checkpoint.txt
[2026-01-09 15:45:28] -rw------- 1 boincer umatlas      4746 Jan  9 15:45 pilotlog.txt
[2026-01-09 15:45:28] -rw------- 1 boincer umatlas    809512 Jan  9 15:45 log.47898826._038846.job.log.1
[2026-01-09 15:45:28] -rw------- 1 boincer umatlas       357 Jan  9 15:45 output.list
[2026-01-09 15:45:28] -rw-r--r-- 1 boincer umatlas       620 Jan  9 15:45 runtime_log
[2026-01-09 15:45:28] -rw------- 1 boincer umatlas   1239040 Jan  9 15:45 result.tar.gz
[2026-01-09 15:45:28] -rw-r--r-- 1 boincer umatlas      9344 Jan  9 15:45 runtime_log.err
[2026-01-09 15:45:28] -rw------- 1 boincer umatlas       659 Jan  9 15:45 Gn9MDmrCJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMDmKDmAbgUon.diag
[2026-01-09 15:45:28] -rw-r--r-- 1 boincer umatlas     22625 Jan  9 15:45 stderr.txt
[2026-01-09 15:45:28] HITS file was successfully produced:
[2026-01-09 15:45:28] -rw------- 1 boincer umatlas 222142773 Jan  9 15:43 shared/HITS.pool.root.1
[2026-01-09 15:45:28]  *** Contents of shared directory: ***
[2026-01-09 15:45:28] total 436240
[2026-01-09 15:45:28] -rw-r--r-- 2 boincer umatlas 222704907 Jan  9 14:09 ATLAS.root_0
[2026-01-09 15:45:28] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 14:09 start_atlas.sh
[2026-01-09 15:45:28] -rw-r--r-- 2 boincer umatlas    592397 Jan  9 14:09 input.tar.gz
[2026-01-09 15:45:28] -rw------- 1 boincer umatlas 222142773 Jan  9 15:43 HITS.pool.root.1
[2026-01-09 15:45:28] -rw------- 1 boincer umatlas   1239040 Jan  9 15:45 result.tar.gz
15:45:30 (20208): run_atlas exited; CPU time 60898.685835
15:45:30 (20208): called boinc_finish(0)

</stderr_txt>
]]>

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