Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:12:37 (28677): wrapper (7.7.26015): starting
14:12:37 (28677): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 14:12:37] Arguments: --nthreads 8
[2026-01-09 14:12:37] Threads: 8
[2026-01-09 14:12:37] Checking for CVMFS
[2026-01-09 14:12:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 14:12:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 14:12:37] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 14:12:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 14:12:37] 2.11.2.0 4697 181429 136064 154954 1 186 16538453 18432000 964 130560 0 122345340 99.979 7079969 34189 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 14:12:37] CVMFS is ok
[2026-01-09 14:12:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 14:12:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 14:12:37] Further information can be found at the LHC@home message board.
[2026-01-09 14:12:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 14:12:37] Checking for apptainer binary...
[2026-01-09 14:12:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 14:12:37] Running /usr/bin/apptainer --version
[2026-01-09 14:12:37] apptainer version 1.3.2-1.el7
[2026-01-09 14:12:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 14:12:38] c-206-21.aglt2.org
[2026-01-09 14:12:38] apptainer works
[2026-01-09 14:12:38] Set ATHENA_PROC_NUMBER=8
[2026-01-09 14:12:38] Set ATHENA_CORE_NUMBER=8
[2026-01-09 14:12:38] Starting ATLAS job with PandaID=6963189335
[2026-01-09 14:12:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 18:43:22]  *** The last 200 lines of the pilot log: ***
[2026-01-09 18:43:22] 2026-01-09 23:42:17,654 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 18:43:22] 2026-01-09 23:42:17,659 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 1718.0
[2026-01-09 18:43:22] 2026-01-09 23:42:17,663 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963189335/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 18:43:22] 2026-01-09 23:42:17,664 | INFO     | extracted standard info from prmon json
[2026-01-09 18:43:22] 2026-01-09 23:42:17,664 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 18:43:22] 2026-01-09 23:42:17,664 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 18:43:22] 2026-01-09 23:42:17,664 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 18:43:22] 2026-01-09 23:42:17,664 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 18:43:22] 2026-01-09 23:42:17,668 | INFO     | fitting pss+swap vs Time
[2026-01-09 18:43:22] 2026-01-09 23:42:17,669 | INFO     | sum of square deviations: 5770452380.0
[2026-01-09 18:43:22] 2026-01-09 23:42:17,670 | INFO     | sum of deviations: 26033942462.0
[2026-01-09 18:43:22] 2026-01-09 23:42:17,670 | INFO     | mean x: 1767994049.0
[2026-01-09 18:43:22] 2026-01-09 23:42:17,671 | INFO     | mean y: 2465536.128301887
[2026-01-09 18:43:22] 2026-01-09 23:42:17,671 | INFO     | intersect: -7974007071.869273
[2026-01-09 18:43:22] 2026-01-09 23:42:17,671 | INFO     | chi2: 2.132025738162508
[2026-01-09 18:43:22] 2026-01-09 23:42:17,671 | INFO     | sum of square deviations: 5449944045.0
[2026-01-09 18:43:22] 2026-01-09 23:42:17,673 | INFO     | sum of deviations: 43944230023.500015
[2026-01-09 18:43:22] 2026-01-09 23:42:17,673 | INFO     | mean x: 1767993896.5
[2026-01-09 18:43:22] 2026-01-09 23:42:17,673 | INFO     | mean y: 2473922.8192307693
[2026-01-09 18:43:22] 2026-01-09 23:42:17,673 | INFO     | intersect: -14253292710.091232
[2026-01-09 18:43:22] 2026-01-09 23:42:17,674 | INFO     | chi2: 1.2525681344584252
[2026-01-09 18:43:22] 2026-01-09 23:42:17,674 | INFO     | current chi2=1.2525681344584252 (change=41.249858665498365 %)
[2026-01-09 18:43:22] 2026-01-09 23:42:17,674 | INFO     | sum of square deviations: 5141528960.0
[2026-01-09 18:43:22] 2026-01-09 23:42:17,676 | INFO     | sum of deviations: 43014739747.999985
[2026-01-09 18:43:22] 2026-01-09 23:42:17,676 | INFO     | mean x: 1767993744.0
[2026-01-09 18:43:22] 2026-01-09 23:42:17,676 | INFO     | mean y: 2473463.188235294
[2026-01-09 18:43:22] 2026-01-09 23:42:17,676 | INFO     | intersect: -14788805816.94483
[2026-01-09 18:43:22] 2026-01-09 23:42:17,676 | INFO     | chi2: 1.2527097344589055
[2026-01-09 18:43:22] 2026-01-09 23:42:17,677 | INFO     | current chi2=1.2527097344589055 (change=-0.011304774294101079 %)
[2026-01-09 18:43:22] 2026-01-09 23:42:17,677 | INFO     | right removable region: 254
[2026-01-09 18:43:22] 2026-01-09 23:42:17,677 | INFO     | sum of square deviations: 5449944045.0
[2026-01-09 18:43:22] 2026-01-09 23:42:17,679 | INFO     | sum of deviations: -10608139120.0
[2026-01-09 18:43:22] 2026-01-09 23:42:17,679 | INFO     | mean x: 1767994201.5
[2026-01-09 18:43:22] 2026-01-09 23:42:17,679 | INFO     | mean y: 2482824.230769231
[2026-01-09 18:43:22] 2026-01-09 23:42:17,679 | INFO     | intersect: 3443826129.4105773
[2026-01-09 18:43:22] 2026-01-09 23:42:17,679 | INFO     | chi2: 0.9007834309487619
[2026-01-09 18:43:22] 2026-01-09 23:42:17,679 | INFO     | current chi2=0.9007834309487619 (change=57.7498800870432 %)
[2026-01-09 18:43:22] 2026-01-09 23:42:17,680 | INFO     | sum of square deviations: 5141528960.0
[2026-01-09 18:43:22] 2026-01-09 23:42:17,681 | INFO     | sum of deviations: -13245036628.0
[2026-01-09 18:43:22] 2026-01-09 23:42:17,682 | INFO     | mean x: 1767994354.0
[2026-01-09 18:43:22] 2026-01-09 23:42:17,682 | INFO     | mean y: 2484125.274509804
[2026-01-09 18:43:22] 2026-01-09 23:42:17,682 | INFO     | intersect: 4556995080.869165
[2026-01-09 18:43:22] 2026-01-09 23:42:17,682 | INFO     | chi2: 0.8971706919577686
[2026-01-09 18:43:22] 2026-01-09 23:42:17,682 | INFO     | current chi2=0.8971706919577686 (change=0.4010663236987145 %)
[2026-01-09 18:43:22] 2026-01-09 23:42:17,682 | INFO     | left removable region: 20
[2026-01-09 18:43:22] 2026-01-09 23:42:17,683 | INFO     | sum of square deviations: 3972995422.5
[2026-01-09 18:43:22] 2026-01-09 23:42:17,684 | INFO     | sum of deviations: 2472529165.0000005
[2026-01-09 18:43:22] 2026-01-09 23:42:17,684 | INFO     | mean x: 1767994323.5
[2026-01-09 18:43:22] 2026-01-09 23:42:17,684 | INFO     | mean y: 2494291.641025641
[2026-01-09 18:43:22] 2026-01-09 23:42:17,684 | INFO     | intersect: -1097788256.7988338
[2026-01-09 18:43:22] 2026-01-09 23:42:17,685 | INFO     | chi2: 0.0014745574106446843
[2026-01-09 18:43:22] 2026-01-09 23:42:17,685 | INFO     | current memory leak: 0.62 B/s (using 234 data points, chi2=0.00)
[2026-01-09 18:43:22] 2026-01-09 23:42:17,685 | INFO     | could have reported an average CPU frequency of 2365 MHz (12 samples)
[2026-01-09 18:43:22] 2026-01-09 23:42:17,685 | INFO     | ..............................
[2026-01-09 18:43:22] 2026-01-09 23:42:17,685 | INFO     | . Timing measurements:
[2026-01-09 18:43:22] 2026-01-09 23:42:17,686 | INFO     | . get job = 0 s
[2026-01-09 18:43:22] 2026-01-09 23:42:17,686 | INFO     | . initial setup = 2 s
[2026-01-09 18:43:22] 2026-01-09 23:42:17,686 | INFO     | . payload setup = 6 s
[2026-01-09 18:43:22] 2026-01-09 23:42:17,686 | INFO     | . stage-in = 0 s
[2026-01-09 18:43:22] 2026-01-09 23:42:17,686 | INFO     | . payload execution = 16134 s
[2026-01-09 18:43:22] 2026-01-09 23:42:17,686 | INFO     | . stage-out = 1 s
[2026-01-09 18:43:22] 2026-01-09 23:42:17,686 | INFO     | . log creation = 0 s
[2026-01-09 18:43:22] 2026-01-09 23:42:17,686 | INFO     | ..............................
[2026-01-09 18:43:22] 2026-01-09 23:42:17,766 | INFO     | 
[2026-01-09 18:43:22] 2026-01-09 23:42:17,766 | INFO     | job summary report
[2026-01-09 18:43:22] 2026-01-09 23:42:17,766 | INFO     | --------------------------------------------------
[2026-01-09 18:43:22] 2026-01-09 23:42:17,767 | INFO     | PanDA job id: 6963189335
[2026-01-09 18:43:22] 2026-01-09 23:42:17,767 | INFO     | task id: 47898826
[2026-01-09 18:43:22] 2026-01-09 23:42:17,767 | INFO     | errors: (none)
[2026-01-09 18:43:22] 2026-01-09 23:42:17,767 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 18:43:22] 2026-01-09 23:42:17,767 | INFO     | pilot state: finished 
[2026-01-09 18:43:22] 2026-01-09 23:42:17,767 | INFO     | transexitcode: 0
[2026-01-09 18:43:22] 2026-01-09 23:42:17,768 | INFO     | exeerrorcode: 0
[2026-01-09 18:43:22] 2026-01-09 23:42:17,768 | INFO     | exeerrordiag: 
[2026-01-09 18:43:22] 2026-01-09 23:42:17,768 | INFO     | exitcode: 0
[2026-01-09 18:43:22] 2026-01-09 23:42:17,768 | INFO     | exitmsg: OK
[2026-01-09 18:43:22] 2026-01-09 23:42:17,768 | INFO     | cpuconsumptiontime: 124229 s
[2026-01-09 18:43:22] 2026-01-09 23:42:17,768 | INFO     | nevents: 400
[2026-01-09 18:43:22] 2026-01-09 23:42:17,769 | INFO     | neventsw: 0
[2026-01-09 18:43:22] 2026-01-09 23:42:17,769 | INFO     | pid: 7011
[2026-01-09 18:43:22] 2026-01-09 23:42:17,769 | INFO     | pgrp: 7011
[2026-01-09 18:43:22] 2026-01-09 23:42:17,769 | INFO     | corecount: 8
[2026-01-09 18:43:22] 2026-01-09 23:42:17,769 | INFO     | event service: False
[2026-01-09 18:43:22] 2026-01-09 23:42:17,769 | INFO     | sizes: {0: 2283800, 1: 2283999, 5: 2284261, 11: 2284317, 16144: 2315693, 16146: 2324875, 16151: 2325013}
[2026-01-09 18:43:22] 2026-01-09 23:42:17,770 | INFO     | --------------------------------------------------
[2026-01-09 18:43:22] 2026-01-09 23:42:17,770 | INFO     | 
[2026-01-09 18:43:22] 2026-01-09 23:42:17,770 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 18:43:22] 2026-01-09 23:42:17,794 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 18:43:22] 2026-01-09 23:42:17,794 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 18:43:22] 2026-01-09 23:42:17,794 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 18:43:22] 2026-01-09 23:42:17,794 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 18:43:22] 2026-01-09 23:42:17,794 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 18:43:22] 2026-01-09 23:42:17,795 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 18:43:22] 2026-01-09 23:42:17,795 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 18:43:22] 2026-01-09 23:42:17,795 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 18:43:22] 2026-01-09 23:42:17,795 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 18:43:22] 2026-01-09 23:42:17,795 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 18:43:22] 2026-01-09 23:42:17,796 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 18:43:22] 2026-01-09 23:42:17,796 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 18:43:22] 2026-01-09 23:42:17,796 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 18:43:22] 2026-01-09 23:42:17,796 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 18:43:22] 2026-01-09 23:42:17,796 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 18:43:22] 2026-01-09 23:42:17,796 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 18:43:22] 2026-01-09 23:42:17,797 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 18:43:22] 2026-01-09 23:42:17,797 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 18:43:22] 2026-01-09 23:42:17,797 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 18:43:22] 2026-01-09 23:42:17,797 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 18:43:22] 2026-01-09 23:42:17,797 | INFO     | job 6963189335 has completed (purged errors)
[2026-01-09 18:43:22] 2026-01-09 23:42:17,798 | INFO     | overall cleanup function is called
[2026-01-09 18:43:22] 2026-01-09 23:42:18,806 | INFO     | --- collectZombieJob: --- 10, [7011]
[2026-01-09 18:43:22] 2026-01-09 23:42:18,806 | INFO     | zombie collector waiting for pid 7011
[2026-01-09 18:43:22] 2026-01-09 23:42:18,806 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 18:43:22] 2026-01-09 23:42:18,806 | INFO     | collected zombie processes
[2026-01-09 18:43:22] 2026-01-09 23:42:18,807 | INFO     | will attempt to kill all subprocesses of pid=7011
[2026-01-09 18:43:22] 2026-01-09 23:42:18,924 | INFO     | process IDs to be killed: [7011] (in reverse order)
[2026-01-09 18:43:22] 2026-01-09 23:42:18,979 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 18:43:22] 2026-01-09 23:42:18,979 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 18:43:22] 2026-01-09 23:42:18,982 | INFO     | did not find any defunct processes belonging to 7011
[2026-01-09 18:43:22] 2026-01-09 23:42:18,985 | INFO     | did not find any defunct processes belonging to 7011
[2026-01-09 18:43:22] 2026-01-09 23:42:18,985 | INFO     | ready for new job
[2026-01-09 18:43:22] 2026-01-09 23:42:18,985 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 18:43:22] 2026-01-09 23:42:18,987 | INFO     | ***************************************
[2026-01-09 18:43:22] 2026-01-09 23:42:18,987 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 18:43:22] 2026-01-09 23:42:18,987 | INFO     | ***************************************
[2026-01-09 18:43:22] 2026-01-09 23:42:18,987 | INFO     | 
[2026-01-09 18:43:22] 2026-01-09 23:42:18,988 | INFO     | architecture information:
[2026-01-09 18:43:22] 2026-01-09 23:42:18,988 | INFO     | executing command: cat /etc/os-release
[2026-01-09 18:43:22] 2026-01-09 23:42:19,004 | INFO     | cat /etc/os-release:
[2026-01-09 18:43:22] NAME="CentOS Linux"
[2026-01-09 18:43:22] VERSION="7 (Core)"
[2026-01-09 18:43:22] ID="centos"
[2026-01-09 18:43:22] ID_LIKE="rhel fedora"
[2026-01-09 18:43:22] VERSION_ID="7"
[2026-01-09 18:43:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 18:43:22] ANSI_COLOR="0;31"
[2026-01-09 18:43:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 18:43:22] HOME_URL="https://www.centos.org/"
[2026-01-09 18:43:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 18:43:22] 
[2026-01-09 18:43:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 18:43:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 18:43:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 18:43:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 18:43:22] 
[2026-01-09 18:43:22] 2026-01-09 23:42:19,004 | INFO     | ***************************************
[2026-01-09 18:43:22] 2026-01-09 23:42:19,507 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 18:43:22] 2026-01-09 23:42:19,523 | INFO     | sufficient remaining disk space (27873247232 B)
[2026-01-09 18:43:22] 2026-01-09 23:42:19,523 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 18:43:22] 2026-01-09 23:42:19,523 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 18:43:22] 2026-01-09 23:42:19,523 | INFO     | update_server=False
[2026-01-09 18:43:22] 2026-01-09 23:42:19,523 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 18:43:22] 2026-01-09 23:42:19,524 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 18:43:22] 2026-01-09 23:42:19,524 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 18:43:22] 2026-01-09 23:42:19,666 | INFO     | all data control threads have been joined
[2026-01-09 18:43:22] 2026-01-09 23:42:20,077 | INFO     | all job control threads have been joined
[2026-01-09 18:43:22] 2026-01-09 23:42:20,366 | INFO     | all payload control threads have been joined
[2026-01-09 18:43:22] 2026-01-09 23:42:20,452 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 18:43:22] 2026-01-09 23:42:20,452 | INFO     | aborting loop
[2026-01-09 18:43:22] 2026-01-09 23:42:20,529 | INFO     | [job] retrieve thread has finished
[2026-01-09 18:43:22] 2026-01-09 23:42:20,530 | INFO     | [job] queue monitor thread has finished
[2026-01-09 18:43:22] 2026-01-09 23:42:20,587 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 18:43:22] 2026-01-09 23:42:20,595 | INFO     | [data] copytool_in thread has finished
[2026-01-09 18:43:22] 2026-01-09 23:42:20,600 | INFO     | [job] validate thread has finished
[2026-01-09 18:43:22] 2026-01-09 23:42:20,631 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 18:43:22] 2026-01-09 23:42:20,672 | INFO     | [data] control thread has finished
[2026-01-09 18:43:22] 2026-01-09 23:42:20,723 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 18:43:22] 2026-01-09 23:42:20,846 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 18:43:22] 2026-01-09 23:42:21,082 | INFO     | [job] control thread has finished
[2026-01-09 18:43:22] 2026-01-09 23:42:21,352 | INFO     | [payload] failed_post thread has finished
[2026-01-09 18:43:22] 2026-01-09 23:42:21,371 | INFO     | [payload] control thread has finished
[2026-01-09 18:43:22] 2026-01-09 23:42:21,453 | INFO     | [payload] validate_post thread has finished
[2026-01-09 18:43:22] 2026-01-09 23:42:21,458 | INFO     | [job] job monitor thread has finished
[2026-01-09 18:43:22] 2026-01-09 23:42:22,852 | INFO     | [data] copytool_out thread has finished
[2026-01-09 18:43:22] 2026-01-09 23:42:23,530 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 18:43:22] 2026-01-09 23:42:30,381 | INFO     | job.realtimelogging is not enabled
[2026-01-09 18:43:22] 2026-01-09 23:42:31,386 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 18:43:22] 2026-01-09 23:42:49,089 | INFO     | PID=322 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2026-01-09 18:43:22] 2026-01-09 23:42:49,089 | INFO     | .. there are 2 such processes running
[2026-01-09 18:43:22] 2026-01-09 23:42:49,089 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 18:43:22] 2026-01-09 23:42:49,089 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 18:43:22] 2026-01-09 23:42:49,089 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 18:43:22] 2026-01-09 23:42:49,250 [wrapper] supervise_pilot (15 min periods counter: 19)
[2026-01-09 18:43:22] 2026-01-09 23:43:17,453 | INFO     | [monitor] cgroup control has ended
[2026-01-09 18:43:22] 2026-01-09 23:43:17,625 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139705452816192)>', '<ExcThread(monitor, started 139704708081408)>']
[2026-01-09 18:43:22] 2026-01-09 23:43:18,231 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 18:43:22] 2026-01-09 23:43:18,231 | INFO     | [monitor] control thread has ended
[2026-01-09 18:43:22] 2026-01-09 23:43:22,632 | INFO     | all workflow threads have been joined
[2026-01-09 18:43:22] 2026-01-09 23:43:22,632 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 18:43:22] 2026-01-09 23:43:22,632 | INFO     | traces error code: 0
[2026-01-09 18:43:22] 2026-01-09 23:43:22,632 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 18:43:22] 2026-01-09 23:43:22,715 [wrapper] ==== pilot stdout END ====
[2026-01-09 18:43:22] 2026-01-09 23:43:22,718 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 18:43:22] 2026-01-09 23:43:22,722 [wrapper] pilotpid: 322
[2026-01-09 18:43:22] 2026-01-09 23:43:22,725 [wrapper] Pilot exit status: 0
[2026-01-09 18:43:22] 2026-01-09 23:43:22,737 [wrapper] pandaids: 6963189335
[2026-01-09 18:43:22] 2026-01-09 23:43:22,776 [wrapper] cleanup supervisor_pilot 17221 323
[2026-01-09 18:43:22] 2026-01-09 23:43:22,779 [wrapper] Test setup, not cleaning
[2026-01-09 18:43:22] 2026-01-09 23:43:22,783 [wrapper] apfmon messages muted
[2026-01-09 18:43:22] 2026-01-09 23:43:22,786 [wrapper] ==== wrapper stdout END ====
[2026-01-09 18:43:22] 2026-01-09 23:43:22,790 [wrapper] ==== wrapper stderr END ====
[2026-01-09 18:43:22]  *** Error codes and diagnostics ***
[2026-01-09 18:43:22]     "exeErrorCode": 0,
[2026-01-09 18:43:22]     "exeErrorDiag": "",
[2026-01-09 18:43:22]     "pilotErrorCode": 0,
[2026-01-09 18:43:22]     "pilotErrorDiag": "",
[2026-01-09 18:43:22]  *** Listing of results directory ***
[2026-01-09 18:43:22] total 446444
[2026-01-09 18:43:22] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 23:21 queuedata.json
[2026-01-09 18:43:22] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 18:43:22] -rwx------ 1 boincer umatlas     36322 Jan  8 23:22 runpilot2-wrapper.sh
[2026-01-09 18:43:22] -rw-r--r-- 1 boincer umatlas       100 Jan  9 14:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 18:43:22] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 14:12 run_atlas
[2026-01-09 18:43:22] -rw-r--r-- 1 boincer umatlas       105 Jan  9 14:12 job.xml
[2026-01-09 18:43:22] -rw-r--r-- 2 boincer umatlas 224607447 Jan  9 14:12 EVNT.47898824._001467.pool.root.1
[2026-01-09 18:43:22] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 14:12 start_atlas.sh
[2026-01-09 18:43:22] drwxrwx--x 2 boincer umatlas      4096 Jan  9 14:12 shared
[2026-01-09 18:43:22] -rw-r--r-- 2 boincer umatlas    592391 Jan  9 14:12 input.tar.gz
[2026-01-09 18:43:22] -rw-r--r-- 1 boincer umatlas         0 Jan  9 14:12 boinc_lockfile
[2026-01-09 18:43:22] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 14:12 pandaJob.out
[2026-01-09 18:43:22] -rw------- 1 boincer umatlas        57 Jan  9 14:12 setup.sh.local
[2026-01-09 18:43:22] -rw------- 1 boincer umatlas    989372 Jan  9 14:12 agis_schedconf.cvmfs.json
[2026-01-09 18:43:22] drwx------ 5 boincer umatlas      4096 Jan  9 14:12 pilot3
[2026-01-09 18:43:22] -rw-r--r-- 1 boincer umatlas      5953 Jan  9 18:36 init_data.xml
[2026-01-09 18:43:22] -rw------- 1 boincer umatlas 223168341 Jan  9 18:41 HITS.47898826._038217.pool.root.1
[2026-01-09 18:43:22] -rw-r--r-- 1 boincer umatlas       532 Jan  9 18:41 boinc_task_state.xml
[2026-01-09 18:43:22] -rw------- 1 boincer umatlas        95 Jan  9 18:42 pilot_heartbeat.json
[2026-01-09 18:43:22] -rw------- 1 boincer umatlas      1051 Jan  9 18:42 memory_monitor_summary.json
[2026-01-09 18:43:22] -rw------- 1 boincer umatlas   1516240 Jan  9 18:42 agis_ddmendpoints.agis.ALL.json
[2026-01-09 18:43:22] -rw------- 1 boincer umatlas    496207 Jan  9 18:42 log.47898826._038217.job.log.tgz.1
[2026-01-09 18:43:22] -rw------- 1 boincer umatlas      7854 Jan  9 18:42 heartbeat.json
[2026-01-09 18:43:22] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 18:43 boinc_mmap_file
[2026-01-09 18:43:22] -rw-r--r-- 1 boincer umatlas        29 Jan  9 18:43 wrapper_checkpoint.txt
[2026-01-09 18:43:22] -rw------- 1 boincer umatlas      4891 Jan  9 18:43 pilotlog.txt
[2026-01-09 18:43:22] -rw------- 1 boincer umatlas   2235294 Jan  9 18:43 log.47898826._038217.job.log.1
[2026-01-09 18:43:22] -rw------- 1 boincer umatlas       357 Jan  9 18:43 output.list
[2026-01-09 18:43:22] -rw-r--r-- 1 boincer umatlas       620 Jan  9 18:43 runtime_log
[2026-01-09 18:43:22] -rw------- 1 boincer umatlas   2754560 Jan  9 18:43 result.tar.gz
[2026-01-09 18:43:22] -rw------- 1 boincer umatlas       662 Jan  9 18:43 WbKLDmECJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrugKDmxOgrrm.diag
[2026-01-09 18:43:22] -rw-r--r-- 1 boincer umatlas      9343 Jan  9 18:43 runtime_log.err
[2026-01-09 18:43:22] -rw-r--r-- 1 boincer umatlas     20993 Jan  9 18:43 stderr.txt
[2026-01-09 18:43:22] HITS file was successfully produced:
[2026-01-09 18:43:22] -rw------- 1 boincer umatlas 223168341 Jan  9 18:41 shared/HITS.pool.root.1
[2026-01-09 18:43:22]  *** Contents of shared directory: ***
[2026-01-09 18:43:22] total 440576
[2026-01-09 18:43:22] -rw-r--r-- 2 boincer umatlas 224607447 Jan  9 14:12 ATLAS.root_0
[2026-01-09 18:43:22] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 14:12 start_atlas.sh
[2026-01-09 18:43:22] -rw-r--r-- 2 boincer umatlas    592391 Jan  9 14:12 input.tar.gz
[2026-01-09 18:43:22] -rw------- 1 boincer umatlas 223168341 Jan  9 18:41 HITS.pool.root.1
[2026-01-09 18:43:22] -rw------- 1 boincer umatlas   2754560 Jan  9 18:43 result.tar.gz
18:43:24 (28677): run_atlas exited; CPU time 124475.026788
18:43:24 (28677): called boinc_finish(0)

</stderr_txt>
]]>

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