Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:07:32 (995261): wrapper (7.7.26015): starting
21:07:32 (995261): wrapper: running run_atlas (--nthreads 6)
[2026-01-10 21:07:32] Arguments: --nthreads 6
[2026-01-10 21:07:32] Threads: 6
[2026-01-10 21:07:32] Checking for CVMFS
[2026-01-10 21:07:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 21:07:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 21:07:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 21:07:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 21:07:33] 2.13.3.0 123159 2603 80836 154978 1 57 39229522 52428801 922 130560 0 2800885 99.992 90749 121 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-10 21:07:33] CVMFS is ok
[2026-01-10 21:07:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 21:07:33] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-10 21:07:33] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-10 21:07:33] Further information can be found at the LHC@home message board.
[2026-01-10 21:07:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 21:07:33] Checking for apptainer binary...
[2026-01-10 21:07:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 21:07:33] Running /usr/bin/apptainer --version
[2026-01-10 21:07:33] apptainer version 1.4.5-2.el9
[2026-01-10 21:07:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 21:07:33] Atto003
[2026-01-10 21:07:33] apptainer works
[2026-01-10 21:07:33] Set ATHENA_PROC_NUMBER=6
[2026-01-10 21:07:33] Set ATHENA_CORE_NUMBER=6
[2026-01-10 21:07:33] Starting ATLAS job with PandaID=6963189586
[2026-01-10 21:07:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 23:32:04]  *** The last 200 lines of the pilot log: ***
[2026-01-10 23:32:04] 2026-01-10 14:31:03,206 | INFO     | time since job start (8599s) is within the limit (349056.0s)
[2026-01-10 23:32:04] 2026-01-10 14:31:03,544 | INFO     | monitor loop #652: job 0:6963189586 is in state 'finished'
[2026-01-10 23:32:04] 2026-01-10 14:31:03,544 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 23:32:04] 2026-01-10 14:31:05,211 | INFO     | time since job start (8601s) is within the limit (349056.0s)
[2026-01-10 23:32:04] 2026-01-10 14:31:06,047 | INFO     | monitor loop #653: job 0:6963189586 is in state 'finished'
[2026-01-10 23:32:04] 2026-01-10 14:31:06,047 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 23:32:04] 2026-01-10 14:31:07,217 | INFO     | time since job start (8603s) is within the limit (349056.0s)
[2026-01-10 23:32:04] 2026-01-10 14:31:07,845 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 23:32:04] 2026-01-10 14:31:07,847 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3400.0931875000006
[2026-01-10 23:32:04] 2026-01-10 14:31:07,850 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6963189586/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 23:32:04] 2026-01-10 14:31:07,850 | INFO     | extracted standard info from prmon json
[2026-01-10 23:32:04] 2026-01-10 14:31:07,851 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 23:32:04] 2026-01-10 14:31:07,851 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 23:32:04] 2026-01-10 14:31:07,851 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 23:32:04] 2026-01-10 14:31:07,851 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 23:32:04] 2026-01-10 14:31:07,853 | INFO     | fitting pss+swap vs Time
[2026-01-10 23:32:04] 2026-01-10 14:31:07,853 | INFO     | sum of square deviations: 869188390.0
[2026-01-10 23:32:04] 2026-01-10 14:31:07,854 | INFO     | sum of deviations: 13302268170.0
[2026-01-10 23:32:04] 2026-01-10 14:31:07,854 | INFO     | mean x: 1768051159.0
[2026-01-10 23:32:04] 2026-01-10 14:31:07,854 | INFO     | mean y: 2432448.7730496456
[2026-01-10 23:32:04] 2026-01-10 14:31:07,854 | INFO     | intersect: -27056247724.45995
[2026-01-10 23:32:04] 2026-01-10 14:31:07,855 | INFO     | chi2: 3.2284786704106447
[2026-01-10 23:32:04] 2026-01-10 14:31:07,855 | INFO     | sum of square deviations: 779958810.0
[2026-01-10 23:32:04] 2026-01-10 14:31:07,855 | INFO     | sum of deviations: 21699983504.500004
[2026-01-10 23:32:04] 2026-01-10 14:31:07,855 | INFO     | mean x: 1768051006.5
[2026-01-10 23:32:04] 2026-01-10 14:31:07,856 | INFO     | mean y: 2446384.330882353
[2026-01-10 23:32:04] 2026-01-10 14:31:07,856 | INFO     | intersect: -49188199562.93989
[2026-01-10 23:32:04] 2026-01-10 14:31:07,856 | INFO     | chi2: 2.576536526813925
[2026-01-10 23:32:04] 2026-01-10 14:31:07,856 | INFO     | current chi2=2.576536526813925 (change=20.193478419784526 %)
[2026-01-10 23:32:04] 2026-01-10 14:31:07,856 | INFO     | right removable region: 135
[2026-01-10 23:32:04] 2026-01-10 14:31:07,856 | INFO     | sum of square deviations: 779958810.0
[2026-01-10 23:32:04] 2026-01-10 14:31:07,857 | INFO     | sum of deviations: -20395001568.0
[2026-01-10 23:32:04] 2026-01-10 14:31:07,857 | INFO     | mean x: 1768051311.5
[2026-01-10 23:32:04] 2026-01-10 14:31:07,857 | INFO     | mean y: 2489780.7647058824
[2026-01-10 23:32:04] 2026-01-10 14:31:07,857 | INFO     | intersect: 46234943094.994156
[2026-01-10 23:32:04] 2026-01-10 14:31:07,857 | INFO     | chi2: 0.7968679777517116
[2026-01-10 23:32:04] 2026-01-10 14:31:07,857 | INFO     | current chi2=0.7968679777517116 (change=75.31753933965577 %)
[2026-01-10 23:32:04] 2026-01-10 14:31:07,858 | INFO     | sum of square deviations: 697054930.0
[2026-01-10 23:32:04] 2026-01-10 14:31:07,858 | INFO     | sum of deviations: -23380118674.000004
[2026-01-10 23:32:04] 2026-01-10 14:31:07,858 | INFO     | mean x: 1768051464.0
[2026-01-10 23:32:04] 2026-01-10 14:31:07,858 | INFO     | mean y: 2495107.5038167937
[2026-01-10 23:32:04] 2026-01-10 14:31:07,858 | INFO     | intersect: 59305214693.83461
[2026-01-10 23:32:04] 2026-01-10 14:31:07,859 | INFO     | chi2: 0.7124874787895662
[2026-01-10 23:32:04] 2026-01-10 14:31:07,859 | INFO     | current chi2=0.7124874787895662 (change=10.589018672856836 %)
[2026-01-10 23:32:04] 2026-01-10 14:31:07,859 | INFO     | left removable region: 20
[2026-01-10 23:32:04] 2026-01-10 14:31:07,859 | INFO     | sum of square deviations: 471562330.0
[2026-01-10 23:32:04] 2026-01-10 14:31:07,859 | INFO     | sum of deviations: -12405994804.0
[2026-01-10 23:32:04] 2026-01-10 14:31:07,860 | INFO     | mean x: 1768051586.0
[2026-01-10 23:32:04] 2026-01-10 14:31:07,860 | INFO     | mean y: 2509158.0173913045
[2026-01-10 23:32:04] 2026-01-10 14:31:07,860 | INFO     | intersect: 46516909044.70885
[2026-01-10 23:32:04] 2026-01-10 14:31:07,860 | INFO     | chi2: 0.020419965824633398
[2026-01-10 23:32:04] 2026-01-10 14:31:07,860 | INFO     | current memory leak: -26.31 B/s (using 115 data points, chi2=0.02)
[2026-01-10 23:32:04] 2026-01-10 14:31:07,860 | INFO     | could have reported an average CPU frequency of 3475 MHz (8 samples)
[2026-01-10 23:32:04] 2026-01-10 14:31:07,861 | INFO     | ..............................
[2026-01-10 23:32:04] 2026-01-10 14:31:07,861 | INFO     | . Timing measurements:
[2026-01-10 23:32:04] 2026-01-10 14:31:07,861 | INFO     | . get job = 0 s
[2026-01-10 23:32:04] 2026-01-10 14:31:07,861 | INFO     | . initial setup = 6 s
[2026-01-10 23:32:04] 2026-01-10 14:31:07,861 | INFO     | . payload setup = 5 s
[2026-01-10 23:32:04] 2026-01-10 14:31:07,861 | INFO     | . stage-in = 0 s
[2026-01-10 23:32:04] 2026-01-10 14:31:07,861 | INFO     | . payload execution = 8559 s
[2026-01-10 23:32:04] 2026-01-10 14:31:07,861 | INFO     | . stage-out = 0 s
[2026-01-10 23:32:04] 2026-01-10 14:31:07,861 | INFO     | . log creation = 0 s
[2026-01-10 23:32:04] 2026-01-10 14:31:07,861 | INFO     | ..............................
[2026-01-10 23:32:04] 2026-01-10 14:31:07,932 | INFO     | 
[2026-01-10 23:32:04] 2026-01-10 14:31:07,932 | INFO     | job summary report
[2026-01-10 23:32:04] 2026-01-10 14:31:07,932 | INFO     | --------------------------------------------------
[2026-01-10 23:32:04] 2026-01-10 14:31:07,932 | INFO     | PanDA job id: 6963189586
[2026-01-10 23:32:04] 2026-01-10 14:31:07,932 | INFO     | task id: 47898826
[2026-01-10 23:32:04] 2026-01-10 14:31:07,932 | INFO     | errors: (none)
[2026-01-10 23:32:04] 2026-01-10 14:31:07,932 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 23:32:04] 2026-01-10 14:31:07,932 | INFO     | pilot state: finished 
[2026-01-10 23:32:04] 2026-01-10 14:31:07,932 | INFO     | transexitcode: 0
[2026-01-10 23:32:04] 2026-01-10 14:31:07,933 | INFO     | exeerrorcode: 0
[2026-01-10 23:32:04] 2026-01-10 14:31:07,933 | INFO     | exeerrordiag: 
[2026-01-10 23:32:04] 2026-01-10 14:31:07,933 | INFO     | exitcode: 0
[2026-01-10 23:32:04] 2026-01-10 14:31:07,933 | INFO     | exitmsg: OK
[2026-01-10 23:32:04] 2026-01-10 14:31:07,933 | INFO     | cpuconsumptiontime: 48507 s
[2026-01-10 23:32:04] 2026-01-10 14:31:07,933 | INFO     | nevents: 400
[2026-01-10 23:32:04] 2026-01-10 14:31:07,933 | INFO     | neventsw: 0
[2026-01-10 23:32:04] 2026-01-10 14:31:07,933 | INFO     | pid: 1007889
[2026-01-10 23:32:04] 2026-01-10 14:31:07,933 | INFO     | pgrp: 1007889
[2026-01-10 23:32:04] 2026-01-10 14:31:07,933 | INFO     | corecount: 6
[2026-01-10 23:32:04] 2026-01-10 14:31:07,933 | INFO     | event service: False
[2026-01-10 23:32:04] 2026-01-10 14:31:07,933 | INFO     | sizes: {0: 2283800, 1: 2283999, 5: 2284261, 11: 2284317, 8568: 2312334, 8569: 2321516, 8588: 2321654}
[2026-01-10 23:32:04] 2026-01-10 14:31:07,933 | INFO     | --------------------------------------------------
[2026-01-10 23:32:04] 2026-01-10 14:31:07,933 | INFO     | 
[2026-01-10 23:32:04] 2026-01-10 14:31:07,934 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2026-01-10 23:32:04] 2026-01-10 14:31:07,949 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 23:32:04] 2026-01-10 14:31:07,949 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 23:32:04] 2026-01-10 14:31:07,949 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 23:32:04] 2026-01-10 14:31:07,949 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 23:32:04] 2026-01-10 14:31:07,949 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 23:32:04] 2026-01-10 14:31:07,950 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 23:32:04] 2026-01-10 14:31:07,950 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 23:32:04] 2026-01-10 14:31:07,950 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 23:32:04] 2026-01-10 14:31:07,950 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 23:32:04] 2026-01-10 14:31:07,950 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 23:32:04] 2026-01-10 14:31:07,950 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 23:32:04] 2026-01-10 14:31:07,950 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 23:32:04] 2026-01-10 14:31:07,950 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 23:32:04] 2026-01-10 14:31:07,950 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 23:32:04] 2026-01-10 14:31:07,950 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 23:32:04] 2026-01-10 14:31:07,950 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 23:32:04] 2026-01-10 14:31:07,950 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 23:32:04] 2026-01-10 14:31:07,951 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 23:32:04] 2026-01-10 14:31:07,951 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 23:32:04] 2026-01-10 14:31:07,951 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 23:32:04] 2026-01-10 14:31:07,951 | INFO     | job 6963189586 has completed (purged errors)
[2026-01-10 23:32:04] 2026-01-10 14:31:07,951 | INFO     | overall cleanup function is called
[2026-01-10 23:32:04] 2026-01-10 14:31:08,316 | INFO     | PID=999795 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 23:32:04] 2026-01-10 14:31:08,316 | INFO     | .. there are 2 such processes running
[2026-01-10 23:32:04] 2026-01-10 14:31:08,957 | INFO     | --- collectZombieJob: --- 10, [1007889]
[2026-01-10 23:32:04] 2026-01-10 14:31:08,957 | INFO     | zombie collector waiting for pid 1007889
[2026-01-10 23:32:04] 2026-01-10 14:31:08,957 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 23:32:04] 2026-01-10 14:31:08,957 | INFO     | collected zombie processes
[2026-01-10 23:32:04] 2026-01-10 14:31:08,957 | INFO     | will attempt to kill all subprocesses of pid=1007889
[2026-01-10 23:32:04] 2026-01-10 14:31:09,037 | INFO     | process IDs to be killed: [1007889] (in reverse order)
[2026-01-10 23:32:04] 2026-01-10 14:31:09,069 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 23:32:04] 2026-01-10 14:31:09,069 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 23:32:04] 2026-01-10 14:31:09,072 | INFO     | did not find any defunct processes belonging to 1007889
[2026-01-10 23:32:04] 2026-01-10 14:31:09,074 | INFO     | did not find any defunct processes belonging to 1007889
[2026-01-10 23:32:04] 2026-01-10 14:31:09,075 | INFO     | ready for new job
[2026-01-10 23:32:04] 2026-01-10 14:31:09,075 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 23:32:04] 2026-01-10 14:31:09,076 | INFO     | ***************************************
[2026-01-10 23:32:04] 2026-01-10 14:31:09,076 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 23:32:04] 2026-01-10 14:31:09,076 | INFO     | ***************************************
[2026-01-10 23:32:04] 2026-01-10 14:31:09,076 | INFO     | 
[2026-01-10 23:32:04] 2026-01-10 14:31:09,077 | INFO     | architecture information:
[2026-01-10 23:32:04] 2026-01-10 14:31:09,077 | INFO     | executing command: cat /etc/os-release
[2026-01-10 23:32:04] 2026-01-10 14:31:09,085 | INFO     | cat /etc/os-release:
[2026-01-10 23:32:04] NAME="CentOS Linux"
[2026-01-10 23:32:04] VERSION="7 (Core)"
[2026-01-10 23:32:04] ID="centos"
[2026-01-10 23:32:04] ID_LIKE="rhel fedora"
[2026-01-10 23:32:04] VERSION_ID="7"
[2026-01-10 23:32:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 23:32:04] ANSI_COLOR="0;31"
[2026-01-10 23:32:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 23:32:04] HOME_URL="https://www.centos.org/"
[2026-01-10 23:32:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 23:32:04] 
[2026-01-10 23:32:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 23:32:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 23:32:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 23:32:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 23:32:04] 
[2026-01-10 23:32:04] 2026-01-10 14:31:09,086 | INFO     | ***************************************
[2026-01-10 23:32:04] 2026-01-10 14:31:09,588 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2026-01-10 23:32:04] 2026-01-10 14:31:09,602 | INFO     | sufficient remaining disk space (97516519424 B)
[2026-01-10 23:32:04] 2026-01-10 14:31:09,602 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 23:32:04] 2026-01-10 14:31:09,602 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 23:32:04] 2026-01-10 14:31:09,602 | INFO     | update_server=False
[2026-01-10 23:32:04] 2026-01-10 14:31:09,602 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 23:32:04] 2026-01-10 14:31:09,602 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 23:32:04] 2026-01-10 14:31:09,603 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 23:32:04] 2026-01-10 14:31:09,603 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 23:32:04] 2026-01-10 14:31:09,603 | INFO     | aborting loop
[2026-01-10 23:32:04] 2026-01-10 14:31:10,139 | INFO     | all payload control threads have been joined
[2026-01-10 23:32:04] 2026-01-10 14:31:10,390 | INFO     | all data control threads have been joined
[2026-01-10 23:32:04] 2026-01-10 14:31:10,607 | INFO     | [job] retrieve thread has finished
[2026-01-10 23:32:04] 2026-01-10 14:31:10,608 | INFO     | [job] queue monitor thread has finished
[2026-01-10 23:32:04] 2026-01-10 14:31:10,608 | INFO     | [job] job monitor thread has finished
[2026-01-10 23:32:04] 2026-01-10 14:31:10,663 | INFO     | all job control threads have been joined
[2026-01-10 23:32:04] 2026-01-10 14:31:10,680 | INFO     | [data] copytool_in thread has finished
[2026-01-10 23:32:04] 2026-01-10 14:31:10,735 | INFO     | [payload] failed_post thread has finished
[2026-01-10 23:32:04] 2026-01-10 14:31:10,767 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 23:32:04] 2026-01-10 14:31:11,144 | INFO     | [payload] control thread has finished
[2026-01-10 23:32:04] 2026-01-10 14:31:11,214 | INFO     | [payload] validate_post thread has finished
[2026-01-10 23:32:04] 2026-01-10 14:31:11,231 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 23:32:04] 2026-01-10 14:31:11,395 | INFO     | [data] control thread has finished
[2026-01-10 23:32:04] 2026-01-10 14:31:11,500 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 23:32:04] 2026-01-10 14:31:11,608 | INFO     | [data] copytool_out thread has finished
[2026-01-10 23:32:04] 2026-01-10 14:31:11,669 | INFO     | [job] control thread has finished
[2026-01-10 23:32:04] 2026-01-10 14:31:11,802 | INFO     | [job] validate thread has finished
[2026-01-10 23:32:04] 2026-01-10 14:31:11,932 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 23:32:04] 2026-01-10 14:31:12,499 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 23:32:04] 2026-01-10 14:31:16,505 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 23:32:04] 2026-01-10 14:31:40,438 | INFO     | PID=999795 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 23:32:04] 2026-01-10 14:31:40,438 | INFO     | .. there are 2 such processes running
[2026-01-10 23:32:04] 2026-01-10 14:31:40,438 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 23:32:04] 2026-01-10 14:31:40,438 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 23:32:04] 2026-01-10 14:31:40,438 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 23:32:04] 2026-01-10 14:31:58,869 | INFO     | [monitor] cgroup control has ended
[2026-01-10 23:32:04] 2026-01-10 14:31:59,749 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140512390076224)>', '<ExcThread(monitor, started 140512027715328)>']
[2026-01-10 23:32:04] 2026-01-10 14:32:00,538 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 23:32:04] 2026-01-10 14:32:00,538 | INFO     | [monitor] control thread has ended
[2026-01-10 23:32:04] 2026-01-10 14:32:04,756 | INFO     | all workflow threads have been joined
[2026-01-10 23:32:04] 2026-01-10 14:32:04,756 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 23:32:04] 2026-01-10 14:32:04,757 | INFO     | traces error code: 0
[2026-01-10 23:32:04] 2026-01-10 14:32:04,757 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 23:32:04] 2026-01-10 14:32:04,836 [wrapper] ==== pilot stdout END ====
[2026-01-10 23:32:04] 2026-01-10 14:32:04,838 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 23:32:04] 2026-01-10 14:32:04,840 [wrapper] pilotpid: 999795
[2026-01-10 23:32:04] 2026-01-10 14:32:04,841 [wrapper] Pilot exit status: 0
[2026-01-10 23:32:04] 2026-01-10 14:32:04,847 [wrapper] pandaids: 6963189586
[2026-01-10 23:32:04] 2026-01-10 14:32:04,865 [wrapper] cleanup supervisor_pilot 1050913 999796
[2026-01-10 23:32:04] 2026-01-10 14:32:04,866 [wrapper] Test setup, not cleaning
[2026-01-10 23:32:04] 2026-01-10 14:32:04,868 [wrapper] apfmon messages muted
[2026-01-10 23:32:04] 2026-01-10 14:32:04,869 [wrapper] ==== wrapper stdout END ====
[2026-01-10 23:32:04] 2026-01-10 14:32:04,871 [wrapper] ==== wrapper stderr END ====
[2026-01-10 23:32:04]  *** Error codes and diagnostics ***
[2026-01-10 23:32:04]     "exeErrorCode": 0,
[2026-01-10 23:32:04]     "exeErrorDiag": "",
[2026-01-10 23:32:04]     "pilotErrorCode": 0,
[2026-01-10 23:32:04]     "pilotErrorDiag": "",
[2026-01-10 23:32:04]  *** Listing of results directory ***
[2026-01-10 23:32:04] total 448776
[2026-01-10 23:32:04] -rw-r--r--. 1 boinc boinc    579449 Jan  9 13:21 pilot3.tar.gz
[2026-01-10 23:32:04] -rwx------. 1 boinc boinc     36322 Jan  9 13:22 runpilot2-wrapper.sh
[2026-01-10 23:32:04] -rw-r--r--. 1 boinc boinc      5112 Jan  9 13:24 queuedata.json
[2026-01-10 23:32:04] -rw-r--r--. 1 boinc boinc       100 Jan 10 21:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 23:32:04] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 21:07 run_atlas
[2026-01-10 23:32:04] -rw-r--r--. 1 boinc boinc       105 Jan 10 21:07 job.xml
[2026-01-10 23:32:04] -rw-r--r--. 1 boinc boinc      9344 Jan 10 21:07 init_data.xml
[2026-01-10 23:32:04] -rw-r--r--. 2 boinc boinc 225915674 Jan 10 21:07 EVNT.47898824._001477.pool.root.1
[2026-01-10 23:32:04] -rw-r--r--. 2 boinc boinc     15847 Jan 10 21:07 start_atlas.sh
[2026-01-10 23:32:04] drwxrwx--x. 2 boinc boinc        68 Jan 10 21:07 shared
[2026-01-10 23:32:04] -rw-r--r--. 2 boinc boinc    592404 Jan 10 21:07 input.tar.gz
[2026-01-10 23:32:04] -rw-r--r--. 1 boinc boinc         0 Jan 10 21:07 boinc_lockfile
[2026-01-10 23:32:04] -rw-r--r--. 1 boinc boinc      2520 Jan 10 21:07 pandaJob.out
[2026-01-10 23:32:04] -rw-------. 1 boinc boinc    989564 Jan 10 21:07 agis_schedconf.cvmfs.json
[2026-01-10 23:32:04] -rw-------. 1 boinc boinc   1516240 Jan 10 21:07 agis_ddmendpoints.agis.ALL.json
[2026-01-10 23:32:04] drwx------. 5 boinc boinc      4096 Jan 10 21:07 pilot3
[2026-01-10 23:32:04] -rw-------. 1 boinc boinc 226531632 Jan 10 23:30 HITS.47898826._038455.pool.root.1
[2026-01-10 23:32:04] -rw-r--r--. 1 boinc boinc       529 Jan 10 23:30 boinc_task_state.xml
[2026-01-10 23:32:04] -rw-------. 1 boinc boinc      1018 Jan 10 23:30 memory_monitor_summary.json
[2026-01-10 23:32:04] -rw-------. 1 boinc boinc        95 Jan 10 23:30 pilot_heartbeat.json
[2026-01-10 23:32:04] -rw-------. 1 boinc boinc    344422 Jan 10 23:30 log.47898826._038455.job.log.tgz.1
[2026-01-10 23:32:04] -rw-------. 1 boinc boinc      7769 Jan 10 23:31 heartbeat.json
[2026-01-10 23:32:04] -rw-r--r--. 1 boinc boinc        27 Jan 10 23:31 wrapper_checkpoint.txt
[2026-01-10 23:32:04] -rw-r--r--. 1 boinc boinc      8192 Jan 10 23:31 boinc_mmap_file
[2026-01-10 23:32:04] -rw-------. 1 boinc boinc      4822 Jan 10 23:32 pilotlog.txt
[2026-01-10 23:32:04] -rw-------. 1 boinc boinc   1250599 Jan 10 23:32 log.47898826._038455.job.log.1
[2026-01-10 23:32:04] -rw-------. 1 boinc boinc       357 Jan 10 23:32 output.list
[2026-01-10 23:32:04] -rw-r--r--. 1 boinc boinc       620 Jan 10 23:32 runtime_log
[2026-01-10 23:32:04] -rw-------. 1 boinc boinc   1617920 Jan 10 23:32 result.tar.gz
[2026-01-10 23:32:04] -rw-------. 1 boinc boinc       641 Jan 10 23:32 Tf9MDmeCJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJygKDm02jmWm.diag
[2026-01-10 23:32:04] -rw-r--r--. 1 boinc boinc      8765 Jan 10 23:32 runtime_log.err
[2026-01-10 23:32:04] -rw-r--r--. 1 boinc boinc     21425 Jan 10 23:32 stderr.txt
[2026-01-10 23:32:04] HITS file was successfully produced:
[2026-01-10 23:32:04] -rw-------. 1 boinc boinc 226531632 Jan 10 23:30 shared/HITS.pool.root.1
[2026-01-10 23:32:04]  *** Contents of shared directory: ***
[2026-01-10 23:32:04] total 444024
[2026-01-10 23:32:04] -rw-r--r--. 2 boinc boinc 225915674 Jan 10 21:07 ATLAS.root_0
[2026-01-10 23:32:04] -rw-r--r--. 2 boinc boinc     15847 Jan 10 21:07 start_atlas.sh
[2026-01-10 23:32:04] -rw-r--r--. 2 boinc boinc    592404 Jan 10 21:07 input.tar.gz
[2026-01-10 23:32:04] -rw-------. 1 boinc boinc 226531632 Jan 10 23:30 HITS.pool.root.1
[2026-01-10 23:32:04] -rw-------. 1 boinc boinc   1617920 Jan 10 23:32 result.tar.gz
23:32:06 (995261): run_atlas exited; CPU time 48601.358269
23:32:06 (995261): called boinc_finish(0)

</stderr_txt>
]]>

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