Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:20:03 (18321): wrapper (7.7.26015): starting
14:20:03 (18321): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 14:20:03] Arguments: --nthreads 8
[2026-01-09 14:20:03] Threads: 8
[2026-01-09 14:20:03] Checking for CVMFS
[2026-01-09 14:20:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 14:20:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 14:20:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 14:20:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 14:20:03] 2.11.2.0 2873 124171 88592 154955 3 56 16871014 20275200 1 130560 0 30894759 99.838 7319655 35784 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 14:20:03] CVMFS is ok
[2026-01-09 14:20:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 14:20:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 14:20:03] Further information can be found at the LHC@home message board.
[2026-01-09 14:20:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 14:20:03] Checking for apptainer binary...
[2026-01-09 14:20:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 14:20:03] Running /usr/bin/apptainer --version
[2026-01-09 14:20:03] apptainer version 1.3.2-1.el7
[2026-01-09 14:20:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 14:20:05] c-115-13.aglt2.org
[2026-01-09 14:20:05] apptainer works
[2026-01-09 14:20:05] Set ATHENA_PROC_NUMBER=8
[2026-01-09 14:20:05] Set ATHENA_CORE_NUMBER=8
[2026-01-09 14:20:05] Starting ATLAS job with PandaID=6963192125
[2026-01-09 14:20:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 16:59:46]  *** The last 200 lines of the pilot log: ***
[2026-01-09 16:59:46] 2026-01-09 21:59:08,149 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 16:59:46] 2026-01-09 21:59:09,211 | INFO     | time since job start (9527s) is within the limit (349056.0s)
[2026-01-09 16:59:46] 2026-01-09 21:59:10,652 | INFO     | monitor loop #702: job 0:6963192125 is in state 'finished'
[2026-01-09 16:59:46] 2026-01-09 21:59:10,652 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 16:59:46] 2026-01-09 21:59:11,216 | INFO     | time since job start (9529s) is within the limit (349056.0s)
[2026-01-09 16:59:46] 2026-01-09 21:59:13,155 | INFO     | monitor loop #703: job 0:6963192125 is in state 'finished'
[2026-01-09 16:59:46] 2026-01-09 21:59:13,156 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 16:59:46] 2026-01-09 21:59:13,221 | INFO     | time since job start (9531s) is within the limit (349056.0s)
[2026-01-09 16:59:46] 2026-01-09 21:59:13,493 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 16:59:46] 2026-01-09 21:59:13,498 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1828.875
[2026-01-09 16:59:46] 2026-01-09 21:59:13,500 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963192125/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 16:59:46] 2026-01-09 21:59:13,501 | INFO     | extracted standard info from prmon json
[2026-01-09 16:59:46] 2026-01-09 21:59:13,502 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 16:59:46] 2026-01-09 21:59:13,502 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 16:59:46] 2026-01-09 21:59:13,503 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 16:59:46] 2026-01-09 21:59:13,503 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 16:59:46] 2026-01-09 21:59:13,506 | INFO     | fitting pss+swap vs Time
[2026-01-09 16:59:46] 2026-01-09 21:59:13,507 | INFO     | sum of square deviations: 1177156955.0
[2026-01-09 16:59:46] 2026-01-09 21:59:13,507 | INFO     | sum of deviations: -15131225466.5
[2026-01-09 16:59:46] 2026-01-09 21:59:13,508 | INFO     | mean x: 1767991179.5
[2026-01-09 16:59:46] 2026-01-09 21:59:13,508 | INFO     | mean y: 2576690.3012820515
[2026-01-09 16:59:46] 2026-01-09 21:59:13,508 | INFO     | intersect: 22728410357.739258
[2026-01-09 16:59:46] 2026-01-09 21:59:13,508 | INFO     | chi2: 1.5853617876699717
[2026-01-09 16:59:46] 2026-01-09 21:59:13,509 | INFO     | sum of square deviations: 1067554900.0
[2026-01-09 16:59:46] 2026-01-09 21:59:13,509 | INFO     | sum of deviations: -14003380759.0
[2026-01-09 16:59:46] 2026-01-09 21:59:13,510 | INFO     | mean x: 1767991027.0
[2026-01-09 16:59:46] 2026-01-09 21:59:13,510 | INFO     | mean y: 2578260.7748344373
[2026-01-09 16:59:46] 2026-01-09 21:59:13,510 | INFO     | intersect: 23193752344.258923
[2026-01-09 16:59:46] 2026-01-09 21:59:13,510 | INFO     | chi2: 1.5843447826406656
[2026-01-09 16:59:46] 2026-01-09 21:59:13,510 | INFO     | current chi2=1.5843447826406656 (change=0.06414971252718503 %)
[2026-01-09 16:59:46] 2026-01-09 21:59:13,510 | INFO     | right removable region: 150
[2026-01-09 16:59:46] 2026-01-09 21:59:13,511 | INFO     | sum of square deviations: 1067554900.0
[2026-01-09 16:59:46] 2026-01-09 21:59:13,512 | INFO     | sum of deviations: -38280254516.0
[2026-01-09 16:59:46] 2026-01-09 21:59:13,512 | INFO     | mean x: 1767991332.0
[2026-01-09 16:59:46] 2026-01-09 21:59:13,512 | INFO     | mean y: 2608420.437086093
[2026-01-09 16:59:46] 2026-01-09 21:59:13,512 | INFO     | intersect: 63399027818.67306
[2026-01-09 16:59:46] 2026-01-09 21:59:13,512 | INFO     | chi2: 0.15567465518419796
[2026-01-09 16:59:46] 2026-01-09 21:59:13,512 | INFO     | current chi2=0.15567465518419796 (change=90.18049656583467 %)
[2026-01-09 16:59:46] 2026-01-09 21:59:13,513 | INFO     | sum of square deviations: 964976232.5
[2026-01-09 16:59:46] 2026-01-09 21:59:13,513 | INFO     | sum of deviations: -36980489177.5
[2026-01-09 16:59:46] 2026-01-09 21:59:13,513 | INFO     | mean x: 1767991484.5
[2026-01-09 16:59:46] 2026-01-09 21:59:13,514 | INFO     | mean y: 2606424.3630136987
[2026-01-09 16:59:46] 2026-01-09 21:59:13,514 | INFO     | intersect: 67756803633.01231
[2026-01-09 16:59:46] 2026-01-09 21:59:13,514 | INFO     | chi2: 0.1388788406206644
[2026-01-09 16:59:46] 2026-01-09 21:59:13,514 | INFO     | current chi2=0.1388788406206644 (change=10.789048829856304 %)
[2026-01-09 16:59:46] 2026-01-09 21:59:13,514 | INFO     | left removable region: 20
[2026-01-09 16:59:46] 2026-01-09 21:59:13,515 | INFO     | sum of square deviations: 681212772.5
[2026-01-09 16:59:46] 2026-01-09 21:59:13,515 | INFO     | sum of deviations: -27904020895.499992
[2026-01-09 16:59:46] 2026-01-09 21:59:13,515 | INFO     | mean x: 1767991606.5
[2026-01-09 16:59:46] 2026-01-09 21:59:13,515 | INFO     | mean y: 2597114.207692308
[2026-01-09 16:59:46] 2026-01-09 21:59:13,515 | INFO     | intersect: 72423545050.62442
[2026-01-09 16:59:46] 2026-01-09 21:59:13,516 | INFO     | chi2: 0.13089196267456937
[2026-01-09 16:59:46] 2026-01-09 21:59:13,516 | INFO     | current memory leak: -40.96 B/s (using 130 data points, chi2=0.13)
[2026-01-09 16:59:46] 2026-01-09 21:59:13,516 | INFO     | could have reported an average CPU frequency of 2191 MHz (9 samples)
[2026-01-09 16:59:46] 2026-01-09 21:59:13,517 | INFO     | ..............................
[2026-01-09 16:59:46] 2026-01-09 21:59:13,517 | INFO     | . Timing measurements:
[2026-01-09 16:59:46] 2026-01-09 21:59:13,517 | INFO     | . get job = 0 s
[2026-01-09 16:59:46] 2026-01-09 21:59:13,517 | INFO     | . initial setup = 2 s
[2026-01-09 16:59:46] 2026-01-09 21:59:13,517 | INFO     | . payload setup = 8 s
[2026-01-09 16:59:46] 2026-01-09 21:59:13,517 | INFO     | . stage-in = 0 s
[2026-01-09 16:59:46] 2026-01-09 21:59:13,517 | INFO     | . payload execution = 9494 s
[2026-01-09 16:59:46] 2026-01-09 21:59:13,517 | INFO     | . stage-out = 0 s
[2026-01-09 16:59:46] 2026-01-09 21:59:13,518 | INFO     | . log creation = 0 s
[2026-01-09 16:59:46] 2026-01-09 21:59:13,518 | INFO     | ..............................
[2026-01-09 16:59:46] 2026-01-09 21:59:13,602 | INFO     | 
[2026-01-09 16:59:46] 2026-01-09 21:59:13,603 | INFO     | job summary report
[2026-01-09 16:59:46] 2026-01-09 21:59:13,603 | INFO     | --------------------------------------------------
[2026-01-09 16:59:46] 2026-01-09 21:59:13,603 | INFO     | PanDA job id: 6963192125
[2026-01-09 16:59:46] 2026-01-09 21:59:13,603 | INFO     | task id: 47898826
[2026-01-09 16:59:46] 2026-01-09 21:59:13,603 | INFO     | errors: (none)
[2026-01-09 16:59:46] 2026-01-09 21:59:13,604 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 16:59:46] 2026-01-09 21:59:13,604 | INFO     | pilot state: finished 
[2026-01-09 16:59:46] 2026-01-09 21:59:13,604 | INFO     | transexitcode: 0
[2026-01-09 16:59:46] 2026-01-09 21:59:13,604 | INFO     | exeerrorcode: 0
[2026-01-09 16:59:46] 2026-01-09 21:59:13,604 | INFO     | exeerrordiag: 
[2026-01-09 16:59:46] 2026-01-09 21:59:13,605 | INFO     | exitcode: 0
[2026-01-09 16:59:46] 2026-01-09 21:59:13,605 | INFO     | exitmsg: OK
[2026-01-09 16:59:46] 2026-01-09 21:59:13,605 | INFO     | cpuconsumptiontime: 71606 s
[2026-01-09 16:59:46] 2026-01-09 21:59:13,605 | INFO     | nevents: 400
[2026-01-09 16:59:46] 2026-01-09 21:59:13,605 | INFO     | neventsw: 0
[2026-01-09 16:59:46] 2026-01-09 21:59:13,605 | INFO     | pid: 29260
[2026-01-09 16:59:46] 2026-01-09 21:59:13,606 | INFO     | pgrp: 29260
[2026-01-09 16:59:46] 2026-01-09 21:59:13,606 | INFO     | corecount: 8
[2026-01-09 16:59:46] 2026-01-09 21:59:13,606 | INFO     | event service: False
[2026-01-09 16:59:46] 2026-01-09 21:59:13,606 | INFO     | sizes: {0: 2283800, 1: 2283999, 6: 2284261, 11: 2284289, 9506: 2312682, 9507: 2321864, 9515: 2322066}
[2026-01-09 16:59:46] 2026-01-09 21:59:13,606 | INFO     | --------------------------------------------------
[2026-01-09 16:59:46] 2026-01-09 21:59:13,606 | INFO     | 
[2026-01-09 16:59:46] 2026-01-09 21:59:13,607 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 16:59:46] 2026-01-09 21:59:13,633 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 16:59:46] 2026-01-09 21:59:13,633 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 16:59:46] 2026-01-09 21:59:13,633 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 16:59:46] 2026-01-09 21:59:13,634 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 16:59:46] 2026-01-09 21:59:13,634 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 16:59:46] 2026-01-09 21:59:13,634 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 16:59:46] 2026-01-09 21:59:13,634 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 16:59:46] 2026-01-09 21:59:13,634 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 16:59:46] 2026-01-09 21:59:13,634 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 16:59:46] 2026-01-09 21:59:13,635 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 16:59:46] 2026-01-09 21:59:13,635 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 16:59:46] 2026-01-09 21:59:13,635 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 16:59:46] 2026-01-09 21:59:13,635 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 16:59:46] 2026-01-09 21:59:13,635 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 16:59:46] 2026-01-09 21:59:13,635 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 16:59:46] 2026-01-09 21:59:13,636 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 16:59:46] 2026-01-09 21:59:13,636 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 16:59:46] 2026-01-09 21:59:13,636 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 16:59:46] 2026-01-09 21:59:13,636 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 16:59:46] 2026-01-09 21:59:13,636 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 16:59:46] 2026-01-09 21:59:13,637 | INFO     | job 6963192125 has completed (purged errors)
[2026-01-09 16:59:46] 2026-01-09 21:59:13,637 | INFO     | overall cleanup function is called
[2026-01-09 16:59:46] 2026-01-09 21:59:14,645 | INFO     | --- collectZombieJob: --- 10, [29260]
[2026-01-09 16:59:46] 2026-01-09 21:59:14,645 | INFO     | zombie collector waiting for pid 29260
[2026-01-09 16:59:46] 2026-01-09 21:59:14,646 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 16:59:46] 2026-01-09 21:59:14,646 | INFO     | collected zombie processes
[2026-01-09 16:59:46] 2026-01-09 21:59:14,646 | INFO     | will attempt to kill all subprocesses of pid=29260
[2026-01-09 16:59:46] 2026-01-09 21:59:14,729 | INFO     | process IDs to be killed: [29260] (in reverse order)
[2026-01-09 16:59:46] 2026-01-09 21:59:14,779 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 16:59:46] 2026-01-09 21:59:14,779 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 16:59:46] 2026-01-09 21:59:14,783 | INFO     | did not find any defunct processes belonging to 29260
[2026-01-09 16:59:46] 2026-01-09 21:59:14,786 | INFO     | did not find any defunct processes belonging to 29260
[2026-01-09 16:59:46] 2026-01-09 21:59:14,786 | INFO     | ready for new job
[2026-01-09 16:59:46] 2026-01-09 21:59:14,786 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 16:59:46] 2026-01-09 21:59:14,788 | INFO     | ***************************************
[2026-01-09 16:59:46] 2026-01-09 21:59:14,788 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 16:59:46] 2026-01-09 21:59:14,788 | INFO     | ***************************************
[2026-01-09 16:59:46] 2026-01-09 21:59:14,788 | INFO     | 
[2026-01-09 16:59:46] 2026-01-09 21:59:14,788 | INFO     | architecture information:
[2026-01-09 16:59:46] 2026-01-09 21:59:14,789 | INFO     | executing command: cat /etc/os-release
[2026-01-09 16:59:46] 2026-01-09 21:59:14,805 | INFO     | cat /etc/os-release:
[2026-01-09 16:59:46] NAME="CentOS Linux"
[2026-01-09 16:59:46] VERSION="7 (Core)"
[2026-01-09 16:59:46] ID="centos"
[2026-01-09 16:59:46] ID_LIKE="rhel fedora"
[2026-01-09 16:59:46] VERSION_ID="7"
[2026-01-09 16:59:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 16:59:46] ANSI_COLOR="0;31"
[2026-01-09 16:59:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 16:59:46] HOME_URL="https://www.centos.org/"
[2026-01-09 16:59:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 16:59:46] 
[2026-01-09 16:59:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 16:59:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 16:59:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 16:59:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 16:59:46] 
[2026-01-09 16:59:46] 2026-01-09 21:59:14,805 | INFO     | ***************************************
[2026-01-09 16:59:46] 2026-01-09 21:59:15,309 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 16:59:46] 2026-01-09 21:59:15,328 | INFO     | sufficient remaining disk space (18527289344 B)
[2026-01-09 16:59:46] 2026-01-09 21:59:15,329 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 16:59:46] 2026-01-09 21:59:15,329 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 16:59:46] 2026-01-09 21:59:15,329 | INFO     | update_server=False
[2026-01-09 16:59:46] 2026-01-09 21:59:15,329 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 16:59:46] 2026-01-09 21:59:15,330 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 16:59:46] 2026-01-09 21:59:15,548 | INFO     | all data control threads have been joined
[2026-01-09 16:59:46] 2026-01-09 21:59:15,659 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 16:59:46] 2026-01-09 21:59:15,659 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 16:59:46] 2026-01-09 21:59:15,660 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 16:59:46] 2026-01-09 21:59:15,660 | INFO     | will abort loop
[2026-01-09 16:59:46] 2026-01-09 21:59:15,938 | INFO     | all payload control threads have been joined
[2026-01-09 16:59:46] 2026-01-09 21:59:16,019 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 16:59:46] 2026-01-09 21:59:16,331 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 16:59:46] 2026-01-09 21:59:16,334 | INFO     | [job] queue monitor thread has finished
[2026-01-09 16:59:46] 2026-01-09 21:59:16,335 | INFO     | [job] retrieve thread has finished
[2026-01-09 16:59:46] 2026-01-09 21:59:16,520 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 16:59:46] 2026-01-09 21:59:16,551 | INFO     | [data] control thread has finished
[2026-01-09 16:59:46] 2026-01-09 21:59:16,557 | INFO     | all job control threads have been joined
[2026-01-09 16:59:46] 2026-01-09 21:59:16,566 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 16:59:46] 2026-01-09 21:59:16,665 | INFO     | [job] job monitor thread has finished
[2026-01-09 16:59:46] 2026-01-09 21:59:16,743 | INFO     | [payload] validate_post thread has finished
[2026-01-09 16:59:46] 2026-01-09 21:59:16,916 | INFO     | [payload] failed_post thread has finished
[2026-01-09 16:59:46] 2026-01-09 21:59:16,944 | INFO     | [payload] control thread has finished
[2026-01-09 16:59:46] 2026-01-09 21:59:17,512 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 16:59:46] 2026-01-09 21:59:17,516 | INFO     | [job] validate thread has finished
[2026-01-09 16:59:46] 2026-01-09 21:59:17,539 | INFO     | [data] copytool_in thread has finished
[2026-01-09 16:59:46] 2026-01-09 21:59:17,563 | INFO     | [job] control thread has finished
[2026-01-09 16:59:46] 2026-01-09 21:59:17,676 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 16:59:46] 2026-01-09 21:59:18,025 | INFO     | [data] copytool_out thread has finished
[2026-01-09 16:59:46] 2026-01-09 21:59:20,337 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 16:59:46] 2026-01-09 21:59:36,808 | INFO     | [monitor] cgroup control has ended
[2026-01-09 16:59:46] 2026-01-09 21:59:37,792 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140182098065216)>', '<ExcThread(monitor, started 140181239731968)>']
[2026-01-09 16:59:46] 2026-01-09 21:59:42,814 | INFO     | all workflow threads have been joined
[2026-01-09 16:59:46] 2026-01-09 21:59:42,815 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 16:59:46] 2026-01-09 21:59:42,815 | INFO     | traces error code: 0
[2026-01-09 16:59:46] 2026-01-09 21:59:42,815 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 16:59:46] 2026-01-09 21:59:46,419 | INFO     | PID=22877 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 16:59:46] 2026-01-09 21:59:46,419 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 16:59:46] 2026-01-09 21:59:46,420 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 16:59:46] 2026-01-09 21:59:46,420 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 16:59:46] 2026-01-09 21:59:46,420 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 16:59:46] 2026-01-09 21:59:46,420 | INFO     | [monitor] control thread has ended
[2026-01-09 16:59:46] 2026-01-09 21:59:46,511 [wrapper] ==== pilot stdout END ====
[2026-01-09 16:59:46] 2026-01-09 21:59:46,516 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 16:59:46] 2026-01-09 21:59:46,520 [wrapper] pilotpid: 22877
[2026-01-09 16:59:46] 2026-01-09 21:59:46,524 [wrapper] Pilot exit status: 0
[2026-01-09 16:59:46] 2026-01-09 21:59:46,543 [wrapper] pandaids: 6963192125
[2026-01-09 16:59:46] 2026-01-09 21:59:46,587 [wrapper] cleanup supervisor_pilot 30169 22878
[2026-01-09 16:59:46] 2026-01-09 21:59:46,592 [wrapper] Test setup, not cleaning
[2026-01-09 16:59:46] 2026-01-09 21:59:46,597 [wrapper] apfmon messages muted
[2026-01-09 16:59:46] 2026-01-09 21:59:46,602 [wrapper] ==== wrapper stdout END ====
[2026-01-09 16:59:46] 2026-01-09 21:59:46,606 [wrapper] ==== wrapper stderr END ====
[2026-01-09 16:59:46]  *** Error codes and diagnostics ***
[2026-01-09 16:59:46]     "exeErrorCode": 0,
[2026-01-09 16:59:46]     "exeErrorDiag": "",
[2026-01-09 16:59:46]     "pilotErrorCode": 0,
[2026-01-09 16:59:46]     "pilotErrorDiag": "",
[2026-01-09 16:59:46]  *** Listing of results directory ***
[2026-01-09 16:59:46] total 443600
[2026-01-09 16:59:46] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 16:59:46] -rwx------ 1 boincer umatlas     36322 Jan  8 23:22 runpilot2-wrapper.sh
[2026-01-09 16:59:46] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 23:24 queuedata.json
[2026-01-09 16:59:46] -rw-r--r-- 1 boincer umatlas       100 Jan  9 14:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 16:59:46] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 14:20 run_atlas
[2026-01-09 16:59:46] -rw-r--r-- 1 boincer umatlas       105 Jan  9 14:20 job.xml
[2026-01-09 16:59:46] -rw-r--r-- 2 boincer umatlas 226789598 Jan  9 14:20 EVNT.47898824._001498.pool.root.1
[2026-01-09 16:59:46] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 14:20 start_atlas.sh
[2026-01-09 16:59:46] drwxrwx--x 2 boincer umatlas      4096 Jan  9 14:20 shared
[2026-01-09 16:59:46] -rw-r--r-- 2 boincer umatlas    592405 Jan  9 14:20 input.tar.gz
[2026-01-09 16:59:46] -rw-r--r-- 1 boincer umatlas         0 Jan  9 14:20 boinc_lockfile
[2026-01-09 16:59:46] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 14:20 pandaJob.out
[2026-01-09 16:59:46] -rw------- 1 boincer umatlas        57 Jan  9 14:20 setup.sh.local
[2026-01-09 16:59:46] -rw------- 1 boincer umatlas    989364 Jan  9 14:20 agis_schedconf.cvmfs.json
[2026-01-09 16:59:46] -rw------- 1 boincer umatlas   1516240 Jan  9 14:20 agis_ddmendpoints.agis.ALL.json
[2026-01-09 16:59:46] drwx------ 5 boincer umatlas      4096 Jan  9 14:20 pilot3
[2026-01-09 16:59:46] -rw------- 1 boincer umatlas 220078413 Jan  9 16:58 HITS.47898826._038993.pool.root.1
[2026-01-09 16:59:46] -rw-r--r-- 1 boincer umatlas      5909 Jan  9 16:58 init_data.xml
[2026-01-09 16:59:46] -rw-r--r-- 1 boincer umatlas       529 Jan  9 16:58 boinc_task_state.xml
[2026-01-09 16:59:46] -rw------- 1 boincer umatlas      1045 Jan  9 16:59 memory_monitor_summary.json
[2026-01-09 16:59:46] -rw------- 1 boincer umatlas    403981 Jan  9 16:59 log.47898826._038993.job.log.tgz.1
[2026-01-09 16:59:46] -rw------- 1 boincer umatlas      7848 Jan  9 16:59 heartbeat.json
[2026-01-09 16:59:46] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 16:59 boinc_mmap_file
[2026-01-09 16:59:46] -rw-r--r-- 1 boincer umatlas        27 Jan  9 16:59 wrapper_checkpoint.txt
[2026-01-09 16:59:46] -rw------- 1 boincer umatlas       745 Jan  9 16:59 pilotlog.txt
[2026-01-09 16:59:46] -rw------- 1 boincer umatlas        95 Jan  9 16:59 pilot_heartbeat.json
[2026-01-09 16:59:46] -rw------- 1 boincer umatlas   1329247 Jan  9 16:59 log.47898826._038993.job.log.1
[2026-01-09 16:59:46] -rw------- 1 boincer umatlas       357 Jan  9 16:59 output.list
[2026-01-09 16:59:46] -rw-r--r-- 1 boincer umatlas       620 Jan  9 16:59 runtime_log
[2026-01-09 16:59:46] -rw------- 1 boincer umatlas   1751040 Jan  9 16:59 result.tar.gz
[2026-01-09 16:59:46] -rw------- 1 boincer umatlas       660 Jan  9 16:59 SMrMDmdCJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQBmKDm93ATgm.diag
[2026-01-09 16:59:46] -rw-r--r-- 1 boincer umatlas      9342 Jan  9 16:59 runtime_log.err
[2026-01-09 16:59:46] -rw-r--r-- 1 boincer umatlas     21286 Jan  9 16:59 stderr.txt
[2026-01-09 16:59:46] HITS file was successfully produced:
[2026-01-09 16:59:46] -rw------- 1 boincer umatlas 220078413 Jan  9 16:58 shared/HITS.pool.root.1
[2026-01-09 16:59:46]  *** Contents of shared directory: ***
[2026-01-09 16:59:46] total 438712
[2026-01-09 16:59:46] -rw-r--r-- 2 boincer umatlas 226789598 Jan  9 14:20 ATLAS.root_0
[2026-01-09 16:59:46] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 14:20 start_atlas.sh
[2026-01-09 16:59:46] -rw-r--r-- 2 boincer umatlas    592405 Jan  9 14:20 input.tar.gz
[2026-01-09 16:59:46] -rw------- 1 boincer umatlas 220078413 Jan  9 16:58 HITS.pool.root.1
[2026-01-09 16:59:46] -rw------- 1 boincer umatlas   1751040 Jan  9 16:59 result.tar.gz
16:59:48 (18321): run_atlas exited; CPU time 71572.062127
16:59:48 (18321): called boinc_finish(0)

</stderr_txt>
]]>

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