Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:36:18 (3229773): wrapper (7.7.26015): starting
16:36:18 (3229773): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 16:36:18] Arguments: --nthreads 8
[2026-01-09 16:36:18] Threads: 8
[2026-01-09 16:36:18] Checking for CVMFS
[2026-01-09 16:36:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 16:36:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 16:36:19] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 16:36:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 16:36:20] 2.13.3.0 11959 93959 424400 154957 1 553 28871816 32935937 21225 16776704 0 367737809 99.469 494452798 33980 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 16:36:20] CVMFS is ok
[2026-01-09 16:36:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 16:36:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 16:36:20] Further information can be found at the LHC@home message board.
[2026-01-09 16:36:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 16:36:20] Checking for apptainer binary...
[2026-01-09 16:36:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 16:36:20] Running /usr/bin/apptainer --version
[2026-01-09 16:36:20] apptainer version 1.4.5-2.el9
[2026-01-09 16:36:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 16:36:21] c6-12-27-3.aglt2.org
[2026-01-09 16:36:21] apptainer works
[2026-01-09 16:36:21] Set ATHENA_PROC_NUMBER=8
[2026-01-09 16:36:21] Set ATHENA_CORE_NUMBER=8
[2026-01-09 16:36:21] Starting ATLAS job with PandaID=6963189637
[2026-01-09 16:36:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 20:45:35]  *** The last 200 lines of the pilot log: ***
[2026-01-09 20:45:35] 2026-01-10 01:41:00,547 | INFO     | time since job start (14639s) is within the limit (349056.0s)
[2026-01-09 20:45:35] 2026-01-10 01:41:02,010 | INFO     | monitor loop #908: job 0:6963189637 is in state 'finished'
[2026-01-09 20:45:35] 2026-01-10 01:41:02,010 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:45:35] 2026-01-10 01:41:02,554 | INFO     | time since job start (14641s) is within the limit (349056.0s)
[2026-01-09 20:45:35] 2026-01-10 01:41:04,515 | INFO     | monitor loop #909: job 0:6963189637 is in state 'finished'
[2026-01-09 20:45:35] 2026-01-10 01:41:04,515 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:45:35] 2026-01-10 01:41:04,561 | INFO     | time since job start (14643s) is within the limit (349056.0s)
[2026-01-09 20:45:35] 2026-01-10 01:41:04,884 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 20:45:35] 2026-01-10 01:41:04,963 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2704.466979166667
[2026-01-09 20:45:35] 2026-01-10 01:41:05,094 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963189637/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 20:45:35] 2026-01-10 01:41:05,095 | INFO     | extracted standard info from prmon json
[2026-01-09 20:45:35] 2026-01-10 01:41:05,095 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 20:45:35] 2026-01-10 01:41:05,095 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 20:45:35] 2026-01-10 01:41:05,114 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 20:45:35] 2026-01-10 01:41:05,114 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 20:45:35] 2026-01-10 01:41:05,147 | INFO     | fitting pss+swap vs Time
[2026-01-09 20:45:35] 2026-01-10 01:41:05,148 | INFO     | sum of square deviations: 4233454039.288706
[2026-01-09 20:45:35] 2026-01-10 01:41:05,149 | INFO     | sum of deviations: -26224475634.154797
[2026-01-09 20:45:35] 2026-01-10 01:41:05,149 | INFO     | mean x: 1768001920.4560668
[2026-01-09 20:45:35] 2026-01-10 01:41:05,150 | INFO     | mean y: 2558361.1757322177
[2026-01-09 20:45:35] 2026-01-10 01:41:05,173 | INFO     | intersect: 10954590166.37495
[2026-01-09 20:45:35] 2026-01-10 01:41:05,174 | INFO     | chi2: 2.062765287372657
[2026-01-09 20:45:35] 2026-01-10 01:41:05,174 | INFO     | sum of square deviations: 3973324265.726477
[2026-01-09 20:45:35] 2026-01-10 01:41:05,176 | INFO     | sum of deviations: -25721116756.53846
[2026-01-09 20:45:35] 2026-01-10 01:41:05,176 | INFO     | mean x: 1768001767.965812
[2026-01-09 20:45:35] 2026-01-10 01:41:05,176 | INFO     | mean y: 2558659.8076923075
[2026-01-09 20:45:35] 2026-01-10 01:41:05,176 | INFO     | intersect: 11447630055.534939
[2026-01-09 20:45:35] 2026-01-10 01:41:05,176 | INFO     | chi2: 2.0597461299240662
[2026-01-09 20:45:35] 2026-01-10 01:41:05,177 | INFO     | current chi2=2.0597461299240662 (change=0.1463645654245139 %)
[2026-01-09 20:45:35] 2026-01-10 01:41:05,204 | INFO     | right removable region: 233
[2026-01-09 20:45:35] 2026-01-10 01:41:05,206 | INFO     | sum of square deviations: 3973257775.726477
[2026-01-09 20:45:35] 2026-01-10 01:41:05,207 | INFO     | sum of deviations: -67697080840.837585
[2026-01-09 20:45:35] 2026-01-10 01:41:05,207 | INFO     | mean x: 1768002072.965812
[2026-01-09 20:45:35] 2026-01-10 01:41:05,207 | INFO     | mean y: 2582461.1452991455
[2026-01-09 20:45:35] 2026-01-10 01:41:05,207 | INFO     | intersect: 30126119874.584557
[2026-01-09 20:45:35] 2026-01-10 01:41:05,219 | INFO     | chi2: 0.3894939089289847
[2026-01-09 20:45:35] 2026-01-10 01:41:05,219 | INFO     | current chi2=0.3894939089289847 (change=81.11787553759531 %)
[2026-01-09 20:45:35] 2026-01-10 01:41:05,220 | INFO     | sum of square deviations: 3723945437.1178823
[2026-01-09 20:45:35] 2026-01-10 01:41:05,221 | INFO     | sum of deviations: -64427065107.28821
[2026-01-09 20:45:35] 2026-01-10 01:41:05,221 | INFO     | mean x: 1768002225.4759824
[2026-01-09 20:45:35] 2026-01-10 01:41:05,221 | INFO     | mean y: 2580428.9475982534
[2026-01-09 20:45:35] 2026-01-10 01:41:05,222 | INFO     | intersect: 30590352568.468822
[2026-01-09 20:45:35] 2026-01-10 01:41:05,222 | INFO     | chi2: 0.37575159702896627
[2026-01-09 20:45:35] 2026-01-10 01:41:05,222 | INFO     | current chi2=0.37575159702896627 (change=3.528248217746597 %)
[2026-01-09 20:45:35] 2026-01-10 01:41:05,222 | INFO     | left removable region: 20
[2026-01-09 20:45:35] 2026-01-10 01:41:05,223 | INFO     | sum of square deviations: 2996697821.248827
[2026-01-09 20:45:35] 2026-01-10 01:41:05,247 | INFO     | sum of deviations: -42118148259.61502
[2026-01-09 20:45:35] 2026-01-10 01:41:05,247 | INFO     | mean x: 1768002347.4976525
[2026-01-09 20:45:35] 2026-01-10 01:41:05,247 | INFO     | mean y: 2567112.7699530516
[2026-01-09 20:45:35] 2026-01-10 01:41:05,248 | INFO     | intersect: 24851580739.449673
[2026-01-09 20:45:35] 2026-01-10 01:41:05,248 | INFO     | chi2: 0.31446126456175516
[2026-01-09 20:45:35] 2026-01-10 01:41:05,248 | INFO     | current memory leak: -14.05 B/s (using 213 data points, chi2=0.31)
[2026-01-09 20:45:35] 2026-01-10 01:41:05,249 | INFO     | could have reported an average CPU frequency of 2668 MHz (11 samples)
[2026-01-09 20:45:35] 2026-01-10 01:41:05,249 | INFO     | ..............................
[2026-01-09 20:45:35] 2026-01-10 01:41:05,249 | INFO     | . Timing measurements:
[2026-01-09 20:45:35] 2026-01-10 01:41:05,249 | INFO     | . get job = 0 s
[2026-01-09 20:45:35] 2026-01-10 01:41:05,249 | INFO     | . initial setup = 3 s
[2026-01-09 20:45:35] 2026-01-10 01:41:05,249 | INFO     | . payload setup = 11 s
[2026-01-09 20:45:35] 2026-01-10 01:41:05,249 | INFO     | . stage-in = 0 s
[2026-01-09 20:45:35] 2026-01-10 01:41:05,249 | INFO     | . payload execution = 14576 s
[2026-01-09 20:45:35] 2026-01-10 01:41:05,249 | INFO     | . stage-out = 4 s
[2026-01-09 20:45:35] 2026-01-10 01:41:05,249 | INFO     | . log creation = 0 s
[2026-01-09 20:45:35] 2026-01-10 01:41:05,249 | INFO     | ..............................
[2026-01-09 20:45:35] 2026-01-10 01:41:05,667 | INFO     | 
[2026-01-09 20:45:35] 2026-01-10 01:41:05,667 | INFO     | job summary report
[2026-01-09 20:45:35] 2026-01-10 01:41:05,667 | INFO     | --------------------------------------------------
[2026-01-09 20:45:35] 2026-01-10 01:41:05,667 | INFO     | PanDA job id: 6963189637
[2026-01-09 20:45:35] 2026-01-10 01:41:05,667 | INFO     | task id: 47898826
[2026-01-09 20:45:35] 2026-01-10 01:41:05,667 | INFO     | errors: (none)
[2026-01-09 20:45:35] 2026-01-10 01:41:05,667 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 20:45:35] 2026-01-10 01:41:05,667 | INFO     | pilot state: finished 
[2026-01-09 20:45:35] 2026-01-10 01:41:05,667 | INFO     | transexitcode: 0
[2026-01-09 20:45:35] 2026-01-10 01:41:05,668 | INFO     | exeerrorcode: 0
[2026-01-09 20:45:35] 2026-01-10 01:41:05,668 | INFO     | exeerrordiag: 
[2026-01-09 20:45:35] 2026-01-10 01:41:05,668 | INFO     | exitcode: 0
[2026-01-09 20:45:35] 2026-01-10 01:41:05,668 | INFO     | exitmsg: OK
[2026-01-09 20:45:35] 2026-01-10 01:41:05,668 | INFO     | cpuconsumptiontime: 58567 s
[2026-01-09 20:45:35] 2026-01-10 01:41:05,668 | INFO     | nevents: 400
[2026-01-09 20:45:35] 2026-01-10 01:41:05,668 | INFO     | neventsw: 0
[2026-01-09 20:45:35] 2026-01-10 01:41:05,668 | INFO     | pid: 3241368
[2026-01-09 20:45:35] 2026-01-10 01:41:05,668 | INFO     | pgrp: 3241368
[2026-01-09 20:45:35] 2026-01-10 01:41:05,668 | INFO     | corecount: 8
[2026-01-09 20:45:35] 2026-01-10 01:41:05,668 | INFO     | event service: False
[2026-01-09 20:45:35] 2026-01-10 01:41:05,668 | INFO     | sizes: {0: 2283971, 9: 2284233, 11: 2284261, 14591: 2315247, 14592: 2315246, 14597: 2324300, 14599: 2324484, 14625: 2324678}
[2026-01-09 20:45:35] 2026-01-10 01:41:05,668 | INFO     | --------------------------------------------------
[2026-01-09 20:45:35] 2026-01-10 01:41:05,669 | INFO     | 
[2026-01-09 20:45:35] 2026-01-10 01:41:05,669 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 20:45:35] 2026-01-10 01:41:05,836 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 20:45:35] 2026-01-10 01:41:05,836 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 20:45:35] 2026-01-10 01:41:05,836 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 20:45:35] 2026-01-10 01:41:05,836 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 20:45:35] 2026-01-10 01:41:05,837 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 20:45:35] 2026-01-10 01:41:05,837 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 20:45:35] 2026-01-10 01:41:05,837 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 20:45:35] 2026-01-10 01:41:05,837 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 20:45:35] 2026-01-10 01:41:05,837 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 20:45:35] 2026-01-10 01:41:05,837 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 20:45:35] 2026-01-10 01:41:05,837 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 20:45:35] 2026-01-10 01:41:05,837 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 20:45:35] 2026-01-10 01:41:05,837 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 20:45:35] 2026-01-10 01:41:05,837 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 20:45:35] 2026-01-10 01:41:05,837 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 20:45:35] 2026-01-10 01:41:05,837 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 20:45:35] 2026-01-10 01:41:05,838 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 20:45:35] 2026-01-10 01:41:05,838 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 20:45:35] 2026-01-10 01:41:05,838 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 20:45:35] 2026-01-10 01:41:05,838 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 20:45:35] 2026-01-10 01:41:05,838 | INFO     | job 6963189637 has completed (purged errors)
[2026-01-09 20:45:35] 2026-01-10 01:41:05,838 | INFO     | overall cleanup function is called
[2026-01-09 20:45:35] 2026-01-10 01:41:06,860 | INFO     | --- collectZombieJob: --- 10, [3241368]
[2026-01-09 20:45:35] 2026-01-10 01:41:06,860 | INFO     | zombie collector waiting for pid 3241368
[2026-01-09 20:45:35] 2026-01-10 01:41:06,860 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 20:45:35] 2026-01-10 01:41:06,860 | INFO     | collected zombie processes
[2026-01-09 20:45:35] 2026-01-10 01:41:06,860 | INFO     | will attempt to kill all subprocesses of pid=3241368
[2026-01-09 20:45:35] 2026-01-10 01:41:07,923 | INFO     | process IDs to be killed: [3241368] (in reverse order)
[2026-01-09 20:45:35] 2026-01-10 01:41:08,093 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 20:45:35] 2026-01-10 01:41:08,095 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 20:45:35] 2026-01-10 01:41:08,183 | INFO     | did not find any defunct processes belonging to 3241368
[2026-01-09 20:45:35] 2026-01-10 01:41:08,261 | INFO     | did not find any defunct processes belonging to 3241368
[2026-01-09 20:45:35] 2026-01-10 01:41:08,261 | INFO     | ready for new job
[2026-01-09 20:45:35] 2026-01-10 01:41:08,261 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 20:45:35] 2026-01-10 01:41:08,263 | INFO     | ***************************************
[2026-01-09 20:45:35] 2026-01-10 01:41:08,263 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 20:45:35] 2026-01-10 01:41:08,263 | INFO     | ***************************************
[2026-01-09 20:45:35] 2026-01-10 01:41:08,263 | INFO     | 
[2026-01-09 20:45:35] 2026-01-10 01:41:08,307 | INFO     | architecture information:
[2026-01-09 20:45:35] 2026-01-10 01:41:08,308 | INFO     | executing command: cat /etc/os-release
[2026-01-09 20:45:35] 2026-01-10 01:41:08,392 | INFO     | cat /etc/os-release:
[2026-01-09 20:45:35] NAME="CentOS Linux"
[2026-01-09 20:45:35] VERSION="7 (Core)"
[2026-01-09 20:45:35] ID="centos"
[2026-01-09 20:45:35] ID_LIKE="rhel fedora"
[2026-01-09 20:45:35] VERSION_ID="7"
[2026-01-09 20:45:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 20:45:35] ANSI_COLOR="0;31"
[2026-01-09 20:45:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 20:45:35] HOME_URL="https://www.centos.org/"
[2026-01-09 20:45:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 20:45:35] 
[2026-01-09 20:45:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 20:45:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 20:45:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 20:45:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 20:45:35] 
[2026-01-09 20:45:35] 2026-01-10 01:41:08,393 | INFO     | ***************************************
[2026-01-09 20:45:35] 2026-01-10 01:41:08,896 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 20:45:35] 2026-01-10 01:41:09,069 | INFO     | sufficient remaining disk space (93584359424 B)
[2026-01-09 20:45:35] 2026-01-10 01:41:09,069 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 20:45:35] 2026-01-10 01:41:09,070 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 20:45:35] 2026-01-10 01:41:09,070 | INFO     | update_server=False
[2026-01-09 20:45:35] 2026-01-10 01:41:09,070 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 20:45:35] 2026-01-10 01:41:09,070 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 20:45:35] 2026-01-10 01:41:09,070 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 20:45:35] 2026-01-10 01:41:09,122 | INFO     | all payload control threads have been joined
[2026-01-09 20:45:35] 2026-01-10 01:41:09,169 | INFO     | all data control threads have been joined
[2026-01-09 20:45:35] 2026-01-10 01:41:09,545 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 20:45:35] 2026-01-10 01:41:09,545 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 20:45:35] 2026-01-10 01:41:09,545 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:45:35] 2026-01-10 01:41:09,545 | INFO     | will abort loop
[2026-01-09 20:45:35] 2026-01-10 01:41:10,076 | INFO     | [job] retrieve thread has finished
[2026-01-09 20:45:35] 2026-01-10 01:41:10,129 | INFO     | [payload] control thread has finished
[2026-01-09 20:45:35] 2026-01-10 01:41:10,175 | INFO     | [data] control thread has finished
[2026-01-09 20:45:35] 2026-01-10 01:41:10,195 | INFO     | all job control threads have been joined
[2026-01-09 20:45:35] 2026-01-10 01:41:10,395 | INFO     | [data] copytool_in thread has finished
[2026-01-09 20:45:35] 2026-01-10 01:41:10,399 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 20:45:35] 2026-01-10 01:41:10,556 | INFO     | [job] job monitor thread has finished
[2026-01-09 20:45:35] 2026-01-10 01:41:10,599 | INFO     | [payload] failed_post thread has finished
[2026-01-09 20:45:35] 2026-01-10 01:41:10,702 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:45:35] 2026-01-10 01:41:11,078 | INFO     | [data] copytool_out thread has finished
[2026-01-09 20:45:35] 2026-01-10 01:41:11,182 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 20:45:35] 2026-01-10 01:41:11,201 | INFO     | [job] control thread has finished
[2026-01-09 20:45:35] 2026-01-10 01:41:11,247 | INFO     | [job] validate thread has finished
[2026-01-09 20:45:35] 2026-01-10 01:41:11,256 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 20:45:35] 2026-01-10 01:41:11,258 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 20:45:35] 2026-01-10 01:41:11,484 | INFO     | [payload] validate_post thread has finished
[2026-01-09 20:45:35] 2026-01-10 01:41:11,708 | INFO     | [job] queue monitor thread has finished
[2026-01-09 20:45:35] 2026-01-10 01:41:13,081 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 20:45:35] 2026-01-10 01:41:26,973 | INFO     | [monitor] cgroup control has ended
[2026-01-09 20:45:35] 2026-01-10 01:41:28,213 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140156318840640)>', '<ExcThread(monitor, started 140155369281280)>']
[2026-01-09 20:45:35] 2026-01-10 01:41:33,239 | INFO     | all workflow threads have been joined
[2026-01-09 20:45:35] 2026-01-10 01:41:33,239 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 20:45:35] 2026-01-10 01:41:33,239 | INFO     | traces error code: 0
[2026-01-09 20:45:35] 2026-01-10 01:41:33,239 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 20:45:35] 2026-01-10 01:41:38,430 | INFO     | PID=3234575 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 20:45:35] 2026-01-10 01:41:38,430 | INFO     | .. there are 17 such processes running
[2026-01-09 20:45:35] 2026-01-10 01:41:38,430 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 20:45:35] 2026-01-10 01:41:38,431 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 20:45:35] 2026-01-10 01:41:38,431 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 20:45:35] 2026-01-10 01:41:38,431 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 20:45:35] 2026-01-10 01:41:38,431 | INFO     | [monitor] control thread has ended
[2026-01-09 20:45:35] 2026-01-10 01:41:38,624 [wrapper] ==== pilot stdout END ====
[2026-01-09 20:45:35] 2026-01-10 01:41:38,648 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 20:45:35] 2026-01-10 01:41:38,670 [wrapper] pilotpid: 3234575
[2026-01-09 20:45:35] 2026-01-10 01:41:38,695 [wrapper] Pilot exit status: 0
[2026-01-09 20:45:35] 2026-01-10 01:41:38,796 [wrapper] pandaids: 6963189637
[2026-01-09 20:45:35] 2026-01-10 01:41:39,123 [wrapper] cleanup supervisor_pilot 3841171 3234576
[2026-01-09 20:45:35] 2026-01-10 01:41:39,141 [wrapper] Test setup, not cleaning
[2026-01-09 20:45:35] 2026-01-10 01:41:39,161 [wrapper] apfmon messages muted
[2026-01-09 20:45:35] 2026-01-10 01:41:39,180 [wrapper] ==== wrapper stdout END ====
[2026-01-09 20:45:35] 2026-01-10 01:41:39,211 [wrapper] ==== wrapper stderr END ====
[2026-01-09 20:45:35]  *** Error codes and diagnostics ***
[2026-01-09 20:45:35]     "exeErrorCode": 0,
[2026-01-09 20:45:35]     "exeErrorDiag": "",
[2026-01-09 20:45:35]     "pilotErrorCode": 0,
[2026-01-09 20:45:35]     "pilotErrorDiag": "",
[2026-01-09 20:45:35]  *** Listing of results directory ***
[2026-01-09 20:45:35] total 446584
[2026-01-09 20:45:35] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 20:45:35] -rwx------. 1 boincer umatlas     36322 Jan  8 23:22 runpilot2-wrapper.sh
[2026-01-09 20:45:35] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 23:24 queuedata.json
[2026-01-09 20:45:35] -rw-r--r--. 1 boincer umatlas       100 Jan  9 16:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 20:45:35] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 16:36 run_atlas
[2026-01-09 20:45:35] -rw-r--r--. 1 boincer umatlas       105 Jan  9 16:36 job.xml
[2026-01-09 20:45:35] -rw-r--r--. 2 boincer umatlas 226879329 Jan  9 16:36 EVNT.47898824._001479.pool.root.1
[2026-01-09 20:45:35] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 16:36 start_atlas.sh
[2026-01-09 20:45:35] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 16:36 shared
[2026-01-09 20:45:35] -rw-r--r--. 2 boincer umatlas    592398 Jan  9 16:36 input.tar.gz
[2026-01-09 20:45:35] -rw-r--r--. 1 boincer umatlas         0 Jan  9 16:36 boinc_lockfile
[2026-01-09 20:45:35] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 16:36 pandaJob.out
[2026-01-09 20:45:35] -rw-------. 1 boincer umatlas        57 Jan  9 16:36 setup.sh.local
[2026-01-09 20:45:35] -rw-------. 1 boincer umatlas    989398 Jan  9 16:36 agis_schedconf.cvmfs.json
[2026-01-09 20:45:35] drwx------. 5 boincer umatlas      4096 Jan  9 16:37 pilot3
[2026-01-09 20:45:35] -rw-------. 1 boincer umatlas 221859113 Jan  9 20:39 HITS.47898826._038506.pool.root.1
[2026-01-09 20:45:35] -rw-r--r--. 1 boincer umatlas       531 Jan  9 20:40 boinc_task_state.xml
[2026-01-09 20:45:35] -rw-------. 1 boincer umatlas      1040 Jan  9 20:40 memory_monitor_summary.json
[2026-01-09 20:45:35] -rw-------. 1 boincer umatlas   1516240 Jan  9 20:40 agis_ddmendpoints.agis.ALL.json
[2026-01-09 20:45:35] -rw-------. 1 boincer umatlas    448783 Jan  9 20:40 log.47898826._038506.job.log.tgz.1
[2026-01-09 20:45:35] -rw-------. 1 boincer umatlas        95 Jan  9 20:40 pilot_heartbeat.json
[2026-01-09 20:45:35] -rw-------. 1 boincer umatlas      7828 Jan  9 20:41 heartbeat.json
[2026-01-09 20:45:35] -rw-------. 1 boincer umatlas       823 Jan  9 20:41 pilotlog.txt
[2026-01-09 20:45:35] -rw-------. 1 boincer umatlas   1872818 Jan  9 20:41 log.47898826._038506.job.log.1
[2026-01-09 20:45:35] -rw-------. 1 boincer umatlas       357 Jan  9 20:41 output.list
[2026-01-09 20:45:35] -rw-r--r--. 1 boincer umatlas       620 Jan  9 20:41 runtime_log
[2026-01-09 20:45:35] -rw-------. 1 boincer umatlas   2344960 Jan  9 20:41 result.tar.gz
[2026-01-09 20:45:35] -rw-------. 1 boincer umatlas       657 Jan  9 20:41 h1yNDmeCJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmeygKDmcwwyMm.diag
[2026-01-09 20:45:35] -rw-r--r--. 1 boincer umatlas      9353 Jan  9 20:41 runtime_log.err
[2026-01-09 20:45:35] -rw-r--r--. 1 boincer umatlas        28 Jan  9 20:45 wrapper_checkpoint.txt
[2026-01-09 20:45:35] -rw-r--r--. 1 boincer umatlas      6880 Jan  9 20:45 init_data.xml
[2026-01-09 20:45:35] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 20:45 boinc_mmap_file
[2026-01-09 20:45:35] -rw-r--r--. 1 boincer umatlas     21400 Jan  9 20:45 stderr.txt
[2026-01-09 20:45:35] HITS file was successfully produced:
[2026-01-09 20:45:35] -rw-------. 1 boincer umatlas 221859113 Jan  9 20:39 shared/HITS.pool.root.1
[2026-01-09 20:45:35]  *** Contents of shared directory: ***
[2026-01-09 20:45:35] total 441120
[2026-01-09 20:45:35] -rw-r--r--. 2 boincer umatlas 226879329 Jan  9 16:36 ATLAS.root_0
[2026-01-09 20:45:35] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 16:36 start_atlas.sh
[2026-01-09 20:45:35] -rw-r--r--. 2 boincer umatlas    592398 Jan  9 16:36 input.tar.gz
[2026-01-09 20:45:35] -rw-------. 1 boincer umatlas 221859113 Jan  9 20:39 HITS.pool.root.1
[2026-01-09 20:45:35] -rw-------. 1 boincer umatlas   2344960 Jan  9 20:41 result.tar.gz
20:45:37 (3229773): run_atlas exited; CPU time 59124.084206
20:45:37 (3229773): called boinc_finish(0)

</stderr_txt>
]]>

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