Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:26:38 (14750): wrapper (7.7.26015): starting
07:26:38 (14750): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 07:26:38] Arguments: --nthreads 8
[2026-01-10 07:26:38] Threads: 8
[2026-01-10 07:26:38] Checking for CVMFS
[2026-01-10 07:26:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 07:26:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 07:26:40] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 07:26:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 07:26:42] 2.11.2.0 32220 36494 123308 154970 3 84 18357249 25165824 899 130560 0 15789680 99.810 9760136 3869 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-10 07:26:42] CVMFS is ok
[2026-01-10 07:26:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 07:26:42] Checking for apptainer binary...
[2026-01-10 07:26:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 07:26:42] Running /usr/bin/apptainer --version
[2026-01-10 07:26:42] apptainer version 1.3.2-1.el7
[2026-01-10 07:26:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 07:26:54] cg-vwn447.simple-grid.lan
[2026-01-10 07:26:54] apptainer works
[2026-01-10 07:26:54] Set ATHENA_PROC_NUMBER=8
[2026-01-10 07:26:54] Set ATHENA_CORE_NUMBER=8
[2026-01-10 07:26:54] Starting ATLAS job with PandaID=6963189966
[2026-01-10 07:26:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 13:41:14]  *** The last 200 lines of the pilot log: ***
[2026-01-10 13:41:14] 2026-01-10 12:40:15,801 | INFO     | time since job start (22130s) is within the limit (349056.0s)
[2026-01-10 13:41:14] 2026-01-10 12:40:16,317 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 13:41:14] 2026-01-10 12:40:16,318 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-10 13:41:14] 2026-01-10 12:40:16,320 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6963189966/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 13:41:14] 2026-01-10 12:40:16,320 | INFO     | extracted standard info from prmon json
[2026-01-10 13:41:14] 2026-01-10 12:40:16,321 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 13:41:14] 2026-01-10 12:40:16,321 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 13:41:14] 2026-01-10 12:40:16,321 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 13:41:14] 2026-01-10 12:40:16,321 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 13:41:14] 2026-01-10 12:40:16,329 | INFO     | fitting pss+swap vs Time
[2026-01-10 13:41:14] 2026-01-10 12:40:16,330 | INFO     | sum of square deviations: 13523929848.0
[2026-01-10 13:41:14] 2026-01-10 12:40:16,350 | INFO     | sum of deviations: 200756271071.0
[2026-01-10 13:41:14] 2026-01-10 12:40:16,350 | INFO     | mean x: 1768037967.5
[2026-01-10 13:41:14] 2026-01-10 12:40:16,350 | INFO     | mean y: 2440029.6818181816
[2026-01-10 13:41:14] 2026-01-10 12:40:16,350 | INFO     | intersect: -26243238072.51133
[2026-01-10 13:41:14] 2026-01-10 12:40:16,351 | INFO     | chi2: 8.57512168849732
[2026-01-10 13:41:14] 2026-01-10 12:40:16,352 | INFO     | sum of square deviations: 12955770358.0
[2026-01-10 13:41:14] 2026-01-10 12:40:16,356 | INFO     | sum of deviations: 221569416598.0
[2026-01-10 13:41:14] 2026-01-10 12:40:16,356 | INFO     | mean x: 1768037815.0
[2026-01-10 13:41:14] 2026-01-10 12:40:16,356 | INFO     | mean y: 2445540.9682997116
[2026-01-10 13:41:14] 2026-01-10 12:40:16,356 | INFO     | intersect: -30234514235.86635
[2026-01-10 13:41:14] 2026-01-10 12:40:16,357 | INFO     | chi2: 7.789135799776305
[2026-01-10 13:41:14] 2026-01-10 12:40:16,357 | INFO     | current chi2=7.789135799776305 (change=9.165886121188677 %)
[2026-01-10 13:41:14] 2026-01-10 12:40:16,357 | INFO     | right removable region: 346
[2026-01-10 13:41:14] 2026-01-10 12:40:16,358 | INFO     | sum of square deviations: 12955770358.0
[2026-01-10 13:41:14] 2026-01-10 12:40:16,379 | INFO     | sum of deviations: 77060675482.00003
[2026-01-10 13:41:14] 2026-01-10 12:40:16,379 | INFO     | mean x: 1768038120.0
[2026-01-10 13:41:14] 2026-01-10 12:40:16,379 | INFO     | mean y: 2473216.9798270892
[2026-01-10 13:41:14] 2026-01-10 12:40:16,379 | INFO     | intersect: -10513783866.953075
[2026-01-10 13:41:14] 2026-01-10 12:40:16,380 | INFO     | chi2: 3.656166323791501
[2026-01-10 13:41:14] 2026-01-10 12:40:16,380 | INFO     | current chi2=3.656166323791501 (change=57.363096914462595 %)
[2026-01-10 13:41:14] 2026-01-10 12:40:16,381 | INFO     | sum of square deviations: 12403750705.5
[2026-01-10 13:41:14] 2026-01-10 12:40:16,385 | INFO     | sum of deviations: -16024096862.5
[2026-01-10 13:41:14] 2026-01-10 12:40:16,385 | INFO     | mean x: 1768038272.5
[2026-01-10 13:41:14] 2026-01-10 12:40:16,385 | INFO     | mean y: 2498907.4356725146
[2026-01-10 13:41:14] 2026-01-10 12:40:16,385 | INFO     | intersect: 2286583553.105365
[2026-01-10 13:41:14] 2026-01-10 12:40:16,386 | INFO     | chi2: 1.0154461750850594
[2026-01-10 13:41:14] 2026-01-10 12:40:16,386 | INFO     | current chi2=1.0154461750850594 (change=72.22647754076938 %)
[2026-01-10 13:41:14] 2026-01-10 12:40:16,386 | INFO     | sum of square deviations: 11867638328.0
[2026-01-10 13:41:14] 2026-01-10 12:40:16,390 | INFO     | sum of deviations: -30053969586.000004
[2026-01-10 13:41:14] 2026-01-10 12:40:16,390 | INFO     | mean x: 1768038425.0
[2026-01-10 13:41:14] 2026-01-10 12:40:16,390 | INFO     | mean y: 2502878.1928783385
[2026-01-10 13:41:14] 2026-01-10 12:40:16,391 | INFO     | intersect: 4479937358.68772
[2026-01-10 13:41:14] 2026-01-10 12:40:16,391 | INFO     | chi2: 0.9309206800367006
[2026-01-10 13:41:14] 2026-01-10 12:40:16,391 | INFO     | current chi2=0.9309206800367006 (change=8.323975915442146 %)
[2026-01-10 13:41:14] 2026-01-10 12:40:16,391 | INFO     | left removable region: 30
[2026-01-10 13:41:14] 2026-01-10 12:40:16,392 | INFO     | sum of square deviations: 9784425315.0
[2026-01-10 13:41:14] 2026-01-10 12:40:16,395 | INFO     | sum of deviations: 10919191265.5
[2026-01-10 13:41:14] 2026-01-10 12:40:16,395 | INFO     | mean x: 1768038699.5
[2026-01-10 13:41:14] 2026-01-10 12:40:16,396 | INFO     | mean y: 2504088.9335443038
[2026-01-10 13:41:14] 2026-01-10 12:40:16,396 | INFO     | intersect: -1970586011.212657
[2026-01-10 13:41:14] 2026-01-10 12:40:16,396 | INFO     | chi2: 0.0014943765159757532
[2026-01-10 13:41:14] 2026-01-10 12:40:16,397 | INFO     | current memory leak: 1.12 B/s (using 316 data points, chi2=0.00)
[2026-01-10 13:41:14] 2026-01-10 12:40:16,397 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-01-10 13:41:14] 2026-01-10 12:40:16,397 | INFO     | ..............................
[2026-01-10 13:41:14] 2026-01-10 12:40:16,398 | INFO     | . Timing measurements:
[2026-01-10 13:41:14] 2026-01-10 12:40:16,398 | INFO     | . get job = 0 s
[2026-01-10 13:41:14] 2026-01-10 12:40:16,398 | INFO     | . initial setup = 7 s
[2026-01-10 13:41:14] 2026-01-10 12:40:16,398 | INFO     | . payload setup = 158 s
[2026-01-10 13:41:14] 2026-01-10 12:40:16,398 | INFO     | . stage-in = 0 s
[2026-01-10 13:41:14] 2026-01-10 12:40:16,398 | INFO     | . payload execution = 21613 s
[2026-01-10 13:41:14] 2026-01-10 12:40:16,398 | INFO     | . stage-out = 4 s
[2026-01-10 13:41:14] 2026-01-10 12:40:16,398 | INFO     | . log creation = 1 s
[2026-01-10 13:41:14] 2026-01-10 12:40:16,398 | INFO     | ..............................
[2026-01-10 13:41:14] 2026-01-10 12:40:16,872 | INFO     | 
[2026-01-10 13:41:14] 2026-01-10 12:40:16,873 | INFO     | job summary report
[2026-01-10 13:41:14] 2026-01-10 12:40:16,873 | INFO     | --------------------------------------------------
[2026-01-10 13:41:14] 2026-01-10 12:40:16,873 | INFO     | PanDA job id: 6963189966
[2026-01-10 13:41:14] 2026-01-10 12:40:16,873 | INFO     | task id: 47898826
[2026-01-10 13:41:14] 2026-01-10 12:40:16,873 | INFO     | errors: (none)
[2026-01-10 13:41:14] 2026-01-10 12:40:16,873 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 13:41:14] 2026-01-10 12:40:16,873 | INFO     | pilot state: finished 
[2026-01-10 13:41:14] 2026-01-10 12:40:16,873 | INFO     | transexitcode: 0
[2026-01-10 13:41:14] 2026-01-10 12:40:16,873 | INFO     | exeerrorcode: 0
[2026-01-10 13:41:14] 2026-01-10 12:40:16,874 | INFO     | exeerrordiag: 
[2026-01-10 13:41:14] 2026-01-10 12:40:16,874 | INFO     | exitcode: 0
[2026-01-10 13:41:14] 2026-01-10 12:40:16,874 | INFO     | exitmsg: OK
[2026-01-10 13:41:14] 2026-01-10 12:40:16,874 | INFO     | cpuconsumptiontime: 81177 s
[2026-01-10 13:41:14] 2026-01-10 12:40:16,874 | INFO     | nevents: 400
[2026-01-10 13:41:14] 2026-01-10 12:40:16,874 | INFO     | neventsw: 0
[2026-01-10 13:41:14] 2026-01-10 12:40:16,874 | INFO     | pid: 24951
[2026-01-10 13:41:14] 2026-01-10 12:40:16,874 | INFO     | pgrp: 24951
[2026-01-10 13:41:14] 2026-01-10 12:40:16,874 | INFO     | corecount: 8
[2026-01-10 13:41:14] 2026-01-10 12:40:16,874 | INFO     | event service: False
[2026-01-10 13:41:14] 2026-01-10 12:40:16,875 | INFO     | sizes: {0: 2283798, 1: 2283997, 12: 2283997, 23: 2284025, 33: 2284053, 44: 2284109, 55: 2284265, 66: 2284293, 76: 2284321, 87: 2284377, 98: 2284405, 109: 2284713, 
[2026-01-10 13:41:14] 2026-01-10 12:40:16,875 | INFO     | --------------------------------------------------
[2026-01-10 13:41:14] 2026-01-10 12:40:16,875 | INFO     | 
[2026-01-10 13:41:14] 2026-01-10 12:40:16,875 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2026-01-10 13:41:14] 2026-01-10 12:40:17,378 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 13:41:14] 2026-01-10 12:40:17,378 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 13:41:14] 2026-01-10 12:40:17,378 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 13:41:14] 2026-01-10 12:40:17,378 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 13:41:14] 2026-01-10 12:40:17,379 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 13:41:14] 2026-01-10 12:40:17,379 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 13:41:14] 2026-01-10 12:40:17,379 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 13:41:14] 2026-01-10 12:40:17,379 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 13:41:14] 2026-01-10 12:40:17,379 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 13:41:14] 2026-01-10 12:40:17,379 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 13:41:14] 2026-01-10 12:40:17,379 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 13:41:14] 2026-01-10 12:40:17,379 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 13:41:14] 2026-01-10 12:40:17,379 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 13:41:14] 2026-01-10 12:40:17,380 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 13:41:14] 2026-01-10 12:40:17,380 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 13:41:14] 2026-01-10 12:40:17,380 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 13:41:14] 2026-01-10 12:40:17,380 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 13:41:14] 2026-01-10 12:40:17,380 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 13:41:14] 2026-01-10 12:40:17,380 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 13:41:14] 2026-01-10 12:40:17,380 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 13:41:14] 2026-01-10 12:40:17,380 | INFO     | job 6963189966 has completed (purged errors)
[2026-01-10 13:41:14] 2026-01-10 12:40:17,381 | INFO     | overall cleanup function is called
[2026-01-10 13:41:14] 2026-01-10 12:40:18,389 | INFO     | --- collectZombieJob: --- 10, [24951]
[2026-01-10 13:41:14] 2026-01-10 12:40:18,390 | INFO     | zombie collector waiting for pid 24951
[2026-01-10 13:41:14] 2026-01-10 12:40:18,390 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 13:41:14] 2026-01-10 12:40:18,390 | INFO     | collected zombie processes
[2026-01-10 13:41:14] 2026-01-10 12:40:18,390 | INFO     | will attempt to kill all subprocesses of pid=24951
[2026-01-10 13:41:14] 2026-01-10 12:40:18,467 | INFO     | process IDs to be killed: [24951] (in reverse order)
[2026-01-10 13:41:14] 2026-01-10 12:40:19,469 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 13:41:14] 2026-01-10 12:40:19,469 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 13:41:14] 2026-01-10 12:40:19,472 | INFO     | did not find any defunct processes belonging to 24951
[2026-01-10 13:41:14] 2026-01-10 12:40:19,474 | INFO     | did not find any defunct processes belonging to 24951
[2026-01-10 13:41:14] 2026-01-10 12:40:19,474 | INFO     | ready for new job
[2026-01-10 13:41:14] 2026-01-10 12:40:19,474 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 13:41:14] 2026-01-10 12:40:19,477 | INFO     | ***************************************
[2026-01-10 13:41:14] 2026-01-10 12:40:19,477 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 13:41:14] 2026-01-10 12:40:19,477 | INFO     | ***************************************
[2026-01-10 13:41:14] 2026-01-10 12:40:19,477 | INFO     | 
[2026-01-10 13:41:14] 2026-01-10 12:40:19,478 | INFO     | pilot is running in a VM
[2026-01-10 13:41:14] 2026-01-10 12:40:19,478 | INFO     | architecture information:
[2026-01-10 13:41:14] 2026-01-10 12:40:19,494 | INFO     | executing command: cat /etc/os-release
[2026-01-10 13:41:14] 2026-01-10 12:40:19,743 | INFO     | cat /etc/os-release:
[2026-01-10 13:41:14] NAME="CentOS Linux"
[2026-01-10 13:41:14] VERSION="7 (Core)"
[2026-01-10 13:41:14] ID="centos"
[2026-01-10 13:41:14] ID_LIKE="rhel fedora"
[2026-01-10 13:41:14] VERSION_ID="7"
[2026-01-10 13:41:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 13:41:14] ANSI_COLOR="0;31"
[2026-01-10 13:41:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 13:41:14] HOME_URL="https://www.centos.org/"
[2026-01-10 13:41:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 13:41:14] 
[2026-01-10 13:41:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 13:41:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 13:41:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 13:41:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 13:41:14] 
[2026-01-10 13:41:14] 2026-01-10 12:40:19,743 | INFO     | ***************************************
[2026-01-10 13:41:14] 2026-01-10 12:40:20,247 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2026-01-10 13:41:14] 2026-01-10 12:40:20,556 | INFO     | sufficient remaining disk space (496572039168 B)
[2026-01-10 13:41:14] 2026-01-10 12:40:20,556 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 13:41:14] 2026-01-10 12:40:20,557 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 13:41:14] 2026-01-10 12:40:20,557 | INFO     | update_server=False
[2026-01-10 13:41:14] 2026-01-10 12:40:20,557 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 13:41:14] 2026-01-10 12:40:20,576 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:41:14] 2026-01-10 12:40:20,577 | INFO     | aborting loop
[2026-01-10 13:41:14] 2026-01-10 12:40:20,604 | INFO     | all payload control threads have been joined
[2026-01-10 13:41:14] 2026-01-10 12:40:20,662 | INFO     | all job control threads have been joined
[2026-01-10 13:41:14] 2026-01-10 12:40:21,446 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 13:41:14] 2026-01-10 12:40:21,563 | INFO     | [job] retrieve thread has finished
[2026-01-10 13:41:14] 2026-01-10 12:40:21,583 | INFO     | [job] job monitor thread has finished
[2026-01-10 13:41:14] 2026-01-10 12:40:21,586 | INFO     | all data control threads have been joined
[2026-01-10 13:41:14] 2026-01-10 12:40:21,593 | INFO     | [payload] failed_post thread has finished
[2026-01-10 13:41:14] 2026-01-10 12:40:21,611 | INFO     | [payload] control thread has finished
[2026-01-10 13:41:14] 2026-01-10 12:40:21,625 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:41:14] 2026-01-10 12:40:21,669 | INFO     | [job] control thread has finished
[2026-01-10 13:41:14] 2026-01-10 12:40:21,729 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 13:41:14] 2026-01-10 12:40:22,016 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 13:41:14] 2026-01-10 12:40:22,091 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 13:41:14] 2026-01-10 12:40:22,330 | INFO     | [job] validate thread has finished
[2026-01-10 13:41:14] 2026-01-10 12:40:22,484 | INFO     | [data] copytool_in thread has finished
[2026-01-10 13:41:14] 2026-01-10 12:40:22,581 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 13:41:14] 2026-01-10 12:40:22,592 | INFO     | [data] control thread has finished
[2026-01-10 13:41:14] 2026-01-10 12:40:22,631 | INFO     | [job] queue monitor thread has finished
[2026-01-10 13:41:14] 2026-01-10 12:40:22,760 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 13:41:14] 2026-01-10 12:40:22,844 | INFO     | [payload] validate_post thread has finished
[2026-01-10 13:41:14] 2026-01-10 12:40:23,453 | INFO     | [data] copytool_out thread has finished
[2026-01-10 13:41:14] 2026-01-10 12:40:26,100 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 13:41:14] 2026-01-10 12:40:48,965 | INFO     | PID=18474 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 13:41:14] 2026-01-10 12:40:48,965 | INFO     | .. there are 2 such processes running
[2026-01-10 13:41:14] 2026-01-10 12:40:48,965 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 13:41:14] 2026-01-10 12:40:48,966 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 13:41:14] 2026-01-10 12:40:48,966 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 13:41:14] 2026-01-10 12:41:03,440 | INFO     | [monitor] cgroup control has ended
[2026-01-10 13:41:14] 2026-01-10 12:41:03,654 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140572826367808)>', '<ExcThread(monitor, started 140572266329856)>']
[2026-01-10 13:41:14] 2026-01-10 12:41:04,055 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 13:41:14] 2026-01-10 12:41:04,056 | INFO     | [monitor] control thread has ended
[2026-01-10 13:41:14] 2026-01-10 12:41:08,680 | INFO     | all workflow threads have been joined
[2026-01-10 13:41:14] 2026-01-10 12:41:08,681 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 13:41:14] 2026-01-10 12:41:08,681 | INFO     | traces error code: 0
[2026-01-10 13:41:14] 2026-01-10 12:41:08,681 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 13:41:14] 2026-01-10 12:41:09,087 [wrapper] ==== pilot stdout END ====
[2026-01-10 13:41:14] 2026-01-10 12:41:09,171 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 13:41:14] 2026-01-10 12:41:09,274 [wrapper] pilotpid: 18474
[2026-01-10 13:41:14] 2026-01-10 12:41:09,373 [wrapper] Pilot exit status: 0
[2026-01-10 13:41:14] 2026-01-10 12:41:09,892 [wrapper] pandaids: 6963189966
[2026-01-10 13:41:14] 2026-01-10 12:41:10,904 [wrapper] cleanup supervisor_pilot 24187 18475
[2026-01-10 13:41:14] 2026-01-10 12:41:11,053 [wrapper] Test setup, not cleaning
[2026-01-10 13:41:14] 2026-01-10 12:41:11,189 [wrapper] apfmon messages muted
[2026-01-10 13:41:14] 2026-01-10 12:41:11,281 [wrapper] ==== wrapper stdout END ====
[2026-01-10 13:41:14] 2026-01-10 12:41:11,394 [wrapper] ==== wrapper stderr END ====
[2026-01-10 13:41:14]  *** Error codes and diagnostics ***
[2026-01-10 13:41:14]     "exeErrorCode": 0,
[2026-01-10 13:41:14]     "exeErrorDiag": "",
[2026-01-10 13:41:14]     "pilotErrorCode": 0,
[2026-01-10 13:41:14]     "pilotErrorDiag": "",
[2026-01-10 13:41:14]  *** Listing of results directory ***
[2026-01-10 13:41:14] total 445756
[2026-01-10 13:41:14] -rw-r--r--. 1 boinc boinc      5112 Jan  9 05:21 queuedata.json
[2026-01-10 13:41:14] -rw-r--r--. 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 13:41:14] -rwx------. 1 boinc boinc     36322 Jan  9 05:22 runpilot2-wrapper.sh
[2026-01-10 13:41:14] -rw-r--r--. 1 boinc boinc       100 Jan 10 07:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 13:41:14] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 07:26 run_atlas
[2026-01-10 13:41:14] -rw-r--r--. 1 boinc boinc       105 Jan 10 07:26 job.xml
[2026-01-10 13:41:14] -rw-r--r--. 1 boinc boinc      6388 Jan 10 07:26 init_data.xml
[2026-01-10 13:41:14] -rw-r--r--. 2 boinc boinc 225363956 Jan 10 07:26 EVNT.47898824._001481.pool.root.1
[2026-01-10 13:41:14] -rw-r--r--. 2 boinc boinc     15847 Jan 10 07:26 start_atlas.sh
[2026-01-10 13:41:14] drwxrwx--x. 2 boinc boinc        68 Jan 10 07:26 shared
[2026-01-10 13:41:14] -rw-r--r--. 2 boinc boinc    592397 Jan 10 07:26 input.tar.gz
[2026-01-10 13:41:14] -rw-r--r--. 1 boinc boinc         0 Jan 10 07:26 boinc_lockfile
[2026-01-10 13:41:14] -rw-r--r--. 1 boinc boinc      2519 Jan 10 07:26 pandaJob.out
[2026-01-10 13:41:14] -rw-------. 1 boinc boinc    989374 Jan 10 07:31 agis_schedconf.cvmfs.json
[2026-01-10 13:41:14] drwx------. 5 boinc boinc      4096 Jan 10 07:31 pilot3
[2026-01-10 13:41:14] -rw-------. 1 boinc boinc 220197294 Jan 10 13:36 HITS.47898826._038551.pool.root.1
[2026-01-10 13:41:14] -rw-r--r--. 1 boinc boinc       531 Jan 10 13:37 boinc_task_state.xml
[2026-01-10 13:41:14] -rw-------. 1 boinc boinc      1011 Jan 10 13:38 memory_monitor_summary.json
[2026-01-10 13:41:14] -rw-------. 1 boinc boinc   1516240 Jan 10 13:38 agis_ddmendpoints.agis.ALL.json
[2026-01-10 13:41:14] -rw-------. 1 boinc boinc    547254 Jan 10 13:38 log.47898826._038551.job.log.tgz.1
[2026-01-10 13:41:14] -rw-------. 1 boinc boinc        95 Jan 10 13:39 pilot_heartbeat.json
[2026-01-10 13:41:14] -rw-------. 1 boinc boinc      7775 Jan 10 13:40 heartbeat.json
[2026-01-10 13:41:14] -rw-r--r--. 1 boinc boinc        28 Jan 10 13:40 wrapper_checkpoint.txt
[2026-01-10 13:41:14] -rw-r--r--. 1 boinc boinc      8192 Jan 10 13:40 boinc_mmap_file
[2026-01-10 13:41:14] -rw-------. 1 boinc boinc      4884 Jan 10 13:41 pilotlog.txt
[2026-01-10 13:41:14] -rw-------. 1 boinc boinc   2950405 Jan 10 13:41 log.47898826._038551.job.log.1
[2026-01-10 13:41:14] -rw-------. 1 boinc boinc       357 Jan 10 13:41 output.list
[2026-01-10 13:41:14] -rw-r--r--. 1 boinc boinc       620 Jan 10 13:41 runtime_log
[2026-01-10 13:41:14] -rw-------. 1 boinc boinc   3512320 Jan 10 13:41 result.tar.gz
[2026-01-10 13:41:14] -rw-r--r--. 1 boinc boinc      8817 Jan 10 13:41 runtime_log.err
[2026-01-10 13:41:14] -rw-------. 1 boinc boinc       657 Jan 10 13:41 h02KDmRCJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPAmKDmbXco5m.diag
[2026-01-10 13:41:14] -rw-r--r--. 1 boinc boinc     20770 Jan 10 13:41 stderr.txt
[2026-01-10 13:41:14] HITS file was successfully produced:
[2026-01-10 13:41:14] -rw-------. 1 boinc boinc 220197294 Jan 10 13:36 shared/HITS.pool.root.1
[2026-01-10 13:41:14]  *** Contents of shared directory: ***
[2026-01-10 13:41:14] total 439152
[2026-01-10 13:41:14] -rw-r--r--. 2 boinc boinc 225363956 Jan 10 07:26 ATLAS.root_0
[2026-01-10 13:41:14] -rw-r--r--. 2 boinc boinc     15847 Jan 10 07:26 start_atlas.sh
[2026-01-10 13:41:14] -rw-r--r--. 2 boinc boinc    592397 Jan 10 07:26 input.tar.gz
[2026-01-10 13:41:14] -rw-------. 1 boinc boinc 220197294 Jan 10 13:36 HITS.pool.root.1
[2026-01-10 13:41:14] -rw-------. 1 boinc boinc   3512320 Jan 10 13:41 result.tar.gz
13:41:15 (14750): run_atlas exited; CPU time 81399.979367
13:41:15 (14750): called boinc_finish(0)

</stderr_txt>
]]>

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