Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:08:39 (9329): wrapper (7.7.26015): starting
23:08:39 (9329): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 23:08:39] Arguments: --nthreads 8
[2026-01-09 23:08:39] Threads: 8
[2026-01-09 23:08:39] Checking for CVMFS
[2026-01-09 23:08:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 23:08:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 23:08:41] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 23:08:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 23:08:43] 2.11.2.0 3545 35993 115904 154957 2 132 23070803 25165825 1088 130560 0 17994334 99.831 9885484 3004 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 23:08:43] CVMFS is ok
[2026-01-09 23:08:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 23:08:43] Checking for apptainer binary...
[2026-01-09 23:08:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 23:08:43] Running /usr/bin/apptainer --version
[2026-01-09 23:08:43] apptainer version 1.3.2-1.el7
[2026-01-09 23:08:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 23:09:06] cg-vwn466.simple-grid.lan
[2026-01-09 23:09:06] apptainer works
[2026-01-09 23:09:06] Set ATHENA_PROC_NUMBER=8
[2026-01-09 23:09:06] Set ATHENA_CORE_NUMBER=8
[2026-01-09 23:09:06] Starting ATLAS job with PandaID=6963189223
[2026-01-09 23:09:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 05:04:01]  *** The last 200 lines of the pilot log: ***
[2026-01-10 05:04:01] 2026-01-10 04:03:04,854 | INFO     | time since job start (20991s) is within the limit (349056.0s)
[2026-01-10 05:04:01] 2026-01-10 04:03:05,505 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 05:04:01] 2026-01-10 04:03:05,506 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2026-01-10 05:04:01] 2026-01-10 04:03:05,508 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6963189223/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 05:04:01] 2026-01-10 04:03:05,509 | INFO     | extracted standard info from prmon json
[2026-01-10 05:04:01] 2026-01-10 04:03:05,509 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 05:04:01] 2026-01-10 04:03:05,509 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 05:04:01] 2026-01-10 04:03:05,509 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 05:04:01] 2026-01-10 04:03:05,510 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 05:04:01] 2026-01-10 04:03:05,516 | INFO     | fitting pss+swap vs Time
[2026-01-10 05:04:01] 2026-01-10 04:03:05,517 | INFO     | sum of square deviations: 11553509647.5
[2026-01-10 05:04:01] 2026-01-10 04:03:05,520 | INFO     | sum of deviations: 119599114877.50015
[2026-01-10 05:04:01] 2026-01-10 04:03:05,520 | INFO     | mean x: 1768007472.5
[2026-01-10 05:04:01] 2026-01-10 04:03:05,520 | INFO     | mean y: 2457291.523952096
[2026-01-10 05:04:01] 2026-01-10 04:03:05,520 | INFO     | intersect: -18299524985.65891
[2026-01-10 05:04:01] 2026-01-10 04:03:05,521 | INFO     | chi2: 8.025209929051636
[2026-01-10 05:04:01] 2026-01-10 04:03:05,521 | INFO     | sum of square deviations: 11042365180.0
[2026-01-10 05:04:01] 2026-01-10 04:03:05,525 | INFO     | sum of deviations: 139888965346.99988
[2026-01-10 05:04:01] 2026-01-10 04:03:05,525 | INFO     | mean x: 1768007320.0
[2026-01-10 05:04:01] 2026-01-10 04:03:05,525 | INFO     | mean y: 2463264.8328267476
[2026-01-10 05:04:01] 2026-01-10 04:03:05,525 | INFO     | intersect: -22395339261.086002
[2026-01-10 05:04:01] 2026-01-10 04:03:05,526 | INFO     | chi2: 7.308267297210555
[2026-01-10 05:04:01] 2026-01-10 04:03:05,526 | INFO     | current chi2=7.308267297210555 (change=8.933630872953433 %)
[2026-01-10 05:04:01] 2026-01-10 04:03:05,526 | INFO     | right removable region: 328
[2026-01-10 05:04:01] 2026-01-10 04:03:05,526 | INFO     | sum of square deviations: 11042365180.0
[2026-01-10 05:04:01] 2026-01-10 04:03:05,530 | INFO     | sum of deviations: 2282613412.000038
[2026-01-10 05:04:01] 2026-01-10 04:03:05,530 | INFO     | mean x: 1768007625.0
[2026-01-10 05:04:01] 2026-01-10 04:03:05,530 | INFO     | mean y: 2492274.8844984802
[2026-01-10 05:04:01] 2026-01-10 04:03:05,530 | INFO     | intersect: -362979963.3143231
[2026-01-10 05:04:01] 2026-01-10 04:03:05,531 | INFO     | chi2: 3.15607750093023
[2026-01-10 05:04:01] 2026-01-10 04:03:05,531 | INFO     | current chi2=3.15607750093023 (change=60.672960223693565 %)
[2026-01-10 05:04:01] 2026-01-10 04:03:05,532 | INFO     | sum of square deviations: 10546523325.0
[2026-01-10 05:04:01] 2026-01-10 04:03:05,535 | INFO     | sum of deviations: -72509789910.50002
[2026-01-10 05:04:01] 2026-01-10 04:03:05,535 | INFO     | mean x: 1768007777.5
[2026-01-10 05:04:01] 2026-01-10 04:03:05,535 | INFO     | mean y: 2515215.87345679
[2026-01-10 05:04:01] 2026-01-10 04:03:05,535 | INFO     | intersect: 12157978068.99857
[2026-01-10 05:04:01] 2026-01-10 04:03:05,536 | INFO     | chi2: 1.0582432004801792
[2026-01-10 05:04:01] 2026-01-10 04:03:05,536 | INFO     | current chi2=1.0582432004801792 (change=66.46967002019849 %)
[2026-01-10 05:04:01] 2026-01-10 04:03:05,537 | INFO     | sum of square deviations: 10065751520.0
[2026-01-10 05:04:01] 2026-01-10 04:03:05,540 | INFO     | sum of deviations: -81343251974.0
[2026-01-10 05:04:01] 2026-01-10 04:03:05,540 | INFO     | mean x: 1768007930.0
[2026-01-10 05:04:01] 2026-01-10 04:03:05,540 | INFO     | mean y: 2518004.6112852665
[2026-01-10 05:04:01] 2026-01-10 04:03:05,540 | INFO     | intersect: 14290126262.799261
[2026-01-10 05:04:01] 2026-01-10 04:03:05,541 | INFO     | chi2: 1.004044937762682
[2026-01-10 05:04:01] 2026-01-10 04:03:05,541 | INFO     | current chi2=1.004044937762682 (change=5.121531864594502 %)
[2026-01-10 05:04:01] 2026-01-10 04:03:05,541 | INFO     | left removable region: 30
[2026-01-10 05:04:01] 2026-01-10 04:03:05,541 | INFO     | sum of square deviations: 8205826414.5
[2026-01-10 05:04:01] 2026-01-10 04:03:05,544 | INFO     | sum of deviations: -29183887973.0
[2026-01-10 05:04:01] 2026-01-10 04:03:05,544 | INFO     | mean x: 1768008204.5
[2026-01-10 05:04:01] 2026-01-10 04:03:05,544 | INFO     | mean y: 2514835.3154362417
[2026-01-10 05:04:01] 2026-01-10 04:03:05,545 | INFO     | intersect: 6290407214.357044
[2026-01-10 05:04:01] 2026-01-10 04:03:05,545 | INFO     | chi2: 0.15656994609539904
[2026-01-10 05:04:01] 2026-01-10 04:03:05,545 | INFO     | current memory leak: -3.56 B/s (using 298 data points, chi2=0.16)
[2026-01-10 05:04:01] 2026-01-10 04:03:05,546 | INFO     | could have reported an average CPU frequency of 2250 MHz (14 samples)
[2026-01-10 05:04:01] 2026-01-10 04:03:05,546 | INFO     | ..............................
[2026-01-10 05:04:01] 2026-01-10 04:03:05,546 | INFO     | . Timing measurements:
[2026-01-10 05:04:01] 2026-01-10 04:03:05,546 | INFO     | . get job = 0 s
[2026-01-10 05:04:01] 2026-01-10 04:03:05,546 | INFO     | . initial setup = 8 s
[2026-01-10 05:04:01] 2026-01-10 04:03:05,546 | INFO     | . payload setup = 133 s
[2026-01-10 05:04:01] 2026-01-10 04:03:05,547 | INFO     | . stage-in = 0 s
[2026-01-10 05:04:01] 2026-01-10 04:03:05,547 | INFO     | . payload execution = 20520 s
[2026-01-10 05:04:01] 2026-01-10 04:03:05,547 | INFO     | . stage-out = 4 s
[2026-01-10 05:04:01] 2026-01-10 04:03:05,547 | INFO     | . log creation = 1 s
[2026-01-10 05:04:01] 2026-01-10 04:03:05,547 | INFO     | ..............................
[2026-01-10 05:04:01] 2026-01-10 04:03:05,722 | INFO     | 
[2026-01-10 05:04:01] 2026-01-10 04:03:05,723 | INFO     | job summary report
[2026-01-10 05:04:01] 2026-01-10 04:03:05,723 | INFO     | --------------------------------------------------
[2026-01-10 05:04:01] 2026-01-10 04:03:05,723 | INFO     | PanDA job id: 6963189223
[2026-01-10 05:04:01] 2026-01-10 04:03:05,723 | INFO     | task id: 47898826
[2026-01-10 05:04:01] 2026-01-10 04:03:05,723 | INFO     | errors: (none)
[2026-01-10 05:04:01] 2026-01-10 04:03:05,723 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 05:04:01] 2026-01-10 04:03:05,723 | INFO     | pilot state: finished 
[2026-01-10 05:04:01] 2026-01-10 04:03:05,723 | INFO     | transexitcode: 0
[2026-01-10 05:04:01] 2026-01-10 04:03:05,723 | INFO     | exeerrorcode: 0
[2026-01-10 05:04:01] 2026-01-10 04:03:05,723 | INFO     | exeerrordiag: 
[2026-01-10 05:04:01] 2026-01-10 04:03:05,723 | INFO     | exitcode: 0
[2026-01-10 05:04:01] 2026-01-10 04:03:05,724 | INFO     | exitmsg: OK
[2026-01-10 05:04:01] 2026-01-10 04:03:05,724 | INFO     | cpuconsumptiontime: 74261 s
[2026-01-10 05:04:01] 2026-01-10 04:03:05,724 | INFO     | nevents: 400
[2026-01-10 05:04:01] 2026-01-10 04:03:05,724 | INFO     | neventsw: 0
[2026-01-10 05:04:01] 2026-01-10 04:03:05,724 | INFO     | pid: 19548
[2026-01-10 05:04:01] 2026-01-10 04:03:05,724 | INFO     | pgrp: 19548
[2026-01-10 05:04:01] 2026-01-10 04:03:05,724 | INFO     | corecount: 8
[2026-01-10 05:04:01] 2026-01-10 04:03:05,724 | INFO     | event service: False
[2026-01-10 05:04:01] 2026-01-10 04:03:05,724 | INFO     | sizes: {0: 2283143, 1: 2283828, 2: 2283999, 12: 2284027, 23: 2284055, 34: 2284083, 45: 2284239, 55: 2284267, 66: 2284295, 77: 2284323, 88: 2284379, 98: 2284687, 10
[2026-01-10 05:04:01] 2026-01-10 04:03:05,724 | INFO     | --------------------------------------------------
[2026-01-10 05:04:01] 2026-01-10 04:03:05,725 | INFO     | 
[2026-01-10 05:04:01] 2026-01-10 04:03:05,725 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-01-10 05:04:01] 2026-01-10 04:03:06,350 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 05:04:01] 2026-01-10 04:03:06,350 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 05:04:01] 2026-01-10 04:03:06,350 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 05:04:01] 2026-01-10 04:03:06,350 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 05:04:01] 2026-01-10 04:03:06,350 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 05:04:01] 2026-01-10 04:03:06,350 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 05:04:01] 2026-01-10 04:03:06,351 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 05:04:01] 2026-01-10 04:03:06,351 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 05:04:01] 2026-01-10 04:03:06,351 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 05:04:01] 2026-01-10 04:03:06,351 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 05:04:01] 2026-01-10 04:03:06,351 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 05:04:01] 2026-01-10 04:03:06,351 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 05:04:01] 2026-01-10 04:03:06,351 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 05:04:01] 2026-01-10 04:03:06,351 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 05:04:01] 2026-01-10 04:03:06,351 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 05:04:01] 2026-01-10 04:03:06,351 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 05:04:01] 2026-01-10 04:03:06,352 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 05:04:01] 2026-01-10 04:03:06,352 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 05:04:01] 2026-01-10 04:03:06,352 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 05:04:01] 2026-01-10 04:03:06,352 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 05:04:01] 2026-01-10 04:03:06,352 | INFO     | job 6963189223 has completed (purged errors)
[2026-01-10 05:04:01] 2026-01-10 04:03:06,352 | INFO     | overall cleanup function is called
[2026-01-10 05:04:01] 2026-01-10 04:03:07,360 | INFO     | --- collectZombieJob: --- 10, [19548]
[2026-01-10 05:04:01] 2026-01-10 04:03:07,361 | INFO     | zombie collector waiting for pid 19548
[2026-01-10 05:04:01] 2026-01-10 04:03:07,361 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 05:04:01] 2026-01-10 04:03:07,361 | INFO     | collected zombie processes
[2026-01-10 05:04:01] 2026-01-10 04:03:07,361 | INFO     | will attempt to kill all subprocesses of pid=19548
[2026-01-10 05:04:01] 2026-01-10 04:03:07,445 | INFO     | process IDs to be killed: [19548] (in reverse order)
[2026-01-10 05:04:01] 2026-01-10 04:03:07,505 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 05:04:01] 2026-01-10 04:03:07,506 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 05:04:01] 2026-01-10 04:03:07,508 | INFO     | did not find any defunct processes belonging to 19548
[2026-01-10 05:04:01] 2026-01-10 04:03:07,509 | INFO     | did not find any defunct processes belonging to 19548
[2026-01-10 05:04:01] 2026-01-10 04:03:07,510 | INFO     | ready for new job
[2026-01-10 05:04:01] 2026-01-10 04:03:07,510 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 05:04:01] 2026-01-10 04:03:07,512 | INFO     | ***************************************
[2026-01-10 05:04:01] 2026-01-10 04:03:07,512 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 05:04:01] 2026-01-10 04:03:07,512 | INFO     | ***************************************
[2026-01-10 05:04:01] 2026-01-10 04:03:07,512 | INFO     | 
[2026-01-10 05:04:01] 2026-01-10 04:03:07,513 | INFO     | pilot is running in a VM
[2026-01-10 05:04:01] 2026-01-10 04:03:07,513 | INFO     | architecture information:
[2026-01-10 05:04:01] 2026-01-10 04:03:07,513 | INFO     | executing command: cat /etc/os-release
[2026-01-10 05:04:01] 2026-01-10 04:03:07,809 | INFO     | cat /etc/os-release:
[2026-01-10 05:04:01] NAME="CentOS Linux"
[2026-01-10 05:04:01] VERSION="7 (Core)"
[2026-01-10 05:04:01] ID="centos"
[2026-01-10 05:04:01] ID_LIKE="rhel fedora"
[2026-01-10 05:04:01] VERSION_ID="7"
[2026-01-10 05:04:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 05:04:01] ANSI_COLOR="0;31"
[2026-01-10 05:04:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 05:04:01] HOME_URL="https://www.centos.org/"
[2026-01-10 05:04:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 05:04:01] 
[2026-01-10 05:04:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 05:04:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 05:04:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 05:04:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 05:04:01] 
[2026-01-10 05:04:01] 2026-01-10 04:03:07,809 | INFO     | ***************************************
[2026-01-10 05:04:01] 2026-01-10 04:03:08,312 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-01-10 05:04:01] 2026-01-10 04:03:08,569 | INFO     | sufficient remaining disk space (494921580544 B)
[2026-01-10 05:04:01] 2026-01-10 04:03:08,569 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 05:04:01] 2026-01-10 04:03:08,570 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 05:04:01] 2026-01-10 04:03:08,570 | INFO     | update_server=False
[2026-01-10 05:04:01] 2026-01-10 04:03:08,570 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 05:04:01] 2026-01-10 04:03:08,570 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 05:04:01] 2026-01-10 04:03:08,574 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 05:04:01] 2026-01-10 04:03:08,577 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 05:04:01] 2026-01-10 04:03:08,578 | INFO     | aborting loop
[2026-01-10 05:04:01] 2026-01-10 04:03:09,202 | INFO     | all data control threads have been joined
[2026-01-10 05:04:01] 2026-01-10 04:03:09,579 | INFO     | [job] retrieve thread has finished
[2026-01-10 05:04:01] 2026-01-10 04:03:09,583 | INFO     | [job] job monitor thread has finished
[2026-01-10 05:04:01] 2026-01-10 04:03:09,729 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 05:04:01] 2026-01-10 04:03:09,872 | INFO     | all job control threads have been joined
[2026-01-10 05:04:01] 2026-01-10 04:03:09,935 | INFO     | all payload control threads have been joined
[2026-01-10 05:04:01] 2026-01-10 04:03:10,011 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 05:04:01] 2026-01-10 04:03:10,033 | INFO     | [job] validate thread has finished
[2026-01-10 05:04:01] 2026-01-10 04:03:10,208 | INFO     | [data] control thread has finished
[2026-01-10 05:04:01] 2026-01-10 04:03:10,263 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 05:04:01] 2026-01-10 04:03:10,293 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 05:04:01] 2026-01-10 04:03:10,309 | INFO     | [data] copytool_in thread has finished
[2026-01-10 05:04:01] 2026-01-10 04:03:10,581 | INFO     | [data] copytool_out thread has finished
[2026-01-10 05:04:01] 2026-01-10 04:03:10,737 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 05:04:01] 2026-01-10 04:03:10,878 | INFO     | [job] control thread has finished
[2026-01-10 05:04:01] 2026-01-10 04:03:10,941 | INFO     | [payload] control thread has finished
[2026-01-10 05:04:01] 2026-01-10 04:03:11,037 | INFO     | [payload] validate_post thread has finished
[2026-01-10 05:04:01] 2026-01-10 04:03:11,171 | INFO     | [payload] failed_post thread has finished
[2026-01-10 05:04:01] 2026-01-10 04:03:11,743 | INFO     | [job] queue monitor thread has finished
[2026-01-10 05:04:01] 2026-01-10 04:03:12,579 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 05:04:01] 2026-01-10 04:03:37,966 | INFO     | PID=13071 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 05:04:01] 2026-01-10 04:03:37,967 | INFO     | .. there are 2 such processes running
[2026-01-10 05:04:01] 2026-01-10 04:03:37,967 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 05:04:01] 2026-01-10 04:03:37,967 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 05:04:01] 2026-01-10 04:03:37,967 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 05:04:01] 2026-01-10 04:03:49,186 | INFO     | [monitor] cgroup control has ended
[2026-01-10 05:04:01] 2026-01-10 04:03:50,697 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140269162334016)>', '<ExcThread(monitor, started 140268590327552)>']
[2026-01-10 05:04:01] 2026-01-10 04:03:51,043 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 05:04:01] 2026-01-10 04:03:51,044 | INFO     | [monitor] control thread has ended
[2026-01-10 05:04:01] 2026-01-10 04:03:55,723 | INFO     | all workflow threads have been joined
[2026-01-10 05:04:01] 2026-01-10 04:03:55,724 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 05:04:01] 2026-01-10 04:03:55,724 | INFO     | traces error code: 0
[2026-01-10 05:04:01] 2026-01-10 04:03:55,724 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 05:04:01] 2026-01-10 04:03:56,192 [wrapper] ==== pilot stdout END ====
[2026-01-10 05:04:01] 2026-01-10 04:03:56,307 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 05:04:01] 2026-01-10 04:03:56,395 [wrapper] pilotpid: 13071
[2026-01-10 05:04:01] 2026-01-10 04:03:56,528 [wrapper] Pilot exit status: 0
[2026-01-10 05:04:01] 2026-01-10 04:03:56,930 [wrapper] pandaids: 6963189223
[2026-01-10 05:04:01] 2026-01-10 04:03:57,674 [wrapper] cleanup supervisor_pilot 19837 13072
[2026-01-10 05:04:01] 2026-01-10 04:03:57,815 [wrapper] Test setup, not cleaning
[2026-01-10 05:04:01] 2026-01-10 04:03:57,908 [wrapper] apfmon messages muted
[2026-01-10 05:04:01] 2026-01-10 04:03:57,968 [wrapper] ==== wrapper stdout END ====
[2026-01-10 05:04:01] 2026-01-10 04:03:58,039 [wrapper] ==== wrapper stderr END ====
[2026-01-10 05:04:01]  *** Error codes and diagnostics ***
[2026-01-10 05:04:01]     "exeErrorCode": 0,
[2026-01-10 05:04:01]     "exeErrorDiag": "",
[2026-01-10 05:04:01]     "pilotErrorCode": 0,
[2026-01-10 05:04:01]     "pilotErrorDiag": "",
[2026-01-10 05:04:01]  *** Listing of results directory ***
[2026-01-10 05:04:01] total 438948
[2026-01-10 05:04:01] -rw-r--r--. 1 boinc boinc      5112 Jan  9 05:21 queuedata.json
[2026-01-10 05:04:01] -rw-r--r--. 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 05:04:01] -rwx------. 1 boinc boinc     36322 Jan  9 05:22 runpilot2-wrapper.sh
[2026-01-10 05:04:01] -rw-r--r--. 1 boinc boinc       100 Jan  9 23:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 05:04:01] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 23:08 run_atlas
[2026-01-10 05:04:01] -rw-r--r--. 1 boinc boinc       105 Jan  9 23:08 job.xml
[2026-01-10 05:04:01] -rw-r--r--. 2 boinc boinc 225544212 Jan  9 23:08 EVNT.47898824._001463.pool.root.1
[2026-01-10 05:04:01] -rw-r--r--. 2 boinc boinc    592396 Jan  9 23:08 input.tar.gz
[2026-01-10 05:04:01] -rw-r--r--. 1 boinc boinc      6392 Jan  9 23:08 init_data.xml
[2026-01-10 05:04:01] -rw-r--r--. 2 boinc boinc     15847 Jan  9 23:08 start_atlas.sh
[2026-01-10 05:04:01] drwxrwx--x. 2 boinc boinc        68 Jan  9 23:08 shared
[2026-01-10 05:04:01] -rw-r--r--. 1 boinc boinc         0 Jan  9 23:08 boinc_lockfile
[2026-01-10 05:04:01] -rw-r--r--. 1 boinc boinc      2520 Jan  9 23:09 pandaJob.out
[2026-01-10 05:04:01] -rw-------. 1 boinc boinc    989398 Jan  9 23:13 agis_schedconf.cvmfs.json
[2026-01-10 05:04:01] drwx------. 5 boinc boinc      4096 Jan  9 23:13 pilot3
[2026-01-10 05:04:01] -rw-------. 1 boinc boinc 213368267 Jan 10 05:00 HITS.47898826._038105.pool.root.1
[2026-01-10 05:04:01] -rw-r--r--. 1 boinc boinc       531 Jan 10 05:00 boinc_task_state.xml
[2026-01-10 05:04:01] -rw-------. 1 boinc boinc      1016 Jan 10 05:01 memory_monitor_summary.json
[2026-01-10 05:04:01] -rw-------. 1 boinc boinc   1516240 Jan 10 05:01 agis_ddmendpoints.agis.ALL.json
[2026-01-10 05:04:01] -rw-------. 1 boinc boinc    534820 Jan 10 05:01 log.47898826._038105.job.log.tgz.1
[2026-01-10 05:04:01] -rw-------. 1 boinc boinc        95 Jan 10 05:03 pilot_heartbeat.json
[2026-01-10 05:04:01] -rw-------. 1 boinc boinc      7782 Jan 10 05:03 heartbeat.json
[2026-01-10 05:04:01] -rw-r--r--. 1 boinc boinc      8192 Jan 10 05:03 boinc_mmap_file
[2026-01-10 05:04:01] -rw-r--r--. 1 boinc boinc        28 Jan 10 05:03 wrapper_checkpoint.txt
[2026-01-10 05:04:01] -rw-------. 1 boinc boinc      4884 Jan 10 05:03 pilotlog.txt
[2026-01-10 05:04:01] -rw-------. 1 boinc boinc   2800365 Jan 10 05:03 log.47898826._038105.job.log.1
[2026-01-10 05:04:01] -rw-------. 1 boinc boinc       357 Jan 10 05:03 output.list
[2026-01-10 05:04:01] -rw-r--r--. 1 boinc boinc       620 Jan 10 05:04 runtime_log
[2026-01-10 05:04:01] -rw-------. 1 boinc boinc   3358720 Jan 10 05:04 result.tar.gz
[2026-01-10 05:04:01] -rw-r--r--. 1 boinc boinc      8817 Jan 10 05:04 runtime_log.err
[2026-01-10 05:04:01] -rw-------. 1 boinc boinc       657 Jan 10 05:04 druLDmECJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmo8lKDmKgt3Ao.diag
[2026-01-10 05:04:01] -rw-r--r--. 1 boinc boinc     20769 Jan 10 05:04 stderr.txt
[2026-01-10 05:04:01] HITS file was successfully produced:
[2026-01-10 05:04:01] -rw-------. 1 boinc boinc 213368267 Jan 10 05:00 shared/HITS.pool.root.1
[2026-01-10 05:04:01]  *** Contents of shared directory: ***
[2026-01-10 05:04:01] total 432504
[2026-01-10 05:04:01] -rw-r--r--. 2 boinc boinc 225544212 Jan  9 23:08 ATLAS.root_0
[2026-01-10 05:04:01] -rw-r--r--. 2 boinc boinc    592396 Jan  9 23:08 input.tar.gz
[2026-01-10 05:04:01] -rw-r--r--. 2 boinc boinc     15847 Jan  9 23:08 start_atlas.sh
[2026-01-10 05:04:01] -rw-------. 1 boinc boinc 213368267 Jan 10 05:00 HITS.pool.root.1
[2026-01-10 05:04:01] -rw-------. 1 boinc boinc   3358720 Jan 10 05:04 result.tar.gz
05:04:03 (9329): run_atlas exited; CPU time 74465.453819
05:04:03 (9329): called boinc_finish(0)

</stderr_txt>
]]>

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