Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:48:11 (2749875): wrapper (7.7.26015): starting
16:48:11 (2749875): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 16:48:11] Arguments: --nthreads 3
[2026-01-10 16:48:11] Threads: 3
[2026-01-10 16:48:11] Checking for CVMFS
[2026-01-10 16:48:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 16:48:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 16:48:11] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 16:48:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 16:48:11] 2.9.2.0 1875816 3855 87860 154984 0 57 35297345 36864001 0 130560 0 2305147 99.988 142583 2663 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 16:48:11] CVMFS is ok
[2026-01-10 16:48:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 16:48:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 16:48:11] Further information can be found at the LHC@home message board.
[2026-01-10 16:48:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 16:48:11] Checking for apptainer binary...
[2026-01-10 16:48:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 16:48:11] Running /usr/bin/apptainer --version
[2026-01-10 16:48:11] apptainer version 1.4.1-1.1
[2026-01-10 16:48:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 16:48:11] atlasA091
[2026-01-10 16:48:11] apptainer works
[2026-01-10 16:48:11] Set ATHENA_PROC_NUMBER=3
[2026-01-10 16:48:11] Set ATHENA_CORE_NUMBER=3
[2026-01-10 16:48:11] Starting ATLAS job with PandaID=6963190132
[2026-01-10 16:48:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 18:43:31]  *** The last 200 lines of the pilot log: ***
[2026-01-10 18:43:31] 2026-01-10 17:42:56,124 | WARNING  | process 2760044 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 18:43:31] 2026-01-10 17:42:56,124 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6963190132/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 18:43:31] 2026-01-10 17:42:56,164 | INFO     | number of running child processes to parent process 2760044: 1
[2026-01-10 18:43:31] 2026-01-10 17:42:56,164 | INFO     | maximum number of monitored processes: 6
[2026-01-10 18:43:31] 2026-01-10 17:42:57,421 | INFO     | time since job start (6880s) is within the limit (349056.0s)
[2026-01-10 18:43:31] 2026-01-10 17:42:58,667 | INFO     | monitor loop #528: job 0:6963190132 is in state 'finished'
[2026-01-10 18:43:31] 2026-01-10 17:42:58,667 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 18:43:31] 2026-01-10 17:42:59,147 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 18:43:31] 2026-01-10 17:42:59,148 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3577.22725
[2026-01-10 18:43:31] 2026-01-10 17:42:59,149 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6963190132/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 18:43:31] 2026-01-10 17:42:59,149 | INFO     | extracted standard info from prmon json
[2026-01-10 18:43:31] 2026-01-10 17:42:59,149 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 18:43:31] 2026-01-10 17:42:59,149 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 18:43:31] 2026-01-10 17:42:59,149 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 18:43:31] 2026-01-10 17:42:59,149 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 18:43:31] 2026-01-10 17:42:59,150 | INFO     | fitting pss+swap vs Time
[2026-01-10 18:43:31] 2026-01-10 17:42:59,150 | INFO     | sum of square deviations: 447383272.0
[2026-01-10 18:43:31] 2026-01-10 17:42:59,150 | INFO     | sum of deviations: -2538203533.9999967
[2026-01-10 18:43:31] 2026-01-10 17:42:59,150 | INFO     | mean x: 1768063533.0
[2026-01-10 18:43:31] 2026-01-10 17:42:59,151 | INFO     | mean y: 2378450.610619469
[2026-01-10 18:43:31] 2026-01-10 17:42:59,151 | INFO     | intersect: 10033386288.10777
[2026-01-10 18:43:31] 2026-01-10 17:42:59,151 | INFO     | chi2: 1.5829835886449743
[2026-01-10 18:43:31] 2026-01-10 17:42:59,151 | INFO     | sum of square deviations: 390582207.0
[2026-01-10 18:43:31] 2026-01-10 17:42:59,151 | INFO     | sum of deviations: -2162951359.0
[2026-01-10 18:43:31] 2026-01-10 17:42:59,151 | INFO     | mean x: 1768063380.5
[2026-01-10 18:43:31] 2026-01-10 17:42:59,151 | INFO     | mean y: 2379458.6296296297
[2026-01-10 18:43:31] 2026-01-10 17:42:59,151 | INFO     | intersect: 9793493910.626694
[2026-01-10 18:43:31] 2026-01-10 17:42:59,151 | INFO     | chi2: 1.5833464608546242
[2026-01-10 18:43:31] 2026-01-10 17:42:59,151 | INFO     | current chi2=1.5833464608546242 (change=-0.022923308381259232 %)
[2026-01-10 18:43:31] 2026-01-10 17:42:59,151 | INFO     | right removable region: 107
[2026-01-10 18:43:31] 2026-01-10 17:42:59,151 | INFO     | sum of square deviations: 390582207.0
[2026-01-10 18:43:31] 2026-01-10 17:42:59,151 | INFO     | sum of deviations: -15802199480.499994
[2026-01-10 18:43:31] 2026-01-10 17:42:59,151 | INFO     | mean x: 1768063685.5
[2026-01-10 18:43:31] 2026-01-10 17:42:59,151 | INFO     | mean y: 2413014.4166666665
[2026-01-10 18:43:31] 2026-01-10 17:42:59,151 | INFO     | intersect: 71534844732.43143
[2026-01-10 18:43:31] 2026-01-10 17:42:59,152 | INFO     | chi2: 0.1297478767855136
[2026-01-10 18:43:31] 2026-01-10 17:42:59,152 | INFO     | current chi2=0.1297478767855136 (change=91.80358673859801 %)
[2026-01-10 18:43:31] 2026-01-10 17:42:59,152 | INFO     | sum of square deviations: 338804492.0
[2026-01-10 18:43:31] 2026-01-10 17:42:59,152 | INFO     | sum of deviations: -10877167298.0
[2026-01-10 18:43:31] 2026-01-10 17:42:59,152 | INFO     | mean x: 1768063838.0
[2026-01-10 18:43:31] 2026-01-10 17:42:59,152 | INFO     | mean y: 2398486.708737864
[2026-01-10 18:43:31] 2026-01-10 17:42:59,152 | INFO     | intersect: 56765300436.27902
[2026-01-10 18:43:31] 2026-01-10 17:42:59,152 | INFO     | chi2: 0.10214028605052383
[2026-01-10 18:43:31] 2026-01-10 17:42:59,152 | INFO     | current chi2=0.10214028605052383 (change=21.27787476678938 %)
[2026-01-10 18:43:31] 2026-01-10 17:42:59,152 | INFO     | left removable region: 20
[2026-01-10 18:43:31] 2026-01-10 17:42:59,152 | INFO     | sum of square deviations: 204163828.0
[2026-01-10 18:43:31] 2026-01-10 17:42:59,152 | INFO     | sum of deviations: -2764319371.0
[2026-01-10 18:43:31] 2026-01-10 17:42:59,152 | INFO     | mean x: 1768063960.0
[2026-01-10 18:43:31] 2026-01-10 17:42:59,152 | INFO     | mean y: 2373067.252873563
[2026-01-10 18:43:31] 2026-01-10 17:42:59,152 | INFO     | intersect: 23941449355.511776
[2026-01-10 18:43:31] 2026-01-10 17:42:59,152 | INFO     | chi2: 0.03536036555315543
[2026-01-10 18:43:31] 2026-01-10 17:42:59,152 | INFO     | current memory leak: -13.54 B/s (using 87 data points, chi2=0.04)
[2026-01-10 18:43:31] 2026-01-10 17:42:59,152 | INFO     | could have reported an average CPU frequency of 3887 MHz (7 samples)
[2026-01-10 18:43:31] 2026-01-10 17:42:59,153 | INFO     | ..............................
[2026-01-10 18:43:31] 2026-01-10 17:42:59,153 | INFO     | . Timing measurements:
[2026-01-10 18:43:31] 2026-01-10 17:42:59,153 | INFO     | . get job = 0 s
[2026-01-10 18:43:31] 2026-01-10 17:42:59,153 | INFO     | . initial setup = 1 s
[2026-01-10 18:43:31] 2026-01-10 17:42:59,153 | INFO     | . payload setup = 3 s
[2026-01-10 18:43:31] 2026-01-10 17:42:59,153 | INFO     | . stage-in = 0 s
[2026-01-10 18:43:31] 2026-01-10 17:42:59,153 | INFO     | . payload execution = 6854 s
[2026-01-10 18:43:31] 2026-01-10 17:42:59,153 | INFO     | . stage-out = 0 s
[2026-01-10 18:43:31] 2026-01-10 17:42:59,153 | INFO     | . log creation = 0 s
[2026-01-10 18:43:31] 2026-01-10 17:42:59,153 | INFO     | ..............................
[2026-01-10 18:43:31] 2026-01-10 17:42:59,182 | INFO     | 
[2026-01-10 18:43:31] 2026-01-10 17:42:59,182 | INFO     | job summary report
[2026-01-10 18:43:31] 2026-01-10 17:42:59,182 | INFO     | --------------------------------------------------
[2026-01-10 18:43:31] 2026-01-10 17:42:59,182 | INFO     | PanDA job id: 6963190132
[2026-01-10 18:43:31] 2026-01-10 17:42:59,182 | INFO     | task id: 47898826
[2026-01-10 18:43:31] 2026-01-10 17:42:59,182 | INFO     | errors: (none)
[2026-01-10 18:43:31] 2026-01-10 17:42:59,182 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 18:43:31] 2026-01-10 17:42:59,183 | INFO     | pilot state: finished 
[2026-01-10 18:43:31] 2026-01-10 17:42:59,183 | INFO     | transexitcode: 0
[2026-01-10 18:43:31] 2026-01-10 17:42:59,183 | INFO     | exeerrorcode: 0
[2026-01-10 18:43:31] 2026-01-10 17:42:59,183 | INFO     | exeerrordiag: 
[2026-01-10 18:43:31] 2026-01-10 17:42:59,183 | INFO     | exitcode: 0
[2026-01-10 18:43:31] 2026-01-10 17:42:59,183 | INFO     | exitmsg: OK
[2026-01-10 18:43:31] 2026-01-10 17:42:59,183 | INFO     | cpuconsumptiontime: 19919 s
[2026-01-10 18:43:31] 2026-01-10 17:42:59,183 | INFO     | nevents: 400
[2026-01-10 18:43:31] 2026-01-10 17:42:59,183 | INFO     | neventsw: 0
[2026-01-10 18:43:31] 2026-01-10 17:42:59,183 | INFO     | pid: 2760044
[2026-01-10 18:43:31] 2026-01-10 17:42:59,183 | INFO     | pgrp: 2760044
[2026-01-10 18:43:31] 2026-01-10 17:42:59,183 | INFO     | corecount: 3
[2026-01-10 18:43:31] 2026-01-10 17:42:59,183 | INFO     | event service: False
[2026-01-10 18:43:31] 2026-01-10 17:42:59,183 | INFO     | sizes: {0: 2283974, 3: 2284236, 11: 2284264, 6861: 2320614, 6864: 2320614, 6868: 2320808}
[2026-01-10 18:43:31] 2026-01-10 17:42:59,183 | INFO     | --------------------------------------------------
[2026-01-10 18:43:31] 2026-01-10 17:42:59,183 | INFO     | 
[2026-01-10 18:43:31] 2026-01-10 17:42:59,183 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-01-10 18:43:31] 2026-01-10 17:42:59,195 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 18:43:31] 2026-01-10 17:42:59,195 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 18:43:31] 2026-01-10 17:42:59,195 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 18:43:31] 2026-01-10 17:42:59,195 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 18:43:31] 2026-01-10 17:42:59,195 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 18:43:31] 2026-01-10 17:42:59,196 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 18:43:31] 2026-01-10 17:42:59,196 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 18:43:31] 2026-01-10 17:42:59,196 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 18:43:31] 2026-01-10 17:42:59,196 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 18:43:31] 2026-01-10 17:42:59,196 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 18:43:31] 2026-01-10 17:42:59,196 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 18:43:31] 2026-01-10 17:42:59,196 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 18:43:31] 2026-01-10 17:42:59,196 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 18:43:31] 2026-01-10 17:42:59,196 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 18:43:31] 2026-01-10 17:42:59,196 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 18:43:31] 2026-01-10 17:42:59,196 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 18:43:31] 2026-01-10 17:42:59,196 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 18:43:31] 2026-01-10 17:42:59,196 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 18:43:31] 2026-01-10 17:42:59,196 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 18:43:31] 2026-01-10 17:42:59,196 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 18:43:31] 2026-01-10 17:42:59,196 | INFO     | job 6963190132 has completed (purged errors)
[2026-01-10 18:43:31] 2026-01-10 17:42:59,196 | INFO     | overall cleanup function is called
[2026-01-10 18:43:31] 2026-01-10 17:43:00,203 | INFO     | --- collectZombieJob: --- 10, [2760044]
[2026-01-10 18:43:31] 2026-01-10 17:43:00,203 | INFO     | zombie collector waiting for pid 2760044
[2026-01-10 18:43:31] 2026-01-10 17:43:00,203 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 18:43:31] 2026-01-10 17:43:00,203 | INFO     | collected zombie processes
[2026-01-10 18:43:31] 2026-01-10 17:43:00,203 | INFO     | will attempt to kill all subprocesses of pid=2760044
[2026-01-10 18:43:31] 2026-01-10 17:43:00,249 | INFO     | process IDs to be killed: [2760044] (in reverse order)
[2026-01-10 18:43:31] 2026-01-10 17:43:00,275 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 18:43:31] 2026-01-10 17:43:00,275 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 18:43:31] 2026-01-10 17:43:00,276 | INFO     | did not find any defunct processes belonging to 2760044
[2026-01-10 18:43:31] 2026-01-10 17:43:00,278 | INFO     | did not find any defunct processes belonging to 2760044
[2026-01-10 18:43:31] 2026-01-10 17:43:00,278 | INFO     | ready for new job
[2026-01-10 18:43:31] 2026-01-10 17:43:00,278 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 18:43:31] 2026-01-10 17:43:00,278 | INFO     | ***************************************
[2026-01-10 18:43:31] 2026-01-10 17:43:00,278 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 18:43:31] 2026-01-10 17:43:00,278 | INFO     | ***************************************
[2026-01-10 18:43:31] 2026-01-10 17:43:00,278 | INFO     | 
[2026-01-10 18:43:31] 2026-01-10 17:43:00,279 | INFO     | architecture information:
[2026-01-10 18:43:31] 2026-01-10 17:43:00,279 | INFO     | executing command: cat /etc/os-release
[2026-01-10 18:43:31] 2026-01-10 17:43:00,288 | INFO     | cat /etc/os-release:
[2026-01-10 18:43:31] NAME="CentOS Linux"
[2026-01-10 18:43:31] VERSION="7 (Core)"
[2026-01-10 18:43:31] ID="centos"
[2026-01-10 18:43:31] ID_LIKE="rhel fedora"
[2026-01-10 18:43:31] VERSION_ID="7"
[2026-01-10 18:43:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 18:43:31] ANSI_COLOR="0;31"
[2026-01-10 18:43:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 18:43:31] HOME_URL="https://www.centos.org/"
[2026-01-10 18:43:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 18:43:31] 
[2026-01-10 18:43:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 18:43:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 18:43:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 18:43:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 18:43:31] 
[2026-01-10 18:43:31] 2026-01-10 17:43:00,288 | INFO     | ***************************************
[2026-01-10 18:43:31] 2026-01-10 17:43:00,792 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 18:43:31] 2026-01-10 17:43:00,805 | INFO     | sufficient remaining disk space (369781374976 B)
[2026-01-10 18:43:31] 2026-01-10 17:43:00,805 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 18:43:31] 2026-01-10 17:43:00,805 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 18:43:31] 2026-01-10 17:43:00,806 | INFO     | update_server=False
[2026-01-10 18:43:31] 2026-01-10 17:43:00,806 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 18:43:31] 2026-01-10 17:43:00,806 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 18:43:31] 2026-01-10 17:43:01,171 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 18:43:31] 2026-01-10 17:43:01,171 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 18:43:31] 2026-01-10 17:43:01,171 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 18:43:31] 2026-01-10 17:43:01,172 | INFO     | will abort loop
[2026-01-10 18:43:31] 2026-01-10 17:43:01,189 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 18:43:31] 2026-01-10 17:43:01,536 | INFO     | all job control threads have been joined
[2026-01-10 18:43:31] 2026-01-10 17:43:01,665 | INFO     | all payload control threads have been joined
[2026-01-10 18:43:31] 2026-01-10 17:43:01,807 | INFO     | [job] queue monitor thread has finished
[2026-01-10 18:43:31] 2026-01-10 17:43:01,811 | INFO     | [job] retrieve thread has finished
[2026-01-10 18:43:31] 2026-01-10 17:43:01,845 | INFO     | all data control threads have been joined
[2026-01-10 18:43:31] 2026-01-10 17:43:02,049 | INFO     | [payload] validate_post thread has finished
[2026-01-10 18:43:31] 2026-01-10 17:43:02,177 | INFO     | [job] job monitor thread has finished
[2026-01-10 18:43:31] 2026-01-10 17:43:02,273 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 18:43:31] 2026-01-10 17:43:02,404 | INFO     | [data] copytool_in thread has finished
[2026-01-10 18:43:31] 2026-01-10 17:43:02,542 | INFO     | [job] control thread has finished
[2026-01-10 18:43:31] 2026-01-10 17:43:02,671 | INFO     | [payload] control thread has finished
[2026-01-10 18:43:31] 2026-01-10 17:43:02,713 | INFO     | [payload] failed_post thread has finished
[2026-01-10 18:43:31] 2026-01-10 17:43:02,851 | INFO     | [data] control thread has finished
[2026-01-10 18:43:31] 2026-01-10 17:43:02,852 | INFO     | [job] validate thread has finished
[2026-01-10 18:43:31] 2026-01-10 17:43:02,874 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 18:43:31] 2026-01-10 17:43:02,922 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 18:43:31] 2026-01-10 17:43:02,954 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 18:43:31] 2026-01-10 17:43:04,280 | INFO     | [data] copytool_out thread has finished
[2026-01-10 18:43:31] 2026-01-10 17:43:05,196 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 18:43:31] 2026-01-10 17:43:11,774 | INFO     | job.realtimelogging is not enabled
[2026-01-10 18:43:31] 2026-01-10 17:43:12,780 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 18:43:31] 2026-01-10 17:43:24,989 | INFO     | [monitor] cgroup control has ended
[2026-01-10 18:43:31] 2026-01-10 17:43:26,253 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139935014737728)>', '<ExcThread(monitor, started 139934379792128)>']
[2026-01-10 18:43:31] 2026-01-10 17:43:30,549 | INFO     | PID=2753597 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 18:43:31] 2026-01-10 17:43:30,549 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 18:43:31] 2026-01-10 17:43:30,549 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 18:43:31] 2026-01-10 17:43:30,549 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 18:43:31] 2026-01-10 17:43:30,549 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 18:43:31] 2026-01-10 17:43:30,549 | INFO     | [monitor] control thread has ended
[2026-01-10 18:43:31] 2026-01-10 17:43:31,279 | INFO     | all workflow threads have been joined
[2026-01-10 18:43:31] 2026-01-10 17:43:31,279 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 18:43:31] 2026-01-10 17:43:31,279 | INFO     | traces error code: 0
[2026-01-10 18:43:31] 2026-01-10 17:43:31,279 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 18:43:31] 2026-01-10 17:43:31,331 [wrapper] ==== pilot stdout END ====
[2026-01-10 18:43:31] 2026-01-10 17:43:31,334 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 18:43:31] 2026-01-10 17:43:31,336 [wrapper] pilotpid: 2753597
[2026-01-10 18:43:31] 2026-01-10 17:43:31,339 [wrapper] Pilot exit status: 0
[2026-01-10 18:43:31] 2026-01-10 17:43:31,347 [wrapper] pandaids: 6963190132
[2026-01-10 18:43:31] 2026-01-10 17:43:31,365 [wrapper] cleanup supervisor_pilot 2774439 2753598
[2026-01-10 18:43:31] 2026-01-10 17:43:31,367 [wrapper] Test setup, not cleaning
[2026-01-10 18:43:31] 2026-01-10 17:43:31,370 [wrapper] apfmon messages muted
[2026-01-10 18:43:31] 2026-01-10 17:43:31,372 [wrapper] ==== wrapper stdout END ====
[2026-01-10 18:43:31] 2026-01-10 17:43:31,375 [wrapper] ==== wrapper stderr END ====
[2026-01-10 18:43:31]  *** Error codes and diagnostics ***
[2026-01-10 18:43:31]     "exeErrorCode": 0,
[2026-01-10 18:43:31]     "exeErrorDiag": "",
[2026-01-10 18:43:31]     "pilotErrorCode": 0,
[2026-01-10 18:43:31]     "pilotErrorDiag": "",
[2026-01-10 18:43:31]  *** Listing of results directory ***
[2026-01-10 18:43:31] total 442536
[2026-01-10 18:43:31] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:21 queuedata.json
[2026-01-10 18:43:31] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 18:43:31] -rwx------ 1 boinc boinc     36322 Jan  9 05:22 runpilot2-wrapper.sh
[2026-01-10 18:43:31] -rw-r--r-- 1 boinc boinc       100 Jan 10 16:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 18:43:31] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 16:48 run_atlas
[2026-01-10 18:43:31] -rw-r--r-- 1 boinc boinc       105 Jan 10 16:48 job.xml
[2026-01-10 18:43:31] -rw-r--r-- 2 boinc boinc 224857037 Jan 10 16:48 EVNT.47898824._001487.pool.root.1
[2026-01-10 18:43:31] -rw-r--r-- 2 boinc boinc    592398 Jan 10 16:48 input.tar.gz
[2026-01-10 18:43:31] -rw-r--r-- 2 boinc boinc     15847 Jan 10 16:48 start_atlas.sh
[2026-01-10 18:43:31] drwxrwx--x 2 boinc boinc      4096 Jan 10 16:48 shared
[2026-01-10 18:43:31] -rw-r--r-- 1 boinc boinc         0 Jan 10 16:48 boinc_setup_complete
[2026-01-10 18:43:31] -rw-r--r-- 1 boinc boinc      6443 Jan 10 16:48 init_data.xml
[2026-01-10 18:43:31] -rw-r--r-- 1 boinc boinc         0 Jan 10 16:48 boinc_lockfile
[2026-01-10 18:43:31] -rw-r--r-- 1 boinc boinc      2520 Jan 10 16:48 pandaJob.out
[2026-01-10 18:43:31] -rw------- 1 boinc boinc    989556 Jan 10 16:48 agis_schedconf.cvmfs.json
[2026-01-10 18:43:31] -rw------- 1 boinc boinc   1516240 Jan 10 16:48 agis_ddmendpoints.agis.ALL.json
[2026-01-10 18:43:31] drwx------ 5 boinc boinc      4096 Jan 10 16:48 pilot3
[2026-01-10 18:43:31] -rw------- 1 boinc boinc 221819598 Jan 10 18:42 HITS.47898826._038717.pool.root.1
[2026-01-10 18:43:31] -rw-r--r-- 1 boinc boinc       529 Jan 10 18:42 boinc_task_state.xml
[2026-01-10 18:43:31] -rw------- 1 boinc boinc      1016 Jan 10 18:42 memory_monitor_summary.json
[2026-01-10 18:43:31] -rw------- 1 boinc boinc        95 Jan 10 18:42 pilot_heartbeat.json
[2026-01-10 18:43:31] -rw------- 1 boinc boinc    287422 Jan 10 18:42 log.47898826._038717.job.log.tgz.1
[2026-01-10 18:43:31] -rw------- 1 boinc boinc      7754 Jan 10 18:42 heartbeat.json
[2026-01-10 18:43:31] -rw-r--r-- 1 boinc boinc      8192 Jan 10 18:43 boinc_mmap_file
[2026-01-10 18:43:31] -rw-r--r-- 1 boinc boinc        27 Jan 10 18:43 wrapper_checkpoint.txt
[2026-01-10 18:43:31] -rw------- 1 boinc boinc      5010 Jan 10 18:43 pilotlog.txt
[2026-01-10 18:43:31] -rw------- 1 boinc boinc    992977 Jan 10 18:43 log.47898826._038717.job.log.1
[2026-01-10 18:43:31] -rw------- 1 boinc boinc       357 Jan 10 18:43 output.list
[2026-01-10 18:43:31] -rw-r--r-- 1 boinc boinc       620 Jan 10 18:43 runtime_log
[2026-01-10 18:43:31] -rw------- 1 boinc boinc   1300480 Jan 10 18:43 result.tar.gz
[2026-01-10 18:43:31] -rw-r--r-- 1 boinc boinc      8912 Jan 10 18:43 runtime_log.err
[2026-01-10 18:43:31] -rw------- 1 boinc boinc       662 Jan 10 18:43 SwPNDmRCJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKwgKDmPSwadn.diag
[2026-01-10 18:43:31] -rw-r--r-- 1 boinc boinc     21273 Jan 10 18:43 stderr.txt
[2026-01-10 18:43:31] HITS file was successfully produced:
[2026-01-10 18:43:31] -rw------- 1 boinc boinc 221819598 Jan 10 18:42 shared/HITS.pool.root.1
[2026-01-10 18:43:31]  *** Contents of shared directory: ***
[2026-01-10 18:43:31] total 438088
[2026-01-10 18:43:31] -rw-r--r-- 2 boinc boinc 224857037 Jan 10 16:48 ATLAS.root_0
[2026-01-10 18:43:31] -rw-r--r-- 2 boinc boinc    592398 Jan 10 16:48 input.tar.gz
[2026-01-10 18:43:31] -rw-r--r-- 2 boinc boinc     15847 Jan 10 16:48 start_atlas.sh
[2026-01-10 18:43:31] -rw------- 1 boinc boinc 221819598 Jan 10 18:42 HITS.pool.root.1
[2026-01-10 18:43:31] -rw------- 1 boinc boinc   1300480 Jan 10 18:43 result.tar.gz
18:43:32 (2749875): run_atlas exited; CPU time 19946.025350
18:43:32 (2749875): called boinc_finish(0)

</stderr_txt>
]]>

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