Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:38:51 (3742377): wrapper (7.7.26015): starting
09:38:51 (3742377): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 09:38:51] Arguments: --nthreads 3
[2026-01-10 09:38:51] Threads: 3
[2026-01-10 09:38:51] Checking for CVMFS
[2026-01-10 09:38:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 09:38:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 09:38:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 09:38:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 09:38:52] 2.9.2.0 2900183 3443 85916 154973 0 57 21272878 36864000 0 130560 0 2130863 99.988 124978 6561 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 09:38:52] CVMFS is ok
[2026-01-10 09:38:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 09:38:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 09:38:52] Further information can be found at the LHC@home message board.
[2026-01-10 09:38:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 09:38:52] Checking for apptainer binary...
[2026-01-10 09:38:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 09:38:52] Running /usr/bin/apptainer --version
[2026-01-10 09:38:52] apptainer version 1.4.1-1.1
[2026-01-10 09:38:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 09:38:52] thA312a
[2026-01-10 09:38:52] apptainer works
[2026-01-10 09:38:52] Set ATHENA_PROC_NUMBER=3
[2026-01-10 09:38:52] Set ATHENA_CORE_NUMBER=3
[2026-01-10 09:38:52] Starting ATLAS job with PandaID=6963189345
[2026-01-10 09:38:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 11:30:12]  *** The last 200 lines of the pilot log: ***
[2026-01-10 11:30:12] 2026-01-10 10:29:29,584 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 11:30:12] 2026-01-10 10:29:29,584 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 11:30:12] 2026-01-10 10:29:29,584 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 11:30:12] 2026-01-10 10:29:29,584 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 11:30:12] 2026-01-10 10:29:29,584 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 11:30:12] 2026-01-10 10:29:29,584 | INFO     | job 6963189345 has completed (purged errors)
[2026-01-10 11:30:12] 2026-01-10 10:29:29,584 | INFO     | overall cleanup function is called
[2026-01-10 11:30:12] 2026-01-10 10:29:30,590 | INFO     | --- collectZombieJob: --- 10, [3752551]
[2026-01-10 11:30:12] 2026-01-10 10:29:30,591 | INFO     | zombie collector waiting for pid 3752551
[2026-01-10 11:30:12] 2026-01-10 10:29:30,591 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 11:30:12] 2026-01-10 10:29:30,591 | INFO     | collected zombie processes
[2026-01-10 11:30:12] 2026-01-10 10:29:30,591 | INFO     | will attempt to kill all subprocesses of pid=3752551
[2026-01-10 11:30:12] 2026-01-10 10:29:30,640 | INFO     | process IDs to be killed: [3752551] (in reverse order)
[2026-01-10 11:30:12] 2026-01-10 10:29:30,669 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 11:30:12] 2026-01-10 10:29:30,669 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 11:30:12] 2026-01-10 10:29:30,670 | INFO     | did not find any defunct processes belonging to 3752551
[2026-01-10 11:30:12] 2026-01-10 10:29:30,671 | INFO     | did not find any defunct processes belonging to 3752551
[2026-01-10 11:30:12] 2026-01-10 10:29:30,671 | INFO     | ready for new job
[2026-01-10 11:30:12] 2026-01-10 10:29:30,672 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 11:30:12] 2026-01-10 10:29:30,672 | INFO     | ***************************************
[2026-01-10 11:30:12] 2026-01-10 10:29:30,672 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 11:30:12] 2026-01-10 10:29:30,672 | INFO     | ***************************************
[2026-01-10 11:30:12] 2026-01-10 10:29:30,672 | INFO     | 
[2026-01-10 11:30:12] 2026-01-10 10:29:30,673 | INFO     | architecture information:
[2026-01-10 11:30:12] 2026-01-10 10:29:30,673 | INFO     | executing command: cat /etc/os-release
[2026-01-10 11:30:12] 2026-01-10 10:29:30,682 | INFO     | cat /etc/os-release:
[2026-01-10 11:30:12] NAME="CentOS Linux"
[2026-01-10 11:30:12] VERSION="7 (Core)"
[2026-01-10 11:30:12] ID="centos"
[2026-01-10 11:30:12] ID_LIKE="rhel fedora"
[2026-01-10 11:30:12] VERSION_ID="7"
[2026-01-10 11:30:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 11:30:12] ANSI_COLOR="0;31"
[2026-01-10 11:30:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 11:30:12] HOME_URL="https://www.centos.org/"
[2026-01-10 11:30:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 11:30:12] 
[2026-01-10 11:30:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 11:30:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 11:30:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 11:30:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 11:30:12] 
[2026-01-10 11:30:12] 2026-01-10 10:29:30,683 | INFO     | ***************************************
[2026-01-10 11:30:12] 2026-01-10 10:29:31,186 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 11:30:12] 2026-01-10 10:29:31,200 | INFO     | sufficient remaining disk space (284325576704 B)
[2026-01-10 11:30:12] 2026-01-10 10:29:31,200 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 11:30:12] 2026-01-10 10:29:31,200 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 11:30:12] 2026-01-10 10:29:31,200 | INFO     | update_server=False
[2026-01-10 11:30:12] 2026-01-10 10:29:31,200 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 11:30:12] 2026-01-10 10:29:31,201 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 11:30:12] 2026-01-10 10:29:31,201 | INFO     | aborting loop
[2026-01-10 11:30:12] 2026-01-10 10:29:31,201 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 11:30:12] 2026-01-10 10:29:32,127 | INFO     | all data control threads have been joined
[2026-01-10 11:30:12] 2026-01-10 10:29:32,156 | INFO     | all payload control threads have been joined
[2026-01-10 11:30:12] 2026-01-10 10:29:32,206 | INFO     | [job] job monitor thread has finished
[2026-01-10 11:30:12] 2026-01-10 10:29:32,206 | INFO     | [job] retrieve thread has finished
[2026-01-10 11:30:12] 2026-01-10 10:29:32,207 | INFO     | [job] queue monitor thread has finished
[2026-01-10 11:30:12] 2026-01-10 10:29:32,383 | INFO     | [payload] validate_post thread has finished
[2026-01-10 11:30:12] 2026-01-10 10:29:32,428 | INFO     | [payload] failed_post thread has finished
[2026-01-10 11:30:12] 2026-01-10 10:29:32,432 | INFO     | all job control threads have been joined
[2026-01-10 11:30:12] 2026-01-10 10:29:32,628 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 11:30:12] 2026-01-10 10:29:33,078 | INFO     | [data] copytool_in thread has finished
[2026-01-10 11:30:12] 2026-01-10 10:29:33,132 | INFO     | [data] control thread has finished
[2026-01-10 11:30:12] 2026-01-10 10:29:33,161 | INFO     | [payload] control thread has finished
[2026-01-10 11:30:12] 2026-01-10 10:29:33,252 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 11:30:12] 2026-01-10 10:29:33,311 | INFO     | [job] validate thread has finished
[2026-01-10 11:30:12] 2026-01-10 10:29:33,356 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 11:30:12] 2026-01-10 10:29:33,360 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 11:30:12] 2026-01-10 10:29:33,438 | INFO     | [job] control thread has finished
[2026-01-10 11:30:12] 2026-01-10 10:29:34,542 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 11:30:12] 2026-01-10 10:29:34,634 | INFO     | [data] copytool_out thread has finished
[2026-01-10 11:30:12] 2026-01-10 10:29:38,549 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 11:30:12] 2026-01-10 10:29:41,591 | INFO     | job.realtimelogging is not enabled
[2026-01-10 11:30:12] 2026-01-10 10:29:42,596 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 11:30:12] 2026-01-10 10:30:01,436 | INFO     | PID=3746100 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 11:30:12] 2026-01-10 10:30:01,436 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 11:30:12] 2026-01-10 10:30:01,436 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 11:30:12] 2026-01-10 10:30:01,436 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 11:30:12] 2026-01-10 10:30:06,175 | INFO     | [monitor] cgroup control has ended
[2026-01-10 11:30:12] 2026-01-10 10:30:07,181 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139730048010048)>', '<ExcThread(monitor, started 139729404143360)>']
[2026-01-10 11:30:12] 2026-01-10 10:30:07,465 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 11:30:12] 2026-01-10 10:30:07,466 | INFO     | [monitor] control thread has ended
[2026-01-10 11:30:12] 2026-01-10 10:30:12,196 | INFO     | all workflow threads have been joined
[2026-01-10 11:30:12] 2026-01-10 10:30:12,196 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 11:30:12] 2026-01-10 10:30:12,196 | INFO     | traces error code: 0
[2026-01-10 11:30:12] 2026-01-10 10:30:12,196 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 11:30:12] 2026-01-10 10:30:12,247 [wrapper] ==== pilot stdout END ====
[2026-01-10 11:30:12] 2026-01-10 10:30:12,250 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 11:30:12] 2026-01-10 10:30:12,252 [wrapper] pilotpid: 3746100
[2026-01-10 11:30:12] 2026-01-10 10:30:12,255 [wrapper] Pilot exit status: 0
[2026-01-10 11:30:12] 2026-01-10 10:30:12,262 [wrapper] pandaids: 6963189345
[2026-01-10 11:30:12] 2026-01-10 10:30:12,281 [wrapper] cleanup supervisor_pilot 3767713 3746101
[2026-01-10 11:30:12] 2026-01-10 10:30:12,284 [wrapper] Test setup, not cleaning
[2026-01-10 11:30:12] 2026-01-10 10:30:12,286 [wrapper] apfmon messages muted
[2026-01-10 11:30:12] 2026-01-10 10:30:12,288 [wrapper] ==== wrapper stdout END ====
[2026-01-10 11:30:12] 2026-01-10 10:30:12,291 [wrapper] ==== wrapper stderr END ====
[2026-01-10 11:30:12]  *** Error codes and diagnostics ***
[2026-01-10 11:30:12]     "exeErrorCode": 0,
[2026-01-10 11:30:12]     "exeErrorDiag": "",
[2026-01-10 11:30:12]     "pilotErrorCode": 0,
[2026-01-10 11:30:12]     "pilotErrorDiag": "",
[2026-01-10 11:30:12]  *** Listing of results directory ***
[2026-01-10 11:30:12] total 436196
[2026-01-10 11:30:12] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:21 queuedata.json
[2026-01-10 11:30:12] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 11:30:12] -rwx------ 1 boinc boinc     36322 Jan  9 05:22 runpilot2-wrapper.sh
[2026-01-10 11:30:12] -rw-r--r-- 1 boinc boinc       100 Jan 10 09:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 11:30:12] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 09:38 run_atlas
[2026-01-10 11:30:12] -rw-r--r-- 1 boinc boinc       105 Jan 10 09:38 job.xml
[2026-01-10 11:30:12] -rw-r--r-- 2 boinc boinc 226042927 Jan 10 09:38 EVNT.47898824._001468.pool.root.1
[2026-01-10 11:30:12] drwxrwx--x 2 boinc boinc      4096 Jan 10 09:38 shared
[2026-01-10 11:30:12] -rw-r--r-- 2 boinc boinc    592394 Jan 10 09:38 input.tar.gz
[2026-01-10 11:30:12] -rw-r--r-- 2 boinc boinc     15847 Jan 10 09:38 start_atlas.sh
[2026-01-10 11:30:12] -rw-r--r-- 1 boinc boinc         0 Jan 10 09:38 boinc_setup_complete
[2026-01-10 11:30:12] -rw-r--r-- 1 boinc boinc      6447 Jan 10 09:38 init_data.xml
[2026-01-10 11:30:12] -rw-r--r-- 1 boinc boinc         0 Jan 10 09:38 boinc_lockfile
[2026-01-10 11:30:12] -rw-r--r-- 1 boinc boinc      2519 Jan 10 09:38 pandaJob.out
[2026-01-10 11:30:12] -rw------- 1 boinc boinc    989548 Jan 10 09:38 agis_schedconf.cvmfs.json
[2026-01-10 11:30:12] -rw------- 1 boinc boinc   1516240 Jan 10 09:38 agis_ddmendpoints.agis.ALL.json
[2026-01-10 11:30:12] drwx------ 5 boinc boinc      4096 Jan 10 09:38 pilot3
[2026-01-10 11:30:12] -rw------- 1 boinc boinc 214273593 Jan 10 11:29 HITS.47898826._038227.pool.root.1
[2026-01-10 11:30:12] -rw-r--r-- 1 boinc boinc       529 Jan 10 11:29 boinc_task_state.xml
[2026-01-10 11:30:12] -rw------- 1 boinc boinc      1017 Jan 10 11:29 memory_monitor_summary.json
[2026-01-10 11:30:12] -rw------- 1 boinc boinc    266380 Jan 10 11:29 log.47898826._038227.job.log.tgz.1
[2026-01-10 11:30:12] -rw------- 1 boinc boinc      7766 Jan 10 11:29 heartbeat.json
[2026-01-10 11:30:12] -rw-r--r-- 1 boinc boinc        27 Jan 10 11:29 wrapper_checkpoint.txt
[2026-01-10 11:30:12] -rw-r--r-- 1 boinc boinc      8192 Jan 10 11:29 boinc_mmap_file
[2026-01-10 11:30:12] -rw------- 1 boinc boinc        95 Jan 10 11:30 pilot_heartbeat.json
[2026-01-10 11:30:12] -rw------- 1 boinc boinc      4824 Jan 10 11:30 pilotlog.txt
[2026-01-10 11:30:12] -rw------- 1 boinc boinc    957893 Jan 10 11:30 log.47898826._038227.job.log.1
[2026-01-10 11:30:12] -rw------- 1 boinc boinc       357 Jan 10 11:30 output.list
[2026-01-10 11:30:12] -rw-r--r-- 1 boinc boinc       620 Jan 10 11:30 runtime_log
[2026-01-10 11:30:12] -rw------- 1 boinc boinc   1239040 Jan 10 11:30 result.tar.gz
[2026-01-10 11:30:12] -rw-r--r-- 1 boinc boinc      8902 Jan 10 11:30 runtime_log.err
[2026-01-10 11:30:12] -rw------- 1 boinc boinc       660 Jan 10 11:30 DjoLDmECJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmzugKDmzkGOcn.diag
[2026-01-10 11:30:12] -rw-r--r-- 1 boinc boinc     11411 Jan 10 11:30 stderr.txt
[2026-01-10 11:30:12] HITS file was successfully produced:
[2026-01-10 11:30:12] -rw------- 1 boinc boinc 214273593 Jan 10 11:29 shared/HITS.pool.root.1
[2026-01-10 11:30:12]  *** Contents of shared directory: ***
[2026-01-10 11:30:12] total 431816
[2026-01-10 11:30:12] -rw-r--r-- 2 boinc boinc 226042927 Jan 10 09:38 ATLAS.root_0
[2026-01-10 11:30:12] -rw-r--r-- 2 boinc boinc    592394 Jan 10 09:38 input.tar.gz
[2026-01-10 11:30:12] -rw-r--r-- 2 boinc boinc     15847 Jan 10 09:38 start_atlas.sh
[2026-01-10 11:30:12] -rw------- 1 boinc boinc 214273593 Jan 10 11:29 HITS.pool.root.1
[2026-01-10 11:30:12] -rw------- 1 boinc boinc   1239040 Jan 10 11:30 result.tar.gz
11:30:14 (3742377): run_atlas exited; CPU time 19115.729224
11:30:14 (3742377): called boinc_finish(0)

</stderr_txt>
]]>

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