Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:46:51 (2665505): wrapper (7.7.26015): starting
15:46:51 (2665505): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 15:46:51] Arguments: --nthreads 9
[2026-01-09 15:46:51] Threads: 9
[2026-01-09 15:46:51] Checking for CVMFS
[2026-01-09 15:46:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 15:46:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 15:46:52] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 15:46:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 15:46:54] 2.13.3.0 6968 23376 224556 154956 1 416 22770733 40960001 20774 16776704 0 82347353 99.595 88741364 34838 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 15:46:54] CVMFS is ok
[2026-01-09 15:46:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 15:46:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 15:46:54] Further information can be found at the LHC@home message board.
[2026-01-09 15:46:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 15:46:54] Checking for apptainer binary...
[2026-01-09 15:46:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 15:46:54] Running /usr/bin/apptainer --version
[2026-01-09 15:46:54] apptainer version 1.4.5-2.el9
[2026-01-09 15:46:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 15:46:54] c-212-5.aglt2.org
[2026-01-09 15:46:54] apptainer works
[2026-01-09 15:46:54] Set ATHENA_PROC_NUMBER=9
[2026-01-09 15:46:54] Set ATHENA_CORE_NUMBER=9
[2026-01-09 15:46:55] Starting ATLAS job with PandaID=6963189216
[2026-01-09 15:46:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:40:05 (2665505): BOINC client no longer exists - exiting
20:40:05 (2665505): timer handler: client dead, exiting
20:47:14 (3724085): wrapper (7.7.26015): starting
20:47:14 (3724085): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 20:47:14] Arguments: --nthreads 9
[2026-01-09 20:47:14] Threads: 9
[2026-01-09 20:47:14] This job has been restarted, cleaning up previous attempt
[2026-01-09 20:47:14] Checking for CVMFS
[2026-01-09 20:47:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 20:47:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 20:47:14] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 20:47:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 20:47:14] 2.13.3.0 6968 23676 215760 154963 1 177 24914821 40960001 17033 16776704 0 83055921 99.598 88815779 34833 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 20:47:14] CVMFS is ok
[2026-01-09 20:47:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 20:47:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 20:47:14] Further information can be found at the LHC@home message board.
[2026-01-09 20:47:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 20:47:14] Checking for apptainer binary...
[2026-01-09 20:47:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 20:47:14] Running /usr/bin/apptainer --version
[2026-01-09 20:47:14] apptainer version 1.4.5-2.el9
[2026-01-09 20:47:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 20:47:15] c-212-5.aglt2.org
[2026-01-09 20:47:15] apptainer works
[2026-01-09 20:47:15] Set ATHENA_PROC_NUMBER=9
[2026-01-09 20:47:15] Set ATHENA_CORE_NUMBER=9
[2026-01-09 20:47:15] Starting ATLAS job with PandaID=6963189216
[2026-01-09 20:47:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 22:42:47]  *** The last 200 lines of the pilot log: ***
[2026-01-09 22:42:47] 2026-01-10 03:41:35,815 | INFO     | time since job start (6845s) is within the limit (349056.0s)
[2026-01-09 22:42:47] 2026-01-10 03:41:37,821 | INFO     | time since job start (6847s) is within the limit (349056.0s)
[2026-01-09 22:42:47] 2026-01-10 03:41:38,189 | INFO     | monitor loop #461: job 0:6963189216 is in state 'finished'
[2026-01-09 22:42:47] 2026-01-10 03:41:38,190 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 22:42:47] 2026-01-10 03:41:39,826 | INFO     | time since job start (6849s) is within the limit (349056.0s)
[2026-01-09 22:42:47] 2026-01-10 03:41:40,693 | INFO     | monitor loop #462: job 0:6963189216 is in state 'finished'
[2026-01-09 22:42:47] 2026-01-10 03:41:40,693 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 22:42:47] 2026-01-10 03:41:41,833 | INFO     | time since job start (6851s) is within the limit (349056.0s)
[2026-01-09 22:42:47] 2026-01-10 03:41:42,181 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 22:42:47] 2026-01-10 03:41:42,186 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3237.229364583334
[2026-01-09 22:42:47] 2026-01-10 03:41:42,199 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963189216/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 22:42:47] 2026-01-10 03:41:42,199 | INFO     | extracted standard info from prmon json
[2026-01-09 22:42:47] 2026-01-10 03:41:42,200 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 22:42:47] 2026-01-10 03:41:42,200 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 22:42:47] 2026-01-10 03:41:42,200 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 22:42:47] 2026-01-10 03:41:42,200 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 22:42:47] 2026-01-10 03:41:42,202 | INFO     | fitting pss+swap vs Time
[2026-01-09 22:42:47] 2026-01-10 03:41:42,202 | INFO     | sum of square deviations: 435616317.5625
[2026-01-09 22:42:47] 2026-01-10 03:41:42,203 | INFO     | sum of deviations: 10664883896.812496
[2026-01-09 22:42:47] 2026-01-10 03:41:42,203 | INFO     | mean x: 1768013070.5625
[2026-01-09 22:42:47] 2026-01-10 03:41:42,203 | INFO     | mean y: 2548295.6696428573
[2026-01-09 22:42:47] 2026-01-10 03:41:42,203 | INFO     | intersect: -43282455882.09675
[2026-01-09 22:42:47] 2026-01-10 03:41:42,203 | INFO     | chi2: 1.4407780645423527
[2026-01-09 22:42:47] 2026-01-10 03:41:42,203 | INFO     | sum of square deviations: 379840662.5420554
[2026-01-09 22:42:47] 2026-01-10 03:41:42,204 | INFO     | sum of deviations: 10207169939.794394
[2026-01-09 22:42:47] 2026-01-10 03:41:42,204 | INFO     | mean x: 1768012918.0654206
[2026-01-09 22:42:47] 2026-01-10 03:41:42,204 | INFO     | mean y: 2547049.457943925
[2026-01-09 22:42:47] 2026-01-10 03:41:42,204 | INFO     | intersect: -47507922708.232765
[2026-01-09 22:42:47] 2026-01-10 03:41:42,204 | INFO     | chi2: 1.4435575061289898
[2026-01-09 22:42:47] 2026-01-10 03:41:42,204 | INFO     | current chi2=1.4435575061289898 (change=-0.1929125418438391 %)
[2026-01-09 22:42:47] 2026-01-10 03:41:42,204 | INFO     | right removable region: 106
[2026-01-09 22:42:47] 2026-01-10 03:41:42,204 | INFO     | sum of square deviations: 379836392.5420554
[2026-01-09 22:42:47] 2026-01-10 03:41:42,205 | INFO     | sum of deviations: -5871537391.607476
[2026-01-09 22:42:47] 2026-01-10 03:41:42,205 | INFO     | mean x: 1768013223.0654206
[2026-01-09 22:42:47] 2026-01-10 03:41:42,205 | INFO     | mean y: 2592564.9439252336
[2026-01-09 22:42:47] 2026-01-10 03:41:42,205 | INFO     | intersect: 27332664016.524723
[2026-01-09 22:42:47] 2026-01-10 03:41:42,205 | INFO     | chi2: 0.032358158762428764
[2026-01-09 22:42:47] 2026-01-10 03:41:42,205 | INFO     | current chi2=0.032358158762428764 (change=97.75411914168008 %)
[2026-01-09 22:42:47] 2026-01-10 03:41:42,205 | INFO     | sum of square deviations: 329033305.01960844
[2026-01-09 22:42:47] 2026-01-10 03:41:42,206 | INFO     | sum of deviations: -5020674225.882352
[2026-01-09 22:42:47] 2026-01-10 03:41:42,206 | INFO     | mean x: 1768013375.5686274
[2026-01-09 22:42:47] 2026-01-10 03:41:42,206 | INFO     | mean y: 2589976.911764706
[2026-01-09 22:42:47] 2026-01-10 03:41:42,206 | INFO     | intersect: 26980464405.774426
[2026-01-09 22:42:47] 2026-01-10 03:41:42,206 | INFO     | chi2: 0.03166283505756278
[2026-01-09 22:42:47] 2026-01-10 03:41:42,206 | INFO     | current chi2=0.03166283505756278 (change=2.1488358159405747 %)
[2026-01-09 22:42:47] 2026-01-10 03:41:42,206 | INFO     | left removable region: 20
[2026-01-09 22:42:47] 2026-01-10 03:41:42,206 | INFO     | sum of square deviations: 197204008.93023226
[2026-01-09 22:42:47] 2026-01-10 03:41:42,207 | INFO     | sum of deviations: -1563167748.3023262
[2026-01-09 22:42:47] 2026-01-10 03:41:42,207 | INFO     | mean x: 1768013497.5813954
[2026-01-09 22:42:47] 2026-01-10 03:41:42,207 | INFO     | mean y: 2578255.6860465114
[2026-01-09 22:42:47] 2026-01-10 03:41:42,207 | INFO     | intersect: 14017007744.08547
[2026-01-09 22:42:47] 2026-01-10 03:41:42,207 | INFO     | chi2: 0.021335772301199315
[2026-01-09 22:42:47] 2026-01-10 03:41:42,207 | INFO     | current memory leak: -7.93 B/s (using 86 data points, chi2=0.02)
[2026-01-09 22:42:47] 2026-01-10 03:41:42,207 | INFO     | could have reported an average CPU frequency of 3232 MHz (7 samples)
[2026-01-09 22:42:47] 2026-01-10 03:41:42,207 | INFO     | ..............................
[2026-01-09 22:42:47] 2026-01-10 03:41:42,207 | INFO     | . Timing measurements:
[2026-01-09 22:42:47] 2026-01-10 03:41:42,208 | INFO     | . get job = 0 s
[2026-01-09 22:42:47] 2026-01-10 03:41:42,208 | INFO     | . initial setup = 2 s
[2026-01-09 22:42:47] 2026-01-10 03:41:42,208 | INFO     | . payload setup = 8 s
[2026-01-09 22:42:47] 2026-01-10 03:41:42,208 | INFO     | . stage-in = 0 s
[2026-01-09 22:42:47] 2026-01-10 03:41:42,208 | INFO     | . payload execution = 6809 s
[2026-01-09 22:42:47] 2026-01-10 03:41:42,208 | INFO     | . stage-out = 0 s
[2026-01-09 22:42:47] 2026-01-10 03:41:42,208 | INFO     | . log creation = 0 s
[2026-01-09 22:42:47] 2026-01-10 03:41:42,208 | INFO     | ..............................
[2026-01-09 22:42:47] 2026-01-10 03:41:42,457 | INFO     | 
[2026-01-09 22:42:47] 2026-01-10 03:41:42,458 | INFO     | job summary report
[2026-01-09 22:42:47] 2026-01-10 03:41:42,458 | INFO     | --------------------------------------------------
[2026-01-09 22:42:47] 2026-01-10 03:41:42,458 | INFO     | PanDA job id: 6963189216
[2026-01-09 22:42:47] 2026-01-10 03:41:42,458 | INFO     | task id: 47898826
[2026-01-09 22:42:47] 2026-01-10 03:41:42,458 | INFO     | errors: (none)
[2026-01-09 22:42:47] 2026-01-10 03:41:42,458 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 22:42:47] 2026-01-10 03:41:42,458 | INFO     | pilot state: finished 
[2026-01-09 22:42:47] 2026-01-10 03:41:42,458 | INFO     | transexitcode: 0
[2026-01-09 22:42:47] 2026-01-10 03:41:42,458 | INFO     | exeerrorcode: 0
[2026-01-09 22:42:47] 2026-01-10 03:41:42,458 | INFO     | exeerrordiag: 
[2026-01-09 22:42:47] 2026-01-10 03:41:42,458 | INFO     | exitcode: 0
[2026-01-09 22:42:47] 2026-01-10 03:41:42,458 | INFO     | exitmsg: OK
[2026-01-09 22:42:47] 2026-01-10 03:41:42,458 | INFO     | cpuconsumptiontime: 43698 s
[2026-01-09 22:42:47] 2026-01-10 03:41:42,458 | INFO     | nevents: 400
[2026-01-09 22:42:47] 2026-01-10 03:41:42,459 | INFO     | neventsw: 0
[2026-01-09 22:42:47] 2026-01-10 03:41:42,459 | INFO     | pid: 3766742
[2026-01-09 22:42:47] 2026-01-10 03:41:42,459 | INFO     | pgrp: 3766742
[2026-01-09 22:42:47] 2026-01-10 03:41:42,459 | INFO     | corecount: 9
[2026-01-09 22:42:47] 2026-01-10 03:41:42,459 | INFO     | event service: False
[2026-01-09 22:42:47] 2026-01-10 03:41:42,459 | INFO     | sizes: {0: 2283971, 6: 2284233, 11: 2284261, 6821: 2311507, 6824: 2320561, 6834: 2320699}
[2026-01-09 22:42:47] 2026-01-10 03:41:42,459 | INFO     | --------------------------------------------------
[2026-01-09 22:42:47] 2026-01-10 03:41:42,459 | INFO     | 
[2026-01-09 22:42:47] 2026-01-10 03:41:42,459 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-09 22:42:47] 2026-01-10 03:41:42,614 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 22:42:47] 2026-01-10 03:41:42,614 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 22:42:47] 2026-01-10 03:41:42,614 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 22:42:47] 2026-01-10 03:41:42,614 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 22:42:47] 2026-01-10 03:41:42,614 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 22:42:47] 2026-01-10 03:41:42,614 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 22:42:47] 2026-01-10 03:41:42,614 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 22:42:47] 2026-01-10 03:41:42,614 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 22:42:47] 2026-01-10 03:41:42,614 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 22:42:47] 2026-01-10 03:41:42,614 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 22:42:47] 2026-01-10 03:41:42,614 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 22:42:47] 2026-01-10 03:41:42,615 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 22:42:47] 2026-01-10 03:41:42,615 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 22:42:47] 2026-01-10 03:41:42,615 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 22:42:47] 2026-01-10 03:41:42,615 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 22:42:47] 2026-01-10 03:41:42,615 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 22:42:47] 2026-01-10 03:41:42,615 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 22:42:47] 2026-01-10 03:41:42,615 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 22:42:47] 2026-01-10 03:41:42,615 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 22:42:47] 2026-01-10 03:41:42,615 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 22:42:47] 2026-01-10 03:41:42,615 | INFO     | job 6963189216 has completed (purged errors)
[2026-01-09 22:42:47] 2026-01-10 03:41:42,615 | INFO     | overall cleanup function is called
[2026-01-09 22:42:47] 2026-01-10 03:41:43,625 | INFO     | --- collectZombieJob: --- 10, [3766742]
[2026-01-09 22:42:47] 2026-01-10 03:41:43,625 | INFO     | zombie collector waiting for pid 3766742
[2026-01-09 22:42:47] 2026-01-10 03:41:43,625 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 22:42:47] 2026-01-10 03:41:43,626 | INFO     | collected zombie processes
[2026-01-09 22:42:47] 2026-01-10 03:41:43,626 | INFO     | will attempt to kill all subprocesses of pid=3766742
[2026-01-09 22:42:47] 2026-01-10 03:41:44,059 | INFO     | process IDs to be killed: [3766742] (in reverse order)
[2026-01-09 22:42:47] 2026-01-10 03:41:44,204 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 22:42:47] 2026-01-10 03:41:44,204 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 22:42:47] 2026-01-10 03:41:44,223 | INFO     | did not find any defunct processes belonging to 3766742
[2026-01-09 22:42:47] 2026-01-10 03:41:44,239 | INFO     | did not find any defunct processes belonging to 3766742
[2026-01-09 22:42:47] 2026-01-10 03:41:44,239 | INFO     | ready for new job
[2026-01-09 22:42:47] 2026-01-10 03:41:44,239 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 22:42:47] 2026-01-10 03:41:44,240 | INFO     | ***************************************
[2026-01-09 22:42:47] 2026-01-10 03:41:44,240 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 22:42:47] 2026-01-10 03:41:44,240 | INFO     | ***************************************
[2026-01-09 22:42:47] 2026-01-10 03:41:44,240 | INFO     | 
[2026-01-09 22:42:47] 2026-01-10 03:41:44,243 | INFO     | architecture information:
[2026-01-09 22:42:47] 2026-01-10 03:41:44,244 | INFO     | executing command: cat /etc/os-release
[2026-01-09 22:42:47] 2026-01-10 03:41:44,254 | INFO     | cat /etc/os-release:
[2026-01-09 22:42:47] NAME="CentOS Linux"
[2026-01-09 22:42:47] VERSION="7 (Core)"
[2026-01-09 22:42:47] ID="centos"
[2026-01-09 22:42:47] ID_LIKE="rhel fedora"
[2026-01-09 22:42:47] VERSION_ID="7"
[2026-01-09 22:42:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 22:42:47] ANSI_COLOR="0;31"
[2026-01-09 22:42:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 22:42:47] HOME_URL="https://www.centos.org/"
[2026-01-09 22:42:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 22:42:47] 
[2026-01-09 22:42:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 22:42:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 22:42:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 22:42:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 22:42:47] 
[2026-01-09 22:42:47] 2026-01-10 03:41:44,255 | INFO     | ***************************************
[2026-01-09 22:42:47] 2026-01-10 03:41:44,760 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-09 22:42:47] 2026-01-10 03:41:44,842 | INFO     | sufficient remaining disk space (127371575296 B)
[2026-01-09 22:42:47] 2026-01-10 03:41:44,842 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 22:42:47] 2026-01-10 03:41:44,842 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 22:42:47] 2026-01-10 03:41:44,842 | INFO     | update_server=False
[2026-01-09 22:42:47] 2026-01-10 03:41:44,842 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 22:42:47] 2026-01-10 03:41:44,843 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:42:47] 2026-01-10 03:41:44,843 | INFO     | aborting loop
[2026-01-09 22:42:47] 2026-01-10 03:41:44,843 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 22:42:47] 2026-01-10 03:41:44,909 | INFO     | all job control threads have been joined
[2026-01-09 22:42:47] 2026-01-10 03:41:44,970 | INFO     | all data control threads have been joined
[2026-01-09 22:42:47] 2026-01-10 03:41:45,077 | INFO     | all payload control threads have been joined
[2026-01-09 22:42:47] 2026-01-10 03:41:45,847 | INFO     | [job] retrieve thread has finished
[2026-01-09 22:42:47] 2026-01-10 03:41:45,848 | INFO     | [job] job monitor thread has finished
[2026-01-09 22:42:47] 2026-01-10 03:41:45,906 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 22:42:47] 2026-01-10 03:41:45,914 | INFO     | [job] control thread has finished
[2026-01-09 22:42:47] 2026-01-10 03:41:45,975 | INFO     | [data] control thread has finished
[2026-01-09 22:42:47] 2026-01-10 03:41:46,083 | INFO     | [payload] control thread has finished
[2026-01-09 22:42:47] 2026-01-10 03:41:46,144 | INFO     | [payload] validate_post thread has finished
[2026-01-09 22:42:47] 2026-01-10 03:41:46,518 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 22:42:47] 2026-01-10 03:41:46,523 | INFO     | [job] validate thread has finished
[2026-01-09 22:42:47] 2026-01-10 03:41:46,849 | INFO     | [data] copytool_out thread has finished
[2026-01-09 22:42:47] 2026-01-10 03:41:46,913 | INFO     | [data] copytool_in thread has finished
[2026-01-09 22:42:47] 2026-01-10 03:41:47,130 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 22:42:47] 2026-01-10 03:41:47,296 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:42:47] 2026-01-10 03:41:47,305 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 22:42:47] 2026-01-10 03:41:47,394 | INFO     | [payload] failed_post thread has finished
[2026-01-09 22:42:47] 2026-01-10 03:41:48,302 | INFO     | [job] queue monitor thread has finished
[2026-01-09 22:42:47] 2026-01-10 03:41:51,314 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 22:42:47] 2026-01-10 03:41:55,739 | INFO     | job.realtimelogging is not enabled
[2026-01-09 22:42:47] 2026-01-10 03:41:56,744 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 22:42:47] 2026-01-10 03:42:15,385 | INFO     | PID=3739518 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 22:42:47] 2026-01-10 03:42:15,385 | INFO     | .. there are 20 such processes running
[2026-01-09 22:42:47] 2026-01-10 03:42:15,385 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 22:42:47] 2026-01-10 03:42:15,385 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 22:42:47] 2026-01-10 03:42:15,385 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 22:42:47] 2026-01-10 03:42:41,530 | INFO     | [monitor] cgroup control has ended
[2026-01-09 22:42:47] 2026-01-10 03:42:42,084 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140219182421824)>', '<ExcThread(monitor, started 140218820695808)>']
[2026-01-09 22:42:47] 2026-01-10 03:42:42,531 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 22:42:47] 2026-01-10 03:42:42,531 | INFO     | [monitor] control thread has ended
[2026-01-09 22:42:47] 2026-01-10 03:42:47,110 | INFO     | all workflow threads have been joined
[2026-01-09 22:42:47] 2026-01-10 03:42:47,111 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 22:42:47] 2026-01-10 03:42:47,111 | INFO     | traces error code: 0
[2026-01-09 22:42:47] 2026-01-10 03:42:47,111 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 22:42:47] 2026-01-10 03:42:47,628 [wrapper] ==== pilot stdout END ====
[2026-01-09 22:42:47] 2026-01-10 03:42:47,631 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 22:42:47] 2026-01-10 03:42:47,633 [wrapper] pilotpid: 3739518
[2026-01-09 22:42:47] 2026-01-10 03:42:47,635 [wrapper] Pilot exit status: 0
[2026-01-09 22:42:47] 2026-01-10 03:42:47,657 [wrapper] pandaids: 6963189216 6963189216
[2026-01-09 22:42:47] 2026-01-10 03:42:47,755 [wrapper] cleanup supervisor_pilot 4145670 3739519
[2026-01-09 22:42:47] 2026-01-10 03:42:47,758 [wrapper] Test setup, not cleaning
[2026-01-09 22:42:47] 2026-01-10 03:42:47,766 [wrapper] apfmon messages muted
[2026-01-09 22:42:47] 2026-01-10 03:42:47,769 [wrapper] ==== wrapper stdout END ====
[2026-01-09 22:42:47] 2026-01-10 03:42:47,771 [wrapper] ==== wrapper stderr END ====
[2026-01-09 22:42:47]  *** Error codes and diagnostics ***
[2026-01-09 22:42:47]     "exeErrorCode": 0,
[2026-01-09 22:42:47]     "exeErrorDiag": "",
[2026-01-09 22:42:47]     "pilotErrorCode": 0,
[2026-01-09 22:42:47]     "pilotErrorDiag": "",
[2026-01-09 22:42:47]  *** Listing of results directory ***
[2026-01-09 22:42:47] total 658132
[2026-01-09 22:42:47] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 22:42:47] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 23:21 queuedata.json
[2026-01-09 22:42:47] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 22:42:47] -rwx------. 1 boincer umatlas     36322 Jan  8 23:22 runpilot2-wrapper.sh
[2026-01-09 22:42:47] -rw-r--r--. 1 boincer umatlas       100 Jan  9 15:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 22:42:47] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 15:46 run_atlas
[2026-01-09 22:42:47] -rw-r--r--. 1 boincer umatlas       105 Jan  9 15:46 job.xml
[2026-01-09 22:42:47] -rw-r--r--. 3 boincer umatlas 225878083 Jan  9 15:46 EVNT.47898824._001462.pool.root.1
[2026-01-09 22:42:47] -rw-r--r--. 3 boincer umatlas 225878083 Jan  9 15:46 ATLAS.root_0
[2026-01-09 22:42:47] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 15:46 start_atlas.sh
[2026-01-09 22:42:47] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 15:46 shared
[2026-01-09 22:42:47] -rw-r--r--. 2 boincer umatlas    592401 Jan  9 15:46 input.tar.gz
[2026-01-09 22:42:47] -rw-r--r--. 1 boincer umatlas         0 Jan  9 15:46 boinc_lockfile
[2026-01-09 22:42:47] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 20:47 pandaJob.out
[2026-01-09 22:42:47] -rw-------. 1 boincer umatlas        57 Jan  9 20:47 setup.sh.local
[2026-01-09 22:42:47] -rw-------. 1 boincer umatlas    989382 Jan  9 20:47 agis_schedconf.cvmfs.json
[2026-01-09 22:42:47] -rw-------. 1 boincer umatlas   1516240 Jan  9 20:47 agis_ddmendpoints.agis.ALL.json
[2026-01-09 22:42:47] -rw-r--r--. 1 boincer umatlas      6957 Jan  9 22:39 init_data.xml
[2026-01-09 22:42:47] -rw-r--r--. 1 boincer umatlas       531 Jan  9 22:40 boinc_task_state.xml
[2026-01-09 22:42:47] -rw-------. 1 boincer umatlas 215560034 Jan  9 22:40 HITS.47898826._038098.pool.root.1
[2026-01-09 22:42:47] -rw-------. 1 boincer umatlas        96 Jan  9 22:41 pilot_heartbeat.json
[2026-01-09 22:42:47] -rw-------. 1 boincer umatlas      1043 Jan  9 22:41 memory_monitor_summary.json
[2026-01-09 22:42:47] -rw-------. 1 boincer umatlas    388151 Jan  9 22:41 log.47898826._038098.job.log.tgz.1
[2026-01-09 22:42:47] -rw-------. 1 boincer umatlas      7790 Jan  9 22:41 heartbeat.json
[2026-01-09 22:42:47] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 22:42 boinc_mmap_file
[2026-01-09 22:42:47] -rw-r--r--. 1 boincer umatlas        28 Jan  9 22:42 wrapper_checkpoint.txt
[2026-01-09 22:42:47] -rw-------. 1 boincer umatlas      4897 Jan  9 22:42 pilotlog.txt
[2026-01-09 22:42:47] -rw-------. 1 boincer umatlas    952334 Jan  9 22:42 log.47898826._038098.job.log.1
[2026-01-09 22:42:47] -rw-------. 1 boincer umatlas       357 Jan  9 22:42 output.list
[2026-01-09 22:42:47] -rw-r--r--. 1 boincer umatlas       620 Jan  9 22:42 runtime_log
[2026-01-09 22:42:47] -rw-------. 1 boincer umatlas   1361920 Jan  9 22:42 result.tar.gz
[2026-01-09 22:42:47] -rw-------. 1 boincer umatlas       779 Jan  9 22:42 RzXLDmECJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmj8lKDmZDuWHo.diag
[2026-01-09 22:42:47] -rw-r--r--. 1 boincer umatlas      9422 Jan  9 22:42 runtime_log.err
[2026-01-09 22:42:47] -rw-r--r--. 1 boincer umatlas     23618 Jan  9 22:42 stderr.txt
[2026-01-09 22:42:47] HITS file was successfully produced:
[2026-01-09 22:42:47] -rw-------. 1 boincer umatlas 215560034 Jan  9 22:40 shared/HITS.pool.root.1
[2026-01-09 22:42:47]  *** Contents of shared directory: ***
[2026-01-09 22:42:47] total 433032
[2026-01-09 22:42:47] -rw-r--r--. 3 boincer umatlas 225878083 Jan  9 15:46 ATLAS.root_0
[2026-01-09 22:42:47] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 15:46 start_atlas.sh
[2026-01-09 22:42:47] -rw-r--r--. 2 boincer umatlas    592401 Jan  9 15:46 input.tar.gz
[2026-01-09 22:42:47] -rw-------. 1 boincer umatlas 215560034 Jan  9 22:40 HITS.pool.root.1
[2026-01-09 22:42:47] -rw-------. 1 boincer umatlas   1361920 Jan  9 22:42 result.tar.gz
22:42:49 (3724085): run_atlas exited; CPU time 43895.633493
22:42:49 (3724085): called boinc_finish(0)

</stderr_txt>
]]>

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