Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:22:13 (352286): wrapper (7.7.26015): starting
19:22:13 (352286): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 19:22:13] Arguments: --nthreads 3
[2026-01-10 19:22:13] Threads: 3
[2026-01-10 19:22:13] Checking for CVMFS
[2026-01-10 19:22:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 19:22:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 19:22:13] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 19:22:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 19:22:13] 2.9.2.0 185998 138628 108800 154988 0 56 20470742 36864000 12 130560 1 43579547 99.971 4732200 1606 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 19:22:13] CVMFS is ok
[2026-01-10 19:22:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 19:22:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 19:22:13] Further information can be found at the LHC@home message board.
[2026-01-10 19:22:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 19:22:13] Checking for apptainer binary...
[2026-01-10 19:22:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 19:22:13] Running /usr/bin/apptainer --version
[2026-01-10 19:22:13] apptainer version 1.4.1-1.1
[2026-01-10 19:22:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 19:22:14] thA387a
[2026-01-10 19:22:14] apptainer works
[2026-01-10 19:22:14] Set ATHENA_PROC_NUMBER=3
[2026-01-10 19:22:14] Set ATHENA_CORE_NUMBER=3
[2026-01-10 19:22:14] Starting ATLAS job with PandaID=6963189169
[2026-01-10 19:22:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 21:16:34]  *** The last 200 lines of the pilot log: ***
[2026-01-10 21:16:34] 2026-01-10 20:15:50,796 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 21:16:34] 2026-01-10 20:15:50,796 | INFO     | job 6963189169 has completed (purged errors)
[2026-01-10 21:16:34] 2026-01-10 20:15:50,796 | INFO     | overall cleanup function is called
[2026-01-10 21:16:34] 2026-01-10 20:15:51,037 | WARNING  | process 362448 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 21:16:34] 2026-01-10 20:15:51,066 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 21:16:34] 2026-01-10 20:15:51,103 | INFO     | number of running child processes to parent process 362448: 1
[2026-01-10 21:16:34] 2026-01-10 20:15:51,103 | INFO     | maximum number of monitored processes: 6
[2026-01-10 21:16:34] 2026-01-10 20:15:51,103 | INFO     | aborting job monitoring since job object (job id=6963189169) has expired
[2026-01-10 21:16:34] 2026-01-10 20:15:51,803 | INFO     | --- collectZombieJob: --- 10, [362448]
[2026-01-10 21:16:34] 2026-01-10 20:15:51,803 | INFO     | zombie collector waiting for pid 362448
[2026-01-10 21:16:34] 2026-01-10 20:15:51,803 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 21:16:34] 2026-01-10 20:15:51,803 | INFO     | collected zombie processes
[2026-01-10 21:16:34] 2026-01-10 20:15:51,803 | INFO     | will attempt to kill all subprocesses of pid=362448
[2026-01-10 21:16:34] 2026-01-10 20:15:51,843 | INFO     | process IDs to be killed: [362448] (in reverse order)
[2026-01-10 21:16:34] 2026-01-10 20:15:51,867 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 21:16:34] 2026-01-10 20:15:51,867 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 21:16:34] 2026-01-10 20:15:51,869 | INFO     | did not find any defunct processes belonging to 362448
[2026-01-10 21:16:34] 2026-01-10 20:15:51,870 | INFO     | did not find any defunct processes belonging to 362448
[2026-01-10 21:16:34] 2026-01-10 20:15:51,870 | INFO     | ready for new job
[2026-01-10 21:16:34] 2026-01-10 20:15:51,870 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 21:16:34] 2026-01-10 20:15:51,870 | INFO     | ***************************************
[2026-01-10 21:16:34] 2026-01-10 20:15:51,870 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 21:16:34] 2026-01-10 20:15:51,871 | INFO     | ***************************************
[2026-01-10 21:16:34] 2026-01-10 20:15:51,871 | INFO     | 
[2026-01-10 21:16:34] 2026-01-10 20:15:51,871 | INFO     | architecture information:
[2026-01-10 21:16:34] 2026-01-10 20:15:51,871 | INFO     | executing command: cat /etc/os-release
[2026-01-10 21:16:34] 2026-01-10 20:15:51,879 | INFO     | cat /etc/os-release:
[2026-01-10 21:16:34] NAME="CentOS Linux"
[2026-01-10 21:16:34] VERSION="7 (Core)"
[2026-01-10 21:16:34] ID="centos"
[2026-01-10 21:16:34] ID_LIKE="rhel fedora"
[2026-01-10 21:16:34] VERSION_ID="7"
[2026-01-10 21:16:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 21:16:34] ANSI_COLOR="0;31"
[2026-01-10 21:16:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 21:16:34] HOME_URL="https://www.centos.org/"
[2026-01-10 21:16:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 21:16:34] 
[2026-01-10 21:16:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 21:16:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 21:16:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 21:16:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 21:16:34] 
[2026-01-10 21:16:34] 2026-01-10 20:15:51,880 | INFO     | ***************************************
[2026-01-10 21:16:34] 2026-01-10 20:15:52,383 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 21:16:34] 2026-01-10 20:15:52,394 | INFO     | sufficient remaining disk space (240292724736 B)
[2026-01-10 21:16:34] 2026-01-10 20:15:52,394 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 21:16:34] 2026-01-10 20:15:52,394 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 21:16:34] 2026-01-10 20:15:52,394 | INFO     | update_server=False
[2026-01-10 21:16:34] 2026-01-10 20:15:52,394 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 21:16:34] 2026-01-10 20:15:52,394 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 21:16:34] 2026-01-10 20:15:52,394 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 21:16:34] 2026-01-10 20:15:52,394 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 21:16:34] 2026-01-10 20:15:52,395 | INFO     | aborting loop
[2026-01-10 21:16:34] 2026-01-10 20:15:52,888 | INFO     | all data control threads have been joined
[2026-01-10 21:16:34] 2026-01-10 20:15:53,400 | INFO     | [job] retrieve thread has finished
[2026-01-10 21:16:34] 2026-01-10 20:15:53,400 | INFO     | [job] job monitor thread has finished
[2026-01-10 21:16:34] 2026-01-10 20:15:53,400 | INFO     | [job] queue monitor thread has finished
[2026-01-10 21:16:34] 2026-01-10 20:15:53,449 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 21:16:34] 2026-01-10 20:15:53,452 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 21:16:34] 2026-01-10 20:15:53,586 | INFO     | all payload control threads have been joined
[2026-01-10 21:16:34] 2026-01-10 20:15:53,873 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 21:16:34] 2026-01-10 20:15:53,894 | INFO     | [data] control thread has finished
[2026-01-10 21:16:34] 2026-01-10 20:15:54,004 | INFO     | all job control threads have been joined
[2026-01-10 21:16:34] 2026-01-10 20:15:54,046 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 21:16:34] 2026-01-10 20:15:54,287 | INFO     | [data] copytool_in thread has finished
[2026-01-10 21:16:34] 2026-01-10 20:15:54,576 | INFO     | [payload] validate_post thread has finished
[2026-01-10 21:16:34] 2026-01-10 20:15:54,587 | INFO     | [payload] control thread has finished
[2026-01-10 21:16:34] 2026-01-10 20:15:54,777 | INFO     | [payload] failed_post thread has finished
[2026-01-10 21:16:34] 2026-01-10 20:15:54,873 | INFO     | [job] validate thread has finished
[2026-01-10 21:16:34] 2026-01-10 20:15:55,007 | INFO     | [job] control thread has finished
[2026-01-10 21:16:34] 2026-01-10 20:15:55,879 | INFO     | [data] copytool_out thread has finished
[2026-01-10 21:16:34] 2026-01-10 20:15:56,401 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 21:16:34] 2026-01-10 20:16:02,453 | INFO     | job.realtimelogging is not enabled
[2026-01-10 21:16:34] 2026-01-10 20:16:03,454 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 21:16:34] 2026-01-10 20:16:22,068 | INFO     | PID=356006 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 21:16:34] 2026-01-10 20:16:22,069 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 21:16:34] 2026-01-10 20:16:22,069 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 21:16:34] 2026-01-10 20:16:22,069 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 21:16:34] 2026-01-10 20:16:27,003 | INFO     | [monitor] cgroup control has ended
[2026-01-10 21:16:34] 2026-01-10 20:16:28,854 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139792362891072)>', '<ExcThread(monitor, started 139792008320768)>']
[2026-01-10 21:16:34] 2026-01-10 20:16:29,106 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 21:16:34] 2026-01-10 20:16:29,107 | INFO     | [monitor] control thread has ended
[2026-01-10 21:16:34] 2026-01-10 20:16:33,880 | INFO     | all workflow threads have been joined
[2026-01-10 21:16:34] 2026-01-10 20:16:33,880 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 21:16:34] 2026-01-10 20:16:33,880 | INFO     | traces error code: 0
[2026-01-10 21:16:34] 2026-01-10 20:16:33,880 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 21:16:34] 2026-01-10 20:16:33,929 [wrapper] ==== pilot stdout END ====
[2026-01-10 21:16:34] 2026-01-10 20:16:33,932 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 21:16:34] 2026-01-10 20:16:33,934 [wrapper] pilotpid: 356006
[2026-01-10 21:16:34] 2026-01-10 20:16:33,936 [wrapper] Pilot exit status: 0
[2026-01-10 21:16:34] 2026-01-10 20:16:33,943 [wrapper] pandaids: 6963189169
[2026-01-10 21:16:34] 2026-01-10 20:16:33,959 [wrapper] cleanup supervisor_pilot  376940 356007
[2026-01-10 21:16:34] 2026-01-10 20:16:33,962 [wrapper] Test setup, not cleaning
[2026-01-10 21:16:34] 2026-01-10 20:16:33,964 [wrapper] apfmon messages muted
[2026-01-10 21:16:34] 2026-01-10 20:16:33,966 [wrapper] ==== wrapper stdout END ====
[2026-01-10 21:16:34] 2026-01-10 20:16:33,968 [wrapper] ==== wrapper stderr END ====
[2026-01-10 21:16:34]  *** Error codes and diagnostics ***
[2026-01-10 21:16:34]     "exeErrorCode": 0,
[2026-01-10 21:16:34]     "exeErrorDiag": "",
[2026-01-10 21:16:34]     "pilotErrorCode": 0,
[2026-01-10 21:16:34]     "pilotErrorDiag": "",
[2026-01-10 21:16:34]  *** Listing of results directory ***
[2026-01-10 21:16:34] total 447028
[2026-01-10 21:16:34] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:21 queuedata.json
[2026-01-10 21:16:34] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 21:16:34] -rwx------ 1 boinc boinc     36322 Jan  9 05:22 runpilot2-wrapper.sh
[2026-01-10 21:16:34] -rw-r--r-- 1 boinc boinc       100 Jan 10 19:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 21:16:34] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 19:22 run_atlas
[2026-01-10 21:16:34] -rw-r--r-- 1 boinc boinc       105 Jan 10 19:22 job.xml
[2026-01-10 21:16:34] -rw-r--r-- 2 boinc boinc 224355145 Jan 10 19:22 EVNT.47898824._001461.pool.root.1
[2026-01-10 21:16:34] -rw-r--r-- 2 boinc boinc    592397 Jan 10 19:22 input.tar.gz
[2026-01-10 21:16:34] -rw-r--r-- 2 boinc boinc     15847 Jan 10 19:22 start_atlas.sh
[2026-01-10 21:16:34] drwxrwx--x 2 boinc boinc      4096 Jan 10 19:22 shared
[2026-01-10 21:16:34] -rw-r--r-- 1 boinc boinc         0 Jan 10 19:22 boinc_setup_complete
[2026-01-10 21:16:34] -rw-r--r-- 1 boinc boinc      6440 Jan 10 19:22 init_data.xml
[2026-01-10 21:16:34] -rw-r--r-- 1 boinc boinc         0 Jan 10 19:22 boinc_lockfile
[2026-01-10 21:16:34] -rw-r--r-- 1 boinc boinc      2519 Jan 10 19:22 pandaJob.out
[2026-01-10 21:16:34] -rw------- 1 boinc boinc    989548 Jan 10 19:22 agis_schedconf.cvmfs.json
[2026-01-10 21:16:34] -rw------- 1 boinc boinc   1516240 Jan 10 19:22 agis_ddmendpoints.agis.ALL.json
[2026-01-10 21:16:34] drwx------ 5 boinc boinc      4096 Jan 10 19:22 pilot3
[2026-01-10 21:16:34] -rw-r--r-- 1 boinc boinc       529 Jan 10 21:15 boinc_task_state.xml
[2026-01-10 21:16:34] -rw------- 1 boinc boinc 226999140 Jan 10 21:15 HITS.47898826._038051.pool.root.1
[2026-01-10 21:16:34] -rw------- 1 boinc boinc      1022 Jan 10 21:15 memory_monitor_summary.json
[2026-01-10 21:16:34] -rw------- 1 boinc boinc    269583 Jan 10 21:15 log.47898826._038051.job.log.tgz.1
[2026-01-10 21:16:34] -rw------- 1 boinc boinc      7763 Jan 10 21:15 heartbeat.json
[2026-01-10 21:16:34] -rw------- 1 boinc boinc        95 Jan 10 21:16 pilot_heartbeat.json
[2026-01-10 21:16:34] -rw-r--r-- 1 boinc boinc        27 Jan 10 21:16 wrapper_checkpoint.txt
[2026-01-10 21:16:34] -rw-r--r-- 1 boinc boinc      8192 Jan 10 21:16 boinc_mmap_file
[2026-01-10 21:16:34] -rw------- 1 boinc boinc      4823 Jan 10 21:16 pilotlog.txt
[2026-01-10 21:16:34] -rw------- 1 boinc boinc    982490 Jan 10 21:16 log.47898826._038051.job.log.1
[2026-01-10 21:16:34] -rw------- 1 boinc boinc       357 Jan 10 21:16 output.list
[2026-01-10 21:16:34] -rw-r--r-- 1 boinc boinc       620 Jan 10 21:16 runtime_log
[2026-01-10 21:16:34] -rw------- 1 boinc boinc   1269760 Jan 10 21:16 result.tar.gz
[2026-01-10 21:16:34] -rw-r--r-- 1 boinc boinc      8902 Jan 10 21:16 runtime_log.err
[2026-01-10 21:16:34] -rw------- 1 boinc boinc       660 Jan 10 21:16 9TbNDmDCJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmE8lKDmeeLSSo.diag
[2026-01-10 21:16:34] -rw-r--r-- 1 boinc boinc     11628 Jan 10 21:16 stderr.txt
[2026-01-10 21:16:34] HITS file was successfully produced:
[2026-01-10 21:16:34] -rw------- 1 boinc boinc 226999140 Jan 10 21:15 shared/HITS.pool.root.1
[2026-01-10 21:16:34]  *** Contents of shared directory: ***
[2026-01-10 21:16:34] total 442624
[2026-01-10 21:16:34] -rw-r--r-- 2 boinc boinc 224355145 Jan 10 19:22 ATLAS.root_0
[2026-01-10 21:16:34] -rw-r--r-- 2 boinc boinc    592397 Jan 10 19:22 input.tar.gz
[2026-01-10 21:16:34] -rw-r--r-- 2 boinc boinc     15847 Jan 10 19:22 start_atlas.sh
[2026-01-10 21:16:34] -rw------- 1 boinc boinc 226999140 Jan 10 21:15 HITS.pool.root.1
[2026-01-10 21:16:34] -rw------- 1 boinc boinc   1269760 Jan 10 21:16 result.tar.gz
21:16:35 (352286): run_atlas exited; CPU time 19731.629681
21:16:35 (352286): called boinc_finish(0)

</stderr_txt>
]]>

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