Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:09:18 (2642766): wrapper (7.7.26015): starting
05:09:18 (2642766): wrapper: running run_atlas (--nthreads 6)
[2026-01-10 05:09:18] Arguments: --nthreads 6
[2026-01-10 05:09:18] Threads: 6
[2026-01-10 05:09:18] Checking for CVMFS
[2026-01-10 05:09:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 05:09:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 05:09:19] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 05:09:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 05:09:19] 2.13.3.0 2288015 866 65560 154955 3 97 12056219 20971521 916 130560 0 1112998 99.993 35618 17 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-01-10 05:09:19] CVMFS is ok
[2026-01-10 05:09:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 05:09:19] Checking for apptainer binary...
[2026-01-10 05:09:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 05:09:19] Running /usr/bin/apptainer --version
[2026-01-10 05:09:19] apptainer version 1.4.4-1.el9
[2026-01-10 05:09:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 05:09:19] testio006
[2026-01-10 05:09:19] apptainer works
[2026-01-10 05:09:19] Set ATHENA_PROC_NUMBER=6
[2026-01-10 05:09:19] Set ATHENA_CORE_NUMBER=6
[2026-01-10 05:09:19] Starting ATLAS job with PandaID=6963188977
[2026-01-10 05:09:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 07:28:51]  *** The last 200 lines of the pilot log: ***
[2026-01-10 07:28:51] 2026-01-09 22:28:12,516 | INFO     | time since job start (8320s) is within the limit (349056.0s)
[2026-01-10 07:28:51] 2026-01-09 22:28:13,258 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 07:28:51] 2026-01-09 22:28:13,260 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3963.00125
[2026-01-10 07:28:51] 2026-01-09 22:28:13,262 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6963188977/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 07:28:51] 2026-01-09 22:28:13,263 | INFO     | extracted standard info from prmon json
[2026-01-10 07:28:51] 2026-01-09 22:28:13,263 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 07:28:51] 2026-01-09 22:28:13,263 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 07:28:51] 2026-01-09 22:28:13,263 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 07:28:51] 2026-01-09 22:28:13,264 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 07:28:51] 2026-01-09 22:28:13,265 | INFO     | fitting pss+swap vs Time
[2026-01-10 07:28:51] 2026-01-09 22:28:13,265 | INFO     | sum of square deviations: 762879420.0
[2026-01-10 07:28:51] 2026-01-09 22:28:13,266 | INFO     | sum of deviations: 13930331794.999992
[2026-01-10 07:28:51] 2026-01-09 22:28:13,266 | INFO     | mean x: 1767993486.0
[2026-01-10 07:28:51] 2026-01-09 22:28:13,266 | INFO     | mean y: 2486324.6
[2026-01-10 07:28:51] 2026-01-09 22:28:13,266 | INFO     | intersect: -32281430668.964558
[2026-01-10 07:28:51] 2026-01-09 22:28:13,266 | INFO     | chi2: 2.1304442629509053
[2026-01-10 07:28:51] 2026-01-09 22:28:13,266 | INFO     | sum of square deviations: 681212772.5
[2026-01-10 07:28:51] 2026-01-09 22:28:13,267 | INFO     | sum of deviations: 13980642154.999996
[2026-01-10 07:28:51] 2026-01-09 22:28:13,267 | INFO     | mean x: 1767993333.5
[2026-01-10 07:28:51] 2026-01-09 22:28:13,267 | INFO     | mean y: 2486418.7384615387
[2026-01-10 07:28:51] 2026-01-09 22:28:13,267 | INFO     | intersect: -36282332548.14176
[2026-01-10 07:28:51] 2026-01-09 22:28:13,267 | INFO     | chi2: 2.1333496888759167
[2026-01-10 07:28:51] 2026-01-09 22:28:13,267 | INFO     | current chi2=2.1333496888759167 (change=-0.13637652838601258 %)
[2026-01-10 07:28:51] 2026-01-09 22:28:13,267 | INFO     | right removable region: 129
[2026-01-10 07:28:51] 2026-01-09 22:28:13,268 | INFO     | sum of square deviations: 681212772.5
[2026-01-10 07:28:51] 2026-01-09 22:28:13,268 | INFO     | sum of deviations: -14948221684.499998
[2026-01-10 07:28:51] 2026-01-09 22:28:13,268 | INFO     | mean x: 1767993638.5
[2026-01-10 07:28:51] 2026-01-09 22:28:13,268 | INFO     | mean y: 2539901.315384615
[2026-01-10 07:28:51] 2026-01-09 22:28:13,268 | INFO     | intersect: 38798584121.23457
[2026-01-10 07:28:51] 2026-01-09 22:28:13,268 | INFO     | chi2: 0.11370104750064956
[2026-01-10 07:28:51] 2026-01-09 22:28:13,268 | INFO     | current chi2=0.11370104750064956 (change=94.66303580535073 %)
[2026-01-10 07:28:51] 2026-01-09 22:28:13,269 | INFO     | sum of square deviations: 605592750.0
[2026-01-10 07:28:51] 2026-01-09 22:28:13,269 | INFO     | sum of deviations: -18118723616.00001
[2026-01-10 07:28:51] 2026-01-09 22:28:13,269 | INFO     | mean x: 1767993791.0
[2026-01-10 07:28:51] 2026-01-09 22:28:13,269 | INFO     | mean y: 2546151.272
[2026-01-10 07:28:51] 2026-01-09 22:28:13,269 | INFO     | intersect: 52899135243.41865
[2026-01-10 07:28:51] 2026-01-09 22:28:13,269 | INFO     | chi2: 0.041269649580404334
[2026-01-10 07:28:51] 2026-01-09 22:28:13,269 | INFO     | current chi2=0.041269649580404334 (change=63.703369065119155 %)
[2026-01-10 07:28:51] 2026-01-09 22:28:13,269 | INFO     | sum of square deviations: 535786790.0
[2026-01-10 07:28:51] 2026-01-09 22:28:13,270 | INFO     | sum of deviations: -16959494103.500004
[2026-01-10 07:28:51] 2026-01-09 22:28:13,270 | INFO     | mean x: 1767993943.5
[2026-01-10 07:28:51] 2026-01-09 22:28:13,270 | INFO     | mean y: 2543609.058333333
[2026-01-10 07:28:51] 2026-01-09 22:28:13,270 | INFO     | intersect: 55965630828.53228
[2026-01-10 07:28:51] 2026-01-09 22:28:13,270 | INFO     | chi2: 0.03924656722513919
[2026-01-10 07:28:51] 2026-01-09 22:28:13,270 | INFO     | current chi2=0.03924656722513919 (change=4.902106937747653 %)
[2026-01-10 07:28:51] 2026-01-09 22:28:13,270 | INFO     | left removable region: 30
[2026-01-10 07:28:51] 2026-01-09 22:28:13,270 | INFO     | sum of square deviations: 300842850.0
[2026-01-10 07:28:51] 2026-01-09 22:28:13,271 | INFO     | sum of deviations: -10990681954.0
[2026-01-10 07:28:51] 2026-01-09 22:28:13,271 | INFO     | mean x: 1767994218.0
[2026-01-10 07:28:51] 2026-01-09 22:28:13,271 | INFO     | mean y: 2533170.4545454546
[2026-01-10 07:28:51] 2026-01-09 22:28:13,271 | INFO     | intersect: 64592607844.15526
[2026-01-10 07:28:51] 2026-01-09 22:28:13,271 | INFO     | chi2: 0.035194312236729246
[2026-01-10 07:28:51] 2026-01-09 22:28:13,271 | INFO     | current memory leak: -36.53 B/s (using 99 data points, chi2=0.04)
[2026-01-10 07:28:51] 2026-01-09 22:28:13,271 | INFO     | could have reported an average CPU frequency of 3930 MHz (8 samples)
[2026-01-10 07:28:51] 2026-01-09 22:28:13,272 | INFO     | ..............................
[2026-01-10 07:28:51] 2026-01-09 22:28:13,272 | INFO     | . Timing measurements:
[2026-01-10 07:28:51] 2026-01-09 22:28:13,272 | INFO     | . get job = 0 s
[2026-01-10 07:28:51] 2026-01-09 22:28:13,272 | INFO     | . initial setup = 6 s
[2026-01-10 07:28:51] 2026-01-09 22:28:13,272 | INFO     | . payload setup = 6 s
[2026-01-10 07:28:51] 2026-01-09 22:28:13,272 | INFO     | . stage-in = 0 s
[2026-01-10 07:28:51] 2026-01-09 22:28:13,272 | INFO     | . payload execution = 8215 s
[2026-01-10 07:28:51] 2026-01-09 22:28:13,272 | INFO     | . stage-out = 0 s
[2026-01-10 07:28:51] 2026-01-09 22:28:13,272 | INFO     | . log creation = 0 s
[2026-01-10 07:28:51] 2026-01-09 22:28:13,272 | INFO     | ..............................
[2026-01-10 07:28:51] 2026-01-09 22:28:13,331 | INFO     | 
[2026-01-10 07:28:51] 2026-01-09 22:28:13,331 | INFO     | job summary report
[2026-01-10 07:28:51] 2026-01-09 22:28:13,332 | INFO     | --------------------------------------------------
[2026-01-10 07:28:51] 2026-01-09 22:28:13,332 | INFO     | PanDA job id: 6963188977
[2026-01-10 07:28:51] 2026-01-09 22:28:13,332 | INFO     | task id: 47898826
[2026-01-10 07:28:51] 2026-01-09 22:28:13,332 | INFO     | errors: (none)
[2026-01-10 07:28:51] 2026-01-09 22:28:13,332 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 07:28:51] 2026-01-09 22:28:13,332 | INFO     | pilot state: finished 
[2026-01-10 07:28:51] 2026-01-09 22:28:13,332 | INFO     | transexitcode: 0
[2026-01-10 07:28:51] 2026-01-09 22:28:13,332 | INFO     | exeerrorcode: 0
[2026-01-10 07:28:51] 2026-01-09 22:28:13,332 | INFO     | exeerrordiag: 
[2026-01-10 07:28:51] 2026-01-09 22:28:13,332 | INFO     | exitcode: 0
[2026-01-10 07:28:51] 2026-01-09 22:28:13,332 | INFO     | exitmsg: OK
[2026-01-10 07:28:51] 2026-01-09 22:28:13,332 | INFO     | cpuconsumptiontime: 45737 s
[2026-01-10 07:28:51] 2026-01-09 22:28:13,332 | INFO     | nevents: 400
[2026-01-10 07:28:51] 2026-01-09 22:28:13,332 | INFO     | neventsw: 0
[2026-01-10 07:28:51] 2026-01-09 22:28:13,333 | INFO     | pid: 2653251
[2026-01-10 07:28:51] 2026-01-09 22:28:13,333 | INFO     | pgrp: 2653251
[2026-01-10 07:28:51] 2026-01-09 22:28:13,333 | INFO     | corecount: 6
[2026-01-10 07:28:51] 2026-01-09 22:28:13,333 | INFO     | event service: False
[2026-01-10 07:28:51] 2026-01-09 22:28:13,333 | INFO     | sizes: {0: 2283801, 1: 2284000, 5: 2284262, 11: 2284318, 8225: 2312139, 8227: 2321323, 8305: 2321461}
[2026-01-10 07:28:51] 2026-01-09 22:28:13,333 | INFO     | --------------------------------------------------
[2026-01-10 07:28:51] 2026-01-09 22:28:13,333 | INFO     | 
[2026-01-10 07:28:51] 2026-01-09 22:28:13,333 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2026-01-10 07:28:51] 2026-01-09 22:28:13,349 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 07:28:51] 2026-01-09 22:28:13,350 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 07:28:51] 2026-01-09 22:28:13,350 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 07:28:51] 2026-01-09 22:28:13,350 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 07:28:51] 2026-01-09 22:28:13,350 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 07:28:51] 2026-01-09 22:28:13,350 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 07:28:51] 2026-01-09 22:28:13,350 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 07:28:51] 2026-01-09 22:28:13,350 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 07:28:51] 2026-01-09 22:28:13,350 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 07:28:51] 2026-01-09 22:28:13,350 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 07:28:51] 2026-01-09 22:28:13,350 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 07:28:51] 2026-01-09 22:28:13,350 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 07:28:51] 2026-01-09 22:28:13,350 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 07:28:51] 2026-01-09 22:28:13,350 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 07:28:51] 2026-01-09 22:28:13,350 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 07:28:51] 2026-01-09 22:28:13,350 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 07:28:51] 2026-01-09 22:28:13,350 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 07:28:51] 2026-01-09 22:28:13,351 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 07:28:51] 2026-01-09 22:28:13,351 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 07:28:51] 2026-01-09 22:28:13,351 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 07:28:51] 2026-01-09 22:28:13,351 | INFO     | job 6963188977 has completed (purged errors)
[2026-01-10 07:28:51] 2026-01-09 22:28:13,351 | INFO     | overall cleanup function is called
[2026-01-10 07:28:51] 2026-01-09 22:28:14,357 | INFO     | --- collectZombieJob: --- 10, [2653251]
[2026-01-10 07:28:51] 2026-01-09 22:28:14,357 | INFO     | zombie collector waiting for pid 2653251
[2026-01-10 07:28:51] 2026-01-09 22:28:14,357 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 07:28:51] 2026-01-09 22:28:14,357 | INFO     | collected zombie processes
[2026-01-10 07:28:51] 2026-01-09 22:28:14,357 | INFO     | will attempt to kill all subprocesses of pid=2653251
[2026-01-10 07:28:51] 2026-01-09 22:28:14,434 | INFO     | process IDs to be killed: [2653251] (in reverse order)
[2026-01-10 07:28:51] 2026-01-09 22:28:14,470 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 07:28:51] 2026-01-09 22:28:14,471 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 07:28:51] 2026-01-09 22:28:14,474 | INFO     | did not find any defunct processes belonging to 2653251
[2026-01-10 07:28:51] 2026-01-09 22:28:14,477 | INFO     | did not find any defunct processes belonging to 2653251
[2026-01-10 07:28:51] 2026-01-09 22:28:14,478 | INFO     | ready for new job
[2026-01-10 07:28:51] 2026-01-09 22:28:14,478 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 07:28:51] 2026-01-09 22:28:14,479 | INFO     | ***************************************
[2026-01-10 07:28:51] 2026-01-09 22:28:14,479 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 07:28:51] 2026-01-09 22:28:14,479 | INFO     | ***************************************
[2026-01-10 07:28:51] 2026-01-09 22:28:14,479 | INFO     | 
[2026-01-10 07:28:51] 2026-01-09 22:28:14,480 | INFO     | architecture information:
[2026-01-10 07:28:51] 2026-01-09 22:28:14,481 | INFO     | executing command: cat /etc/os-release
[2026-01-10 07:28:51] 2026-01-09 22:28:14,494 | INFO     | cat /etc/os-release:
[2026-01-10 07:28:51] NAME="CentOS Linux"
[2026-01-10 07:28:51] VERSION="7 (Core)"
[2026-01-10 07:28:51] ID="centos"
[2026-01-10 07:28:51] ID_LIKE="rhel fedora"
[2026-01-10 07:28:51] VERSION_ID="7"
[2026-01-10 07:28:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 07:28:51] ANSI_COLOR="0;31"
[2026-01-10 07:28:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 07:28:51] HOME_URL="https://www.centos.org/"
[2026-01-10 07:28:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 07:28:51] 
[2026-01-10 07:28:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 07:28:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 07:28:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 07:28:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 07:28:51] 
[2026-01-10 07:28:51] 2026-01-09 22:28:14,494 | INFO     | ***************************************
[2026-01-10 07:28:51] 2026-01-09 22:28:14,996 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2026-01-10 07:28:51] 2026-01-09 22:28:15,010 | INFO     | sufficient remaining disk space (92275736576 B)
[2026-01-10 07:28:51] 2026-01-09 22:28:15,010 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 07:28:51] 2026-01-09 22:28:15,010 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 07:28:51] 2026-01-09 22:28:15,010 | INFO     | update_server=False
[2026-01-10 07:28:51] 2026-01-09 22:28:15,010 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 07:28:51] 2026-01-09 22:28:15,011 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:28:51] 2026-01-09 22:28:15,126 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:28:51] 2026-01-09 22:28:15,126 | INFO     | all payload control threads have been joined
[2026-01-10 07:28:51] 2026-01-09 22:28:15,126 | INFO     | aborting loop
[2026-01-10 07:28:51] 2026-01-09 22:28:15,589 | INFO     | all job control threads have been joined
[2026-01-10 07:28:51] 2026-01-09 22:28:15,841 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 07:28:51] 2026-01-09 22:28:15,844 | INFO     | all data control threads have been joined
[2026-01-10 07:28:51] 2026-01-09 22:28:16,015 | INFO     | [job] retrieve thread has finished
[2026-01-10 07:28:51] 2026-01-09 22:28:16,016 | INFO     | [job] queue monitor thread has finished
[2026-01-10 07:28:51] 2026-01-09 22:28:16,131 | INFO     | [job] job monitor thread has finished
[2026-01-10 07:28:51] 2026-01-09 22:28:16,131 | INFO     | [payload] control thread has finished
[2026-01-10 07:28:51] 2026-01-09 22:28:16,594 | INFO     | [job] control thread has finished
[2026-01-10 07:28:51] 2026-01-09 22:28:16,835 | INFO     | [payload] validate_post thread has finished
[2026-01-10 07:28:51] 2026-01-09 22:28:16,838 | INFO     | [job] validate thread has finished
[2026-01-10 07:28:51] 2026-01-09 22:28:16,849 | INFO     | [data] control thread has finished
[2026-01-10 07:28:51] 2026-01-09 22:28:17,042 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 07:28:51] 2026-01-09 22:28:17,059 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 07:28:51] 2026-01-09 22:28:17,274 | INFO     | [payload] failed_post thread has finished
[2026-01-10 07:28:51] 2026-01-09 22:28:17,449 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 07:28:51] 2026-01-09 22:28:17,497 | INFO     | [data] copytool_in thread has finished
[2026-01-10 07:28:51] 2026-01-09 22:28:17,846 | INFO     | [data] copytool_out thread has finished
[2026-01-10 07:28:51] 2026-01-09 22:28:17,900 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 07:28:51] 2026-01-09 22:28:21,905 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 07:28:51] 2026-01-09 22:28:25,934 | INFO     | job.realtimelogging is not enabled
[2026-01-10 07:28:51] 2026-01-09 22:28:26,939 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 07:28:51] 2026-01-09 22:28:45,673 | INFO     | PID=2646546 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 07:28:51] 2026-01-09 22:28:45,674 | INFO     | .. there are 2 such processes running
[2026-01-10 07:28:51] 2026-01-09 22:28:45,674 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 07:28:51] 2026-01-09 22:28:45,674 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 07:28:51] 2026-01-09 22:28:45,674 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 07:28:51] 2026-01-09 22:28:46,234 | INFO     | [monitor] cgroup control has ended
[2026-01-10 07:28:51] 2026-01-09 22:28:46,687 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140565773117248)>', '<ExcThread(monitor, started 140565404440320)>']
[2026-01-10 07:28:51] 2026-01-09 22:28:47,684 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 07:28:51] 2026-01-09 22:28:47,684 | INFO     | [monitor] control thread has ended
[2026-01-10 07:28:51] 2026-01-09 22:28:51,712 | INFO     | all workflow threads have been joined
[2026-01-10 07:28:51] 2026-01-09 22:28:51,712 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 07:28:51] 2026-01-09 22:28:51,712 | INFO     | traces error code: 0
[2026-01-10 07:28:51] 2026-01-09 22:28:51,712 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 07:28:51] 2026-01-09 22:28:51,815 [wrapper] ==== pilot stdout END ====
[2026-01-10 07:28:51] 2026-01-09 22:28:51,817 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 07:28:51] 2026-01-09 22:28:51,819 [wrapper] pilotpid: 2646546
[2026-01-10 07:28:51] 2026-01-09 22:28:51,821 [wrapper] Pilot exit status: 0
[2026-01-10 07:28:51] 2026-01-09 22:28:51,830 [wrapper] pandaids: 6963188977
[2026-01-10 07:28:51] 2026-01-09 22:28:51,857 [wrapper] cleanup supervisor_pilot 2679709 2646547
[2026-01-10 07:28:51] 2026-01-09 22:28:51,860 [wrapper] Test setup, not cleaning
[2026-01-10 07:28:51] 2026-01-09 22:28:51,862 [wrapper] apfmon messages muted
[2026-01-10 07:28:51] 2026-01-09 22:28:51,864 [wrapper] ==== wrapper stdout END ====
[2026-01-10 07:28:51] 2026-01-09 22:28:51,867 [wrapper] ==== wrapper stderr END ====
[2026-01-10 07:28:51]  *** Error codes and diagnostics ***
[2026-01-10 07:28:51]     "exeErrorCode": 0,
[2026-01-10 07:28:51]     "exeErrorDiag": "",
[2026-01-10 07:28:51]     "pilotErrorCode": 0,
[2026-01-10 07:28:51]     "pilotErrorDiag": "",
[2026-01-10 07:28:51]  *** Listing of results directory ***
[2026-01-10 07:28:51] total 446008
[2026-01-10 07:28:51] -rw-r--r--. 1 boinc boinc      5112 Jan  9 13:21 queuedata.json
[2026-01-10 07:28:51] -rw-r--r--. 1 boinc boinc    579449 Jan  9 13:21 pilot3.tar.gz
[2026-01-10 07:28:51] -rwx------. 1 boinc boinc     36322 Jan  9 13:22 runpilot2-wrapper.sh
[2026-01-10 07:28:51] -rw-r--r--. 1 boinc boinc       100 Jan 10 05:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 07:28:51] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 05:09 run_atlas
[2026-01-10 07:28:51] -rw-r--r--. 1 boinc boinc       105 Jan 10 05:09 job.xml
[2026-01-10 07:28:51] -rw-r--r--. 1 boinc boinc      9357 Jan 10 05:09 init_data.xml
[2026-01-10 07:28:51] -rw-r--r--. 2 boinc boinc 225459207 Jan 10 05:09 EVNT.47898824._001455.pool.root.1
[2026-01-10 07:28:51] -rw-r--r--. 2 boinc boinc     15847 Jan 10 05:09 start_atlas.sh
[2026-01-10 07:28:51] drwxrwx--x. 2 boinc boinc        68 Jan 10 05:09 shared
[2026-01-10 07:28:51] -rw-r--r--. 2 boinc boinc    592397 Jan 10 05:09 input.tar.gz
[2026-01-10 07:28:51] -rw-r--r--. 1 boinc boinc         0 Jan 10 05:09 boinc_lockfile
[2026-01-10 07:28:51] -rw-r--r--. 1 boinc boinc      2520 Jan 10 05:09 pandaJob.out
[2026-01-10 07:28:51] -rw-------. 1 boinc boinc    989364 Jan 10 05:09 agis_schedconf.cvmfs.json
[2026-01-10 07:28:51] -rw-------. 1 boinc boinc   1516240 Jan 10 05:09 agis_ddmendpoints.agis.ALL.json
[2026-01-10 07:28:51] drwx------. 5 boinc boinc      4096 Jan 10 05:09 pilot3
[2026-01-10 07:28:51] -rw-------. 1 boinc boinc 224259793 Jan 10 07:26 HITS.47898826._037914.pool.root.1
[2026-01-10 07:28:51] -rw-------. 1 boinc boinc      1019 Jan 10 07:26 memory_monitor_summary.json
[2026-01-10 07:28:51] -rw-------. 1 boinc boinc    349883 Jan 10 07:26 log.47898826._037914.job.log.tgz.1
[2026-01-10 07:28:51] -rw-r--r--. 1 boinc boinc       529 Jan 10 07:26 boinc_task_state.xml
[2026-01-10 07:28:51] -rw-------. 1 boinc boinc        95 Jan 10 07:27 pilot_heartbeat.json
[2026-01-10 07:28:51] -rw-------. 1 boinc boinc      7755 Jan 10 07:28 heartbeat.json
[2026-01-10 07:28:51] -rw-r--r--. 1 boinc boinc      8192 Jan 10 07:28 boinc_mmap_file
[2026-01-10 07:28:51] -rw-r--r--. 1 boinc boinc        27 Jan 10 07:28 wrapper_checkpoint.txt
[2026-01-10 07:28:51] -rw-------. 1 boinc boinc      4896 Jan 10 07:28 pilotlog.txt
[2026-01-10 07:28:51] -rw-------. 1 boinc boinc   1194739 Jan 10 07:28 log.47898826._037914.job.log.1
[2026-01-10 07:28:51] -rw-------. 1 boinc boinc       357 Jan 10 07:28 output.list
[2026-01-10 07:28:51] -rw-r--r--. 1 boinc boinc       620 Jan 10 07:28 runtime_log
[2026-01-10 07:28:51] -rw-------. 1 boinc boinc   1566720 Jan 10 07:28 result.tar.gz
[2026-01-10 07:28:51] -rw-r--r--. 1 boinc boinc      8791 Jan 10 07:28 runtime_log.err
[2026-01-10 07:28:51] -rw-------. 1 boinc boinc       644 Jan 10 07:28 Co6LDm1BJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEtgKDmvThajn.diag
[2026-01-10 07:28:51] -rw-r--r--. 1 boinc boinc     20727 Jan 10 07:28 stderr.txt
[2026-01-10 07:28:51] HITS file was successfully produced:
[2026-01-10 07:28:51] -rw-------. 1 boinc boinc 224259793 Jan 10 07:26 shared/HITS.pool.root.1
[2026-01-10 07:28:51]  *** Contents of shared directory: ***
[2026-01-10 07:28:51] total 441308
[2026-01-10 07:28:51] -rw-r--r--. 2 boinc boinc 225459207 Jan 10 05:09 ATLAS.root_0
[2026-01-10 07:28:51] -rw-r--r--. 2 boinc boinc     15847 Jan 10 05:09 start_atlas.sh
[2026-01-10 07:28:51] -rw-r--r--. 2 boinc boinc    592397 Jan 10 05:09 input.tar.gz
[2026-01-10 07:28:51] -rw-------. 1 boinc boinc 224259793 Jan 10 07:26 HITS.pool.root.1
[2026-01-10 07:28:51] -rw-------. 1 boinc boinc   1566720 Jan 10 07:28 result.tar.gz
07:28:53 (2642766): run_atlas exited; CPU time 45804.653107
07:28:53 (2642766): called boinc_finish(0)

</stderr_txt>
]]>

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