Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:53:22 (3131534): wrapper (7.7.26015): starting
05:53:22 (3131534): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 05:53:22] Arguments: --nthreads 3
[2026-01-10 05:53:22] Threads: 3
[2026-01-10 05:53:22] Checking for CVMFS
[2026-01-10 05:53:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 05:53:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 05:53:22] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 05:53:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 05:53:22] 2.9.2.0 2245490 3654 85812 154968 1 57 35040864 36864000 0 130560 0 2329735 99.987 140197 4818 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 05:53:22] CVMFS is ok
[2026-01-10 05:53:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 05:53:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 05:53:22] Further information can be found at the LHC@home message board.
[2026-01-10 05:53:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 05:53:22] Checking for apptainer binary...
[2026-01-10 05:53:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 05:53:22] Running /usr/bin/apptainer --version
[2026-01-10 05:53:22] apptainer version 1.4.1-1.1
[2026-01-10 05:53:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 05:53:22] thA331a
[2026-01-10 05:53:22] apptainer works
[2026-01-10 05:53:22] Set ATHENA_PROC_NUMBER=3
[2026-01-10 05:53:22] Set ATHENA_CORE_NUMBER=3
[2026-01-10 05:53:22] Starting ATLAS job with PandaID=6963188887
[2026-01-10 05:53:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 07:44:42]  *** The last 200 lines of the pilot log: ***
[2026-01-10 07:44:42] 2026-01-10 06:43:47,269 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 07:44:42] 2026-01-10 06:43:47,269 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 07:44:42] 2026-01-10 06:43:47,269 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 07:44:42] 2026-01-10 06:43:47,269 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 07:44:42] 2026-01-10 06:43:47,269 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 07:44:42] 2026-01-10 06:43:47,269 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 07:44:42] 2026-01-10 06:43:47,269 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 07:44:42] 2026-01-10 06:43:47,269 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 07:44:42] 2026-01-10 06:43:47,269 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 07:44:42] 2026-01-10 06:43:47,269 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 07:44:42] 2026-01-10 06:43:47,269 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 07:44:42] 2026-01-10 06:43:47,269 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 07:44:42] 2026-01-10 06:43:47,269 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 07:44:42] 2026-01-10 06:43:47,269 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 07:44:42] 2026-01-10 06:43:47,269 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 07:44:42] 2026-01-10 06:43:47,270 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 07:44:42] 2026-01-10 06:43:47,270 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 07:44:42] 2026-01-10 06:43:47,270 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 07:44:42] 2026-01-10 06:43:47,270 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 07:44:42] 2026-01-10 06:43:47,270 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 07:44:42] 2026-01-10 06:43:47,270 | INFO     | job 6963188887 has completed (purged errors)
[2026-01-10 07:44:42] 2026-01-10 06:43:47,270 | INFO     | overall cleanup function is called
[2026-01-10 07:44:42] 2026-01-10 06:43:48,276 | INFO     | --- collectZombieJob: --- 10, [3141705]
[2026-01-10 07:44:42] 2026-01-10 06:43:48,276 | INFO     | zombie collector waiting for pid 3141705
[2026-01-10 07:44:42] 2026-01-10 06:43:48,277 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 07:44:42] 2026-01-10 06:43:48,277 | INFO     | collected zombie processes
[2026-01-10 07:44:42] 2026-01-10 06:43:48,277 | INFO     | will attempt to kill all subprocesses of pid=3141705
[2026-01-10 07:44:42] 2026-01-10 06:43:48,319 | INFO     | process IDs to be killed: [3141705] (in reverse order)
[2026-01-10 07:44:42] 2026-01-10 06:43:48,342 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 07:44:42] 2026-01-10 06:43:48,342 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 07:44:42] 2026-01-10 06:43:48,343 | INFO     | did not find any defunct processes belonging to 3141705
[2026-01-10 07:44:42] 2026-01-10 06:43:48,344 | INFO     | did not find any defunct processes belonging to 3141705
[2026-01-10 07:44:42] 2026-01-10 06:43:48,344 | INFO     | ready for new job
[2026-01-10 07:44:42] 2026-01-10 06:43:48,344 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 07:44:42] 2026-01-10 06:43:48,345 | INFO     | ***************************************
[2026-01-10 07:44:42] 2026-01-10 06:43:48,345 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 07:44:42] 2026-01-10 06:43:48,345 | INFO     | ***************************************
[2026-01-10 07:44:42] 2026-01-10 06:43:48,345 | INFO     | 
[2026-01-10 07:44:42] 2026-01-10 06:43:48,346 | INFO     | architecture information:
[2026-01-10 07:44:42] 2026-01-10 06:43:48,346 | INFO     | executing command: cat /etc/os-release
[2026-01-10 07:44:42] 2026-01-10 06:43:48,354 | INFO     | cat /etc/os-release:
[2026-01-10 07:44:42] NAME="CentOS Linux"
[2026-01-10 07:44:42] VERSION="7 (Core)"
[2026-01-10 07:44:42] ID="centos"
[2026-01-10 07:44:42] ID_LIKE="rhel fedora"
[2026-01-10 07:44:42] VERSION_ID="7"
[2026-01-10 07:44:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 07:44:42] ANSI_COLOR="0;31"
[2026-01-10 07:44:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 07:44:42] HOME_URL="https://www.centos.org/"
[2026-01-10 07:44:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 07:44:42] 
[2026-01-10 07:44:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 07:44:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 07:44:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 07:44:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 07:44:42] 
[2026-01-10 07:44:42] 2026-01-10 06:43:48,354 | INFO     | ***************************************
[2026-01-10 07:44:42] 2026-01-10 06:43:48,857 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 07:44:42] 2026-01-10 06:43:48,870 | INFO     | sufficient remaining disk space (324894982144 B)
[2026-01-10 07:44:42] 2026-01-10 06:43:48,870 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 07:44:42] 2026-01-10 06:43:48,870 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 07:44:42] 2026-01-10 06:43:48,870 | INFO     | update_server=False
[2026-01-10 07:44:42] 2026-01-10 06:43:48,870 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 07:44:42] 2026-01-10 06:43:48,870 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-10 07:44:42] 2026-01-10 06:43:48,871 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 07:44:42] 2026-01-10 06:43:48,871 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 07:44:42] 2026-01-10 06:43:48,871 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 07:44:42] 2026-01-10 06:43:48,871 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:44:42] 2026-01-10 06:43:49,412 | INFO     | all data control threads have been joined
[2026-01-10 07:44:42] 2026-01-10 06:43:49,550 | INFO     | all payload control threads have been joined
[2026-01-10 07:44:42] 2026-01-10 06:43:49,796 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:44:42] 2026-01-10 06:43:49,797 | INFO     | aborting loop
[2026-01-10 07:44:42] 2026-01-10 06:43:49,821 | INFO     | all job control threads have been joined
[2026-01-10 07:44:42] 2026-01-10 06:43:49,876 | INFO     | [job] retrieve thread has finished
[2026-01-10 07:44:42] 2026-01-10 06:43:49,876 | INFO     | [job] queue monitor thread has finished
[2026-01-10 07:44:42] 2026-01-10 06:43:50,000 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 07:44:42] 2026-01-10 06:43:50,317 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 07:44:42] 2026-01-10 06:43:50,418 | INFO     | [data] control thread has finished
[2026-01-10 07:44:42] 2026-01-10 06:43:50,556 | INFO     | [payload] control thread has finished
[2026-01-10 07:44:42] 2026-01-10 06:43:50,695 | INFO     | [data] copytool_in thread has finished
[2026-01-10 07:44:42] 2026-01-10 06:43:50,801 | INFO     | [job] job monitor thread has finished
[2026-01-10 07:44:42] 2026-01-10 06:43:50,827 | INFO     | [job] control thread has finished
[2026-01-10 07:44:42] 2026-01-10 06:43:50,827 | INFO     | [payload] validate_post thread has finished
[2026-01-10 07:44:42] 2026-01-10 06:43:50,980 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 07:44:42] 2026-01-10 06:43:51,076 | INFO     | [payload] failed_post thread has finished
[2026-01-10 07:44:42] 2026-01-10 06:43:51,233 | INFO     | [job] validate thread has finished
[2026-01-10 07:44:42] 2026-01-10 06:43:51,262 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 07:44:42] 2026-01-10 06:43:51,343 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 07:44:42] 2026-01-10 06:43:52,323 | INFO     | [data] copytool_out thread has finished
[2026-01-10 07:44:42] 2026-01-10 06:43:54,985 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 07:44:42] 2026-01-10 06:43:59,738 | INFO     | job.realtimelogging is not enabled
[2026-01-10 07:44:42] 2026-01-10 06:44:00,744 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 07:44:42] 2026-01-10 06:44:35,657 | INFO     | [monitor] cgroup control has ended
[2026-01-10 07:44:42] 2026-01-10 06:44:37,446 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140715619583808)>', '<ExcThread(monitor, started 140715006883584)>']
[2026-01-10 07:44:42] 2026-01-10 06:44:38,127 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 07:44:42] 2026-01-10 06:44:38,127 | INFO     | [monitor] control thread has ended
[2026-01-10 07:44:42] 2026-01-10 06:44:42,465 | INFO     | all workflow threads have been joined
[2026-01-10 07:44:42] 2026-01-10 06:44:42,466 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 07:44:42] 2026-01-10 06:44:42,466 | INFO     | traces error code: 0
[2026-01-10 07:44:42] 2026-01-10 06:44:42,466 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 07:44:42] 2026-01-10 06:44:42,514 [wrapper] ==== pilot stdout END ====
[2026-01-10 07:44:42] 2026-01-10 06:44:42,516 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 07:44:42] 2026-01-10 06:44:42,518 [wrapper] pilotpid: 3135253
[2026-01-10 07:44:42] 2026-01-10 06:44:42,520 [wrapper] Pilot exit status: 0
[2026-01-10 07:44:42] 2026-01-10 06:44:42,528 [wrapper] pandaids: 6963188887
[2026-01-10 07:44:42] 2026-01-10 06:44:42,543 [wrapper] cleanup supervisor_pilot 3156041 3135254
[2026-01-10 07:44:42] 2026-01-10 06:44:42,546 [wrapper] Test setup, not cleaning
[2026-01-10 07:44:42] 2026-01-10 06:44:42,548 [wrapper] apfmon messages muted
[2026-01-10 07:44:42] 2026-01-10 06:44:42,550 [wrapper] ==== wrapper stdout END ====
[2026-01-10 07:44:42] 2026-01-10 06:44:42,553 [wrapper] ==== wrapper stderr END ====
[2026-01-10 07:44:42]  *** Error codes and diagnostics ***
[2026-01-10 07:44:42]     "exeErrorCode": 0,
[2026-01-10 07:44:42]     "exeErrorDiag": "",
[2026-01-10 07:44:42]     "pilotErrorCode": 0,
[2026-01-10 07:44:42]     "pilotErrorDiag": "",
[2026-01-10 07:44:42]  *** Listing of results directory ***
[2026-01-10 07:44:42] total 429912
[2026-01-10 07:44:42] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:21 queuedata.json
[2026-01-10 07:44:42] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 07:44:42] -rwx------ 1 boinc boinc     36322 Jan  9 05:22 runpilot2-wrapper.sh
[2026-01-10 07:44:42] -rw-r--r-- 1 boinc boinc       100 Jan 10 05:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 07:44:42] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 05:53 run_atlas
[2026-01-10 07:44:42] -rw-r--r-- 1 boinc boinc       105 Jan 10 05:53 job.xml
[2026-01-10 07:44:42] -rw-r--r-- 2 boinc boinc 222028643 Jan 10 05:53 EVNT.47898824._001452.pool.root.1
[2026-01-10 07:44:42] drwxrwx--x 2 boinc boinc      4096 Jan 10 05:53 shared
[2026-01-10 07:44:42] -rw-r--r-- 2 boinc boinc    592389 Jan 10 05:53 input.tar.gz
[2026-01-10 07:44:42] -rw-r--r-- 2 boinc boinc     15847 Jan 10 05:53 start_atlas.sh
[2026-01-10 07:44:42] -rw-r--r-- 1 boinc boinc         0 Jan 10 05:53 boinc_setup_complete
[2026-01-10 07:44:42] -rw-r--r-- 1 boinc boinc      6441 Jan 10 05:53 init_data.xml
[2026-01-10 07:44:42] -rw-r--r-- 1 boinc boinc         0 Jan 10 05:53 boinc_lockfile
[2026-01-10 07:44:42] -rw-r--r-- 1 boinc boinc      2517 Jan 10 05:53 pandaJob.out
[2026-01-10 07:44:42] -rw------- 1 boinc boinc    989374 Jan 10 05:53 agis_schedconf.cvmfs.json
[2026-01-10 07:44:42] -rw------- 1 boinc boinc   1516240 Jan 10 05:53 agis_ddmendpoints.agis.ALL.json
[2026-01-10 07:44:42] drwx------ 5 boinc boinc      4096 Jan 10 05:53 pilot3
[2026-01-10 07:44:42] -rw------- 1 boinc boinc        95 Jan 10 07:42 pilot_heartbeat.json
[2026-01-10 07:44:42] -rw------- 1 boinc boinc 211850537 Jan 10 07:43 HITS.47898826._037824.pool.root.1
[2026-01-10 07:44:42] -rw-r--r-- 1 boinc boinc       529 Jan 10 07:43 boinc_task_state.xml
[2026-01-10 07:44:42] -rw------- 1 boinc boinc      1017 Jan 10 07:43 memory_monitor_summary.json
[2026-01-10 07:44:42] -rw------- 1 boinc boinc    263105 Jan 10 07:43 log.47898826._037824.job.log.tgz.1
[2026-01-10 07:44:42] -rw------- 1 boinc boinc      7748 Jan 10 07:43 heartbeat.json
[2026-01-10 07:44:42] -rw-r--r-- 1 boinc boinc      8192 Jan 10 07:44 boinc_mmap_file
[2026-01-10 07:44:42] -rw-r--r-- 1 boinc boinc        27 Jan 10 07:44 wrapper_checkpoint.txt
[2026-01-10 07:44:42] -rw------- 1 boinc boinc      4628 Jan 10 07:44 pilotlog.txt
[2026-01-10 07:44:42] -rw------- 1 boinc boinc    956489 Jan 10 07:44 log.47898826._037824.job.log.1
[2026-01-10 07:44:42] -rw------- 1 boinc boinc       357 Jan 10 07:44 output.list
[2026-01-10 07:44:42] -rw-r--r-- 1 boinc boinc       620 Jan 10 07:44 runtime_log
[2026-01-10 07:44:42] -rw------- 1 boinc boinc   1239040 Jan 10 07:44 result.tar.gz
[2026-01-10 07:44:42] -rw-r--r-- 1 boinc boinc      8902 Jan 10 07:44 runtime_log.err
[2026-01-10 07:44:42] -rw------- 1 boinc boinc       660 Jan 10 07:44 XrzLDm1BJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmN7lKDmdmHfEo.diag
[2026-01-10 07:44:42] -rw-r--r-- 1 boinc boinc     12848 Jan 10 07:44 stderr.txt
[2026-01-10 07:44:42] HITS file was successfully produced:
[2026-01-10 07:44:42] -rw------- 1 boinc boinc 211850537 Jan 10 07:43 shared/HITS.pool.root.1
[2026-01-10 07:44:42]  *** Contents of shared directory: ***
[2026-01-10 07:44:42] total 425532
[2026-01-10 07:44:42] -rw-r--r-- 2 boinc boinc 222028643 Jan 10 05:53 ATLAS.root_0
[2026-01-10 07:44:42] -rw-r--r-- 2 boinc boinc    592389 Jan 10 05:53 input.tar.gz
[2026-01-10 07:44:42] -rw-r--r-- 2 boinc boinc     15847 Jan 10 05:53 start_atlas.sh
[2026-01-10 07:44:42] -rw------- 1 boinc boinc 211850537 Jan 10 07:43 HITS.pool.root.1
[2026-01-10 07:44:42] -rw------- 1 boinc boinc   1239040 Jan 10 07:44 result.tar.gz
07:44:44 (3131534): run_atlas exited; CPU time 19187.369404
07:44:44 (3131534): called boinc_finish(0)

</stderr_txt>
]]>

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