Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:22:44 (11496): wrapper (7.7.26015): starting
07:22:44 (11496): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 07:22:44] Arguments: --nthreads 8
[2026-01-10 07:22:44] Threads: 8
[2026-01-10 07:22:44] Checking for CVMFS
[2026-01-10 07:22:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 07:22:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 07:22:45] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 07:22:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 07:22:47] 2.11.2.0 28634 36489 99052 154970 3 84 16351223 25165824 899 130560 0 7935415 99.670 10370255 2586 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-10 07:22:47] CVMFS is ok
[2026-01-10 07:22:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 07:22:47] Checking for apptainer binary...
[2026-01-10 07:22:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 07:22:47] Running /usr/bin/apptainer --version
[2026-01-10 07:22:47] apptainer version 1.3.2-1.el7
[2026-01-10 07:22:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 07:22:53] cg-vwn465.simple-grid.lan
[2026-01-10 07:22:53] apptainer works
[2026-01-10 07:22:53] Set ATHENA_PROC_NUMBER=8
[2026-01-10 07:22:53] Set ATHENA_CORE_NUMBER=8
[2026-01-10 07:22:53] Starting ATLAS job with PandaID=6963188482
[2026-01-10 07:22:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 13:17:17]  *** The last 200 lines of the pilot log: ***
[2026-01-10 13:17:17] 2026-01-10 12:16:09,878 | INFO     | extracted standard info from prmon json
[2026-01-10 13:17:17] 2026-01-10 12:16:09,878 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 13:17:17] 2026-01-10 12:16:09,878 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 13:17:17] 2026-01-10 12:16:09,879 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 13:17:17] 2026-01-10 12:16:09,879 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 13:17:17] 2026-01-10 12:16:09,883 | INFO     | fitting pss+swap vs Time
[2026-01-10 13:17:17] 2026-01-10 12:16:09,883 | INFO     | sum of square deviations: 11450045382.0
[2026-01-10 13:17:17] 2026-01-10 12:16:09,885 | INFO     | sum of deviations: 149132139675.0
[2026-01-10 13:17:17] 2026-01-10 12:16:09,886 | INFO     | mean x: 1768037108.0
[2026-01-10 13:17:17] 2026-01-10 12:16:09,886 | INFO     | mean y: 2452593.8588588587
[2026-01-10 13:17:17] 2026-01-10 12:16:09,886 | INFO     | intersect: -23025504776.104256
[2026-01-10 13:17:17] 2026-01-10 12:16:09,886 | INFO     | chi2: 7.617796844172916
[2026-01-10 13:17:17] 2026-01-10 12:16:09,886 | INFO     | sum of square deviations: 10941980042.0
[2026-01-10 13:17:17] 2026-01-10 12:16:09,888 | INFO     | sum of deviations: 168311854103.00003
[2026-01-10 13:17:17] 2026-01-10 12:16:09,888 | INFO     | mean x: 1768036955.5
[2026-01-10 13:17:17] 2026-01-10 12:16:09,888 | INFO     | mean y: 2458270.237804878
[2026-01-10 13:17:17] 2026-01-10 12:16:09,888 | INFO     | intersect: -27193860582.527687
[2026-01-10 13:17:17] 2026-01-10 12:16:09,889 | INFO     | chi2: 6.897198511870705
[2026-01-10 13:17:17] 2026-01-10 12:16:09,889 | INFO     | current chi2=6.897198511870705 (change=9.45940600730798 %)
[2026-01-10 13:17:17] 2026-01-10 12:16:09,889 | INFO     | right removable region: 327
[2026-01-10 13:17:17] 2026-01-10 12:16:09,889 | INFO     | sum of square deviations: 10941980042.0
[2026-01-10 13:17:17] 2026-01-10 12:16:09,891 | INFO     | sum of deviations: 34069516198.999973
[2026-01-10 13:17:17] 2026-01-10 12:16:09,891 | INFO     | mean x: 1768037260.5
[2026-01-10 13:17:17] 2026-01-10 12:16:09,891 | INFO     | mean y: 2487111.0792682925
[2026-01-10 13:17:17] 2026-01-10 12:16:09,891 | INFO     | intersect: -5502565343.396803
[2026-01-10 13:17:17] 2026-01-10 12:16:09,892 | INFO     | chi2: 2.927222323143214
[2026-01-10 13:17:17] 2026-01-10 12:16:09,892 | INFO     | current chi2=2.927222323143214 (change=61.57389881849718 %)
[2026-01-10 13:17:17] 2026-01-10 12:16:09,892 | INFO     | sum of square deviations: 10449170802.0
[2026-01-10 13:17:17] 2026-01-10 12:16:09,906 | INFO     | sum of deviations: -38388044383.0
[2026-01-10 13:17:17] 2026-01-10 12:16:09,906 | INFO     | mean x: 1768037413.0
[2026-01-10 13:17:17] 2026-01-10 12:16:09,906 | INFO     | mean y: 2509466.2352941176
[2026-01-10 13:17:17] 2026-01-10 12:16:09,906 | INFO     | intersect: 6497905126.535699
[2026-01-10 13:17:17] 2026-01-10 12:16:09,907 | INFO     | chi2: 0.9454281920366252
[2026-01-10 13:17:17] 2026-01-10 12:16:09,907 | INFO     | current chi2=0.9454281920366252 (change=67.70220749678363 %)
[2026-01-10 13:17:17] 2026-01-10 12:16:09,907 | INFO     | sum of square deviations: 9971385099.5
[2026-01-10 13:17:17] 2026-01-10 12:16:09,909 | INFO     | sum of deviations: -39824852962.0
[2026-01-10 13:17:17] 2026-01-10 12:16:09,909 | INFO     | mean x: 1768037565.5
[2026-01-10 13:17:17] 2026-01-10 12:16:09,909 | INFO     | mean y: 2509899.1383647798
[2026-01-10 13:17:17] 2026-01-10 12:16:09,909 | INFO     | intersect: 7063899603.248843
[2026-01-10 13:17:17] 2026-01-10 12:16:09,909 | INFO     | chi2: 0.9133589998882408
[2026-01-10 13:17:17] 2026-01-10 12:16:09,909 | INFO     | current chi2=0.9133589998882408 (change=3.3920283336697983 %)
[2026-01-10 13:17:17] 2026-01-10 12:16:09,909 | INFO     | left removable region: 30
[2026-01-10 13:17:17] 2026-01-10 12:16:09,910 | INFO     | sum of square deviations: 8123493708.0
[2026-01-10 13:17:17] 2026-01-10 12:16:09,911 | INFO     | sum of deviations: 14083476931.000002
[2026-01-10 13:17:17] 2026-01-10 12:16:09,911 | INFO     | mean x: 1768037840.0
[2026-01-10 13:17:17] 2026-01-10 12:16:09,912 | INFO     | mean y: 2505113.2592592593
[2026-01-10 13:17:17] 2026-01-10 12:16:09,912 | INFO     | intersect: -3062693313.4045644
[2026-01-10 13:17:17] 2026-01-10 12:16:09,912 | INFO     | chi2: 0.001358287383759566
[2026-01-10 13:17:17] 2026-01-10 12:16:09,912 | INFO     | current memory leak: 1.73 B/s (using 297 data points, chi2=0.00)
[2026-01-10 13:17:17] 2026-01-10 12:16:09,912 | INFO     | could have reported an average CPU frequency of 2250 MHz (14 samples)
[2026-01-10 13:17:17] 2026-01-10 12:16:09,913 | INFO     | ..............................
[2026-01-10 13:17:17] 2026-01-10 12:16:09,913 | INFO     | . Timing measurements:
[2026-01-10 13:17:17] 2026-01-10 12:16:09,913 | INFO     | . get job = 0 s
[2026-01-10 13:17:17] 2026-01-10 12:16:09,913 | INFO     | . initial setup = 13 s
[2026-01-10 13:17:17] 2026-01-10 12:16:09,913 | INFO     | . payload setup = 149 s
[2026-01-10 13:17:17] 2026-01-10 12:16:09,913 | INFO     | . stage-in = 0 s
[2026-01-10 13:17:17] 2026-01-10 12:16:09,913 | INFO     | . payload execution = 20432 s
[2026-01-10 13:17:17] 2026-01-10 12:16:09,913 | INFO     | . stage-out = 4 s
[2026-01-10 13:17:17] 2026-01-10 12:16:09,913 | INFO     | . log creation = 1 s
[2026-01-10 13:17:17] 2026-01-10 12:16:09,913 | INFO     | ..............................
[2026-01-10 13:17:17] 2026-01-10 12:16:10,531 | INFO     | 
[2026-01-10 13:17:17] 2026-01-10 12:16:10,531 | INFO     | job summary report
[2026-01-10 13:17:17] 2026-01-10 12:16:10,531 | INFO     | --------------------------------------------------
[2026-01-10 13:17:17] 2026-01-10 12:16:10,531 | INFO     | PanDA job id: 6963188482
[2026-01-10 13:17:17] 2026-01-10 12:16:10,531 | INFO     | task id: 47898826
[2026-01-10 13:17:17] 2026-01-10 12:16:10,531 | INFO     | errors: (none)
[2026-01-10 13:17:17] 2026-01-10 12:16:10,531 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 13:17:17] 2026-01-10 12:16:10,532 | INFO     | pilot state: finished 
[2026-01-10 13:17:17] 2026-01-10 12:16:10,532 | INFO     | transexitcode: 0
[2026-01-10 13:17:17] 2026-01-10 12:16:10,532 | INFO     | exeerrorcode: 0
[2026-01-10 13:17:17] 2026-01-10 12:16:10,532 | INFO     | exeerrordiag: 
[2026-01-10 13:17:17] 2026-01-10 12:16:10,532 | INFO     | exitcode: 0
[2026-01-10 13:17:17] 2026-01-10 12:16:10,532 | INFO     | exitmsg: OK
[2026-01-10 13:17:17] 2026-01-10 12:16:10,532 | INFO     | cpuconsumptiontime: 77181 s
[2026-01-10 13:17:17] 2026-01-10 12:16:10,532 | INFO     | nevents: 400
[2026-01-10 13:17:17] 2026-01-10 12:16:10,532 | INFO     | neventsw: 0
[2026-01-10 13:17:17] 2026-01-10 12:16:10,533 | INFO     | pid: 21707
[2026-01-10 13:17:17] 2026-01-10 12:16:10,533 | INFO     | pgrp: 21707
[2026-01-10 13:17:17] 2026-01-10 12:16:10,533 | INFO     | corecount: 8
[2026-01-10 13:17:17] 2026-01-10 12:16:10,533 | INFO     | event service: False
[2026-01-10 13:17:17] 2026-01-10 12:16:10,533 | INFO     | sizes: {0: 2283744, 1: 2283999, 12: 2283999, 23: 2284027, 34: 2284055, 44: 2284083, 55: 2284239, 66: 2284267, 76: 2284295, 87: 2284351, 98: 2284379, 102: 2284949, 
[2026-01-10 13:17:17] 2026-01-10 12:16:10,533 | INFO     | --------------------------------------------------
[2026-01-10 13:17:17] 2026-01-10 12:16:10,533 | INFO     | 
[2026-01-10 13:17:17] 2026-01-10 12:16:10,533 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-01-10 13:17:17] 2026-01-10 12:16:10,827 | INFO     | time since job start (20919s) is within the limit (349056.0s)
[2026-01-10 13:17:17] 2026-01-10 12:16:10,935 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 13:17:17] 2026-01-10 12:16:10,935 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 13:17:17] 2026-01-10 12:16:10,935 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 13:17:17] 2026-01-10 12:16:10,936 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 13:17:17] 2026-01-10 12:16:10,936 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 13:17:17] 2026-01-10 12:16:10,936 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 13:17:17] 2026-01-10 12:16:10,936 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 13:17:17] 2026-01-10 12:16:10,936 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 13:17:17] 2026-01-10 12:16:10,936 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 13:17:17] 2026-01-10 12:16:10,936 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 13:17:17] 2026-01-10 12:16:10,936 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 13:17:17] 2026-01-10 12:16:10,936 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 13:17:17] 2026-01-10 12:16:10,936 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 13:17:17] 2026-01-10 12:16:10,937 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 13:17:17] 2026-01-10 12:16:10,937 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 13:17:17] 2026-01-10 12:16:10,937 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 13:17:17] 2026-01-10 12:16:10,937 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 13:17:17] 2026-01-10 12:16:10,937 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 13:17:17] 2026-01-10 12:16:10,937 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 13:17:17] 2026-01-10 12:16:10,937 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 13:17:17] 2026-01-10 12:16:10,937 | INFO     | job 6963188482 has completed (purged errors)
[2026-01-10 13:17:17] 2026-01-10 12:16:10,938 | INFO     | overall cleanup function is called
[2026-01-10 13:17:17] 2026-01-10 12:16:11,890 | INFO     | PID=15219 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 13:17:17] 2026-01-10 12:16:11,890 | INFO     | .. there are 2 such processes running
[2026-01-10 13:17:17] 2026-01-10 12:16:11,954 | INFO     | --- collectZombieJob: --- 10, [21707]
[2026-01-10 13:17:17] 2026-01-10 12:16:11,954 | INFO     | zombie collector waiting for pid 21707
[2026-01-10 13:17:17] 2026-01-10 12:16:11,954 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 13:17:17] 2026-01-10 12:16:11,954 | INFO     | collected zombie processes
[2026-01-10 13:17:17] 2026-01-10 12:16:11,954 | INFO     | will attempt to kill all subprocesses of pid=21707
[2026-01-10 13:17:17] 2026-01-10 12:16:12,042 | INFO     | process IDs to be killed: [21707] (in reverse order)
[2026-01-10 13:17:17] 2026-01-10 12:16:13,080 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 13:17:17] 2026-01-10 12:16:13,080 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 13:17:17] 2026-01-10 12:16:13,082 | INFO     | did not find any defunct processes belonging to 21707
[2026-01-10 13:17:17] 2026-01-10 12:16:13,084 | INFO     | did not find any defunct processes belonging to 21707
[2026-01-10 13:17:17] 2026-01-10 12:16:13,084 | INFO     | ready for new job
[2026-01-10 13:17:17] 2026-01-10 12:16:13,085 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 13:17:17] 2026-01-10 12:16:13,087 | INFO     | ***************************************
[2026-01-10 13:17:17] 2026-01-10 12:16:13,087 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 13:17:17] 2026-01-10 12:16:13,087 | INFO     | ***************************************
[2026-01-10 13:17:17] 2026-01-10 12:16:13,087 | INFO     | 
[2026-01-10 13:17:17] 2026-01-10 12:16:13,088 | INFO     | pilot is running in a VM
[2026-01-10 13:17:17] 2026-01-10 12:16:13,088 | INFO     | architecture information:
[2026-01-10 13:17:17] 2026-01-10 12:16:13,102 | INFO     | executing command: cat /etc/os-release
[2026-01-10 13:17:17] 2026-01-10 12:16:13,358 | INFO     | cat /etc/os-release:
[2026-01-10 13:17:17] NAME="CentOS Linux"
[2026-01-10 13:17:17] VERSION="7 (Core)"
[2026-01-10 13:17:17] ID="centos"
[2026-01-10 13:17:17] ID_LIKE="rhel fedora"
[2026-01-10 13:17:17] VERSION_ID="7"
[2026-01-10 13:17:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 13:17:17] ANSI_COLOR="0;31"
[2026-01-10 13:17:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 13:17:17] HOME_URL="https://www.centos.org/"
[2026-01-10 13:17:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 13:17:17] 
[2026-01-10 13:17:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 13:17:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 13:17:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 13:17:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 13:17:17] 
[2026-01-10 13:17:17] 2026-01-10 12:16:13,358 | INFO     | ***************************************
[2026-01-10 13:17:17] 2026-01-10 12:16:13,861 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-01-10 13:17:17] 2026-01-10 12:16:14,156 | INFO     | sufficient remaining disk space (496000565248 B)
[2026-01-10 13:17:17] 2026-01-10 12:16:14,156 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 13:17:17] 2026-01-10 12:16:14,157 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 13:17:17] 2026-01-10 12:16:14,157 | INFO     | update_server=False
[2026-01-10 13:17:17] 2026-01-10 12:16:14,157 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 13:17:17] 2026-01-10 12:16:14,157 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:17:17] 2026-01-10 12:16:14,157 | INFO     | aborting loop
[2026-01-10 13:17:17] 2026-01-10 12:16:14,298 | INFO     | all data control threads have been joined
[2026-01-10 13:17:17] 2026-01-10 12:16:14,732 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 13:17:17] 2026-01-10 12:16:14,798 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 13:17:17] 2026-01-10 12:16:14,995 | INFO     | all payload control threads have been joined
[2026-01-10 13:17:17] 2026-01-10 12:16:15,107 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:17:17] 2026-01-10 12:16:15,163 | INFO     | [job] retrieve thread has finished
[2026-01-10 13:17:17] 2026-01-10 12:16:15,163 | INFO     | [job] job monitor thread has finished
[2026-01-10 13:17:17] 2026-01-10 12:16:15,168 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 13:17:17] 2026-01-10 12:16:15,174 | INFO     | all job control threads have been joined
[2026-01-10 13:17:17] 2026-01-10 12:16:15,186 | INFO     | [data] copytool_in thread has finished
[2026-01-10 13:17:17] 2026-01-10 12:16:15,203 | INFO     | [job] validate thread has finished
[2026-01-10 13:17:17] 2026-01-10 12:16:15,304 | INFO     | [data] control thread has finished
[2026-01-10 13:17:17] 2026-01-10 12:16:15,380 | INFO     | [payload] validate_post thread has finished
[2026-01-10 13:17:17] 2026-01-10 12:16:15,453 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 13:17:17] 2026-01-10 12:16:15,925 | INFO     | [payload] failed_post thread has finished
[2026-01-10 13:17:17] 2026-01-10 12:16:16,001 | INFO     | [payload] control thread has finished
[2026-01-10 13:17:17] 2026-01-10 12:16:16,113 | INFO     | [job] queue monitor thread has finished
[2026-01-10 13:17:17] 2026-01-10 12:16:16,180 | INFO     | [job] control thread has finished
[2026-01-10 13:17:17] 2026-01-10 12:16:16,272 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 13:17:17] 2026-01-10 12:16:16,739 | INFO     | [data] copytool_out thread has finished
[2026-01-10 13:17:17] 2026-01-10 12:16:18,807 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 13:17:17] 2026-01-10 12:16:24,391 | INFO     | job.realtimelogging is not enabled
[2026-01-10 13:17:17] 2026-01-10 12:16:25,397 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 13:17:17] 2026-01-10 12:16:43,984 | INFO     | PID=15219 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 13:17:17] 2026-01-10 12:16:43,984 | INFO     | .. there are 2 such processes running
[2026-01-10 13:17:17] 2026-01-10 12:16:43,984 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 13:17:17] 2026-01-10 12:16:43,985 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 13:17:17] 2026-01-10 12:16:43,985 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 13:17:17] 2026-01-10 12:17:07,130 | INFO     | [monitor] cgroup control has ended
[2026-01-10 13:17:17] 2026-01-10 12:17:08,137 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140053801531200)>', '<ExcThread(monitor, started 140053196019456)>']
[2026-01-10 13:17:17] 2026-01-10 12:17:09,135 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 13:17:17] 2026-01-10 12:17:09,135 | INFO     | [monitor] control thread has ended
[2026-01-10 13:17:17] 2026-01-10 12:17:13,163 | INFO     | all workflow threads have been joined
[2026-01-10 13:17:17] 2026-01-10 12:17:13,163 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 13:17:17] 2026-01-10 12:17:13,163 | INFO     | traces error code: 0
[2026-01-10 13:17:17] 2026-01-10 12:17:13,163 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 13:17:17] 2026-01-10 12:17:13,557 [wrapper] ==== pilot stdout END ====
[2026-01-10 13:17:17] 2026-01-10 12:17:13,613 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 13:17:17] 2026-01-10 12:17:13,659 [wrapper] pilotpid: 15219
[2026-01-10 13:17:17] 2026-01-10 12:17:13,747 [wrapper] Pilot exit status: 0
[2026-01-10 13:17:17] 2026-01-10 12:17:14,142 [wrapper] pandaids: 6963188482
[2026-01-10 13:17:17] 2026-01-10 12:17:15,185 [wrapper] cleanup supervisor_pilot 20810 15220
[2026-01-10 13:17:17] 2026-01-10 12:17:15,303 [wrapper] Test setup, not cleaning
[2026-01-10 13:17:17] 2026-01-10 12:17:15,416 [wrapper] apfmon messages muted
[2026-01-10 13:17:17] 2026-01-10 12:17:15,497 [wrapper] ==== wrapper stdout END ====
[2026-01-10 13:17:17] 2026-01-10 12:17:15,597 [wrapper] ==== wrapper stderr END ====
[2026-01-10 13:17:17]  *** Error codes and diagnostics ***
[2026-01-10 13:17:17]     "exeErrorCode": 0,
[2026-01-10 13:17:17]     "exeErrorDiag": "",
[2026-01-10 13:17:17]     "pilotErrorCode": 0,
[2026-01-10 13:17:17]     "pilotErrorDiag": "",
[2026-01-10 13:17:17]  *** Listing of results directory ***
[2026-01-10 13:17:17] total 450992
[2026-01-10 13:17:17] -rw-r--r--. 1 boinc boinc      5112 Jan  9 05:21 queuedata.json
[2026-01-10 13:17:17] -rw-r--r--. 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 13:17:17] -rwx------. 1 boinc boinc     36322 Jan  9 05:22 runpilot2-wrapper.sh
[2026-01-10 13:17:17] -rw-r--r--. 1 boinc boinc       100 Jan 10 07:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 13:17:17] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 07:22 run_atlas
[2026-01-10 13:17:17] -rw-r--r--. 1 boinc boinc       105 Jan 10 07:22 job.xml
[2026-01-10 13:17:17] -rw-r--r--. 1 boinc boinc      6391 Jan 10 07:22 init_data.xml
[2026-01-10 13:17:17] -rw-r--r--. 2 boinc boinc 227403271 Jan 10 07:22 EVNT.47898824._001441.pool.root.1
[2026-01-10 13:17:17] -rw-r--r--. 2 boinc boinc     15847 Jan 10 07:22 start_atlas.sh
[2026-01-10 13:17:17] drwxrwx--x. 2 boinc boinc        68 Jan 10 07:22 shared
[2026-01-10 13:17:17] -rw-r--r--. 2 boinc boinc    592394 Jan 10 07:22 input.tar.gz
[2026-01-10 13:17:17] -rw-r--r--. 1 boinc boinc         0 Jan 10 07:22 boinc_lockfile
[2026-01-10 13:17:17] -rw-r--r--. 1 boinc boinc      2520 Jan 10 07:22 pandaJob.out
[2026-01-10 13:17:17] -rw-------. 1 boinc boinc    989374 Jan 10 07:27 agis_schedconf.cvmfs.json
[2026-01-10 13:17:17] drwx------. 5 boinc boinc      4096 Jan 10 07:27 pilot3
[2026-01-10 13:17:17] -rw-------. 1 boinc boinc 223850951 Jan 10 13:12 HITS.47898826._037569.pool.root.1
[2026-01-10 13:17:17] -rw-r--r--. 1 boinc boinc       531 Jan 10 13:13 boinc_task_state.xml
[2026-01-10 13:17:17] -rw-------. 1 boinc boinc      1012 Jan 10 13:14 memory_monitor_summary.json
[2026-01-10 13:17:17] -rw-------. 1 boinc boinc   1516240 Jan 10 13:14 agis_ddmendpoints.agis.ALL.json
[2026-01-10 13:17:17] -rw-------. 1 boinc boinc    549732 Jan 10 13:14 log.47898826._037569.job.log.tgz.1
[2026-01-10 13:17:17] -rw-------. 1 boinc boinc      7776 Jan 10 13:16 heartbeat.json
[2026-01-10 13:17:17] -rw-------. 1 boinc boinc        95 Jan 10 13:16 pilot_heartbeat.json
[2026-01-10 13:17:17] -rw-r--r--. 1 boinc boinc        28 Jan 10 13:17 wrapper_checkpoint.txt
[2026-01-10 13:17:17] -rw-r--r--. 1 boinc boinc      8192 Jan 10 13:17 boinc_mmap_file
[2026-01-10 13:17:17] -rw-------. 1 boinc boinc      4956 Jan 10 13:17 pilotlog.txt
[2026-01-10 13:17:17] -rw-------. 1 boinc boinc   2780101 Jan 10 13:17 log.47898826._037569.job.log.1
[2026-01-10 13:17:17] -rw-------. 1 boinc boinc       357 Jan 10 13:17 output.list
[2026-01-10 13:17:17] -rw-r--r--. 1 boinc boinc       620 Jan 10 13:17 runtime_log
[2026-01-10 13:17:17] -rw-------. 1 boinc boinc   3348480 Jan 10 13:17 result.tar.gz
[2026-01-10 13:17:17] -rw-r--r--. 1 boinc boinc      8817 Jan 10 13:17 runtime_log.err
[2026-01-10 13:17:17] -rw-------. 1 boinc boinc       657 Jan 10 13:17 HRLKDmoBJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmorgKDmSvmGen.diag
[2026-01-10 13:17:17] -rw-r--r--. 1 boinc boinc     20808 Jan 10 13:17 stderr.txt
[2026-01-10 13:17:17] HITS file was successfully produced:
[2026-01-10 13:17:17] -rw-------. 1 boinc boinc 223850951 Jan 10 13:12 shared/HITS.pool.root.1
[2026-01-10 13:17:17]  *** Contents of shared directory: ***
[2026-01-10 13:17:17] total 444552
[2026-01-10 13:17:17] -rw-r--r--. 2 boinc boinc 227403271 Jan 10 07:22 ATLAS.root_0
[2026-01-10 13:17:17] -rw-r--r--. 2 boinc boinc     15847 Jan 10 07:22 start_atlas.sh
[2026-01-10 13:17:17] -rw-r--r--. 2 boinc boinc    592394 Jan 10 07:22 input.tar.gz
[2026-01-10 13:17:17] -rw-------. 1 boinc boinc 223850951 Jan 10 13:12 HITS.pool.root.1
[2026-01-10 13:17:17] -rw-------. 1 boinc boinc   3348480 Jan 10 13:17 result.tar.gz
13:17:18 (11496): run_atlas exited; CPU time 77370.863541
13:17:18 (11496): called boinc_finish(0)

</stderr_txt>
]]>

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