Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:49:35 (4063406): wrapper (7.7.26015): starting
13:49:35 (4063406): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 13:49:35] Arguments: --nthreads 8
[2026-01-09 13:49:35] Threads: 8
[2026-01-09 13:49:35] Checking for CVMFS
[2026-01-09 13:49:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 13:49:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 13:49:36] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 13:49:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 13:49:36] 2.13.3.0 12448 23263 223844 154953 1 62 28542126 40960000 26967 16776704 0 88945092 99.660 80104637 37528 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 13:49:36] CVMFS is ok
[2026-01-09 13:49:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 13:49:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 13:49:36] Further information can be found at the LHC@home message board.
[2026-01-09 13:49:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 13:49:36] Checking for apptainer binary...
[2026-01-09 13:49:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 13:49:36] Running /usr/bin/apptainer --version
[2026-01-09 13:49:37] apptainer version 1.4.5-2.el9
[2026-01-09 13:49:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 13:49:37] c-212-19.aglt2.org
[2026-01-09 13:49:37] apptainer works
[2026-01-09 13:49:37] Set ATHENA_PROC_NUMBER=8
[2026-01-09 13:49:37] Set ATHENA_CORE_NUMBER=8
[2026-01-09 13:49:37] Starting ATLAS job with PandaID=6963156477
[2026-01-09 13:49:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:40:07 (4063406): BOINC client no longer exists - exiting
17:40:07 (4063406): timer handler: client dead, exiting
17:49:33 (971520): wrapper (7.7.26015): starting
17:49:33 (971520): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 17:49:34] Arguments: --nthreads 8
[2026-01-09 17:49:34] Threads: 8
[2026-01-09 17:49:34] This job has been restarted, cleaning up previous attempt
[2026-01-09 17:49:34] Checking for CVMFS
[2026-01-09 17:49:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 17:49:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 17:49:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 17:49:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 17:49:34] 2.13.3.0 12448 23503 222636 154959 2 176 23779552 40960000 22819 16776704 0 89681648 99.660 81386202 37879 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 17:49:34] CVMFS is ok
[2026-01-09 17:49:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 17:49:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 17:49:34] Further information can be found at the LHC@home message board.
[2026-01-09 17:49:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 17:49:34] Checking for apptainer binary...
[2026-01-09 17:49:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 17:49:34] Running /usr/bin/apptainer --version
[2026-01-09 17:49:34] apptainer version 1.4.5-2.el9
[2026-01-09 17:49:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 17:49:34] c-212-19.aglt2.org
[2026-01-09 17:49:34] apptainer works
[2026-01-09 17:49:34] Set ATHENA_PROC_NUMBER=8
[2026-01-09 17:49:34] Set ATHENA_CORE_NUMBER=8
[2026-01-09 17:49:34] Starting ATLAS job with PandaID=6963156477
[2026-01-09 17:49:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 21:14:24]  *** The last 200 lines of the pilot log: ***
[2026-01-09 21:14:24] 2026-01-10 02:13:46,563 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 21:14:24] 2026-01-10 02:13:46,575 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3280.882208333334
[2026-01-09 21:14:24] 2026-01-10 02:13:46,588 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6963156477/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 21:14:24] 2026-01-10 02:13:46,588 | INFO     | extracted standard info from prmon json
[2026-01-09 21:14:24] 2026-01-10 02:13:46,588 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 21:14:24] 2026-01-10 02:13:46,589 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 21:14:24] 2026-01-10 02:13:46,589 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 21:14:24] 2026-01-10 02:13:46,589 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 21:14:24] 2026-01-10 02:13:46,595 | INFO     | fitting pss+swap vs Time
[2026-01-09 21:14:24] 2026-01-10 02:13:46,596 | INFO     | sum of square deviations: 2480634481.9550056
[2026-01-09 21:14:24] 2026-01-10 02:13:46,597 | INFO     | sum of deviations: 17444993572.295006
[2026-01-09 21:14:24] 2026-01-10 02:13:46,598 | INFO     | mean x: 1768005097.515
[2026-01-09 21:14:24] 2026-01-10 02:13:46,598 | INFO     | mean y: 2474858.735
[2026-01-09 21:14:24] 2026-01-10 02:13:46,598 | INFO     | intersect: -12430972223.572153
[2026-01-09 21:14:24] 2026-01-10 02:13:46,598 | INFO     | chi2: 2.10105096357234
[2026-01-09 21:14:24] 2026-01-10 02:13:46,598 | INFO     | sum of square deviations: 2299199436.9538527
[2026-01-09 21:14:24] 2026-01-10 02:13:46,599 | INFO     | sum of deviations: 30577437639.64616
[2026-01-09 21:14:24] 2026-01-10 02:13:46,599 | INFO     | mean x: 1768004945.0153847
[2026-01-09 21:14:24] 2026-01-10 02:13:46,599 | INFO     | mean y: 2485659.4512820514
[2026-01-09 21:14:24] 2026-01-10 02:13:46,599 | INFO     | intersect: -23510507638.954357
[2026-01-09 21:14:24] 2026-01-10 02:13:46,600 | INFO     | chi2: 1.2470894973226834
[2026-01-09 21:14:24] 2026-01-10 02:13:46,600 | INFO     | current chi2=1.2470894973226834 (change=40.644490831278894 %)
[2026-01-09 21:14:24] 2026-01-10 02:13:46,600 | INFO     | sum of square deviations: 2126834329.4526334
[2026-01-09 21:14:24] 2026-01-10 02:13:46,632 | INFO     | sum of deviations: 29531706801.873695
[2026-01-09 21:14:24] 2026-01-10 02:13:46,632 | INFO     | mean x: 1768004792.5157895
[2026-01-09 21:14:24] 2026-01-10 02:13:46,632 | INFO     | mean y: 2484734.042105263
[2026-01-09 21:14:24] 2026-01-10 02:13:46,633 | INFO     | intersect: -24546770670.50145
[2026-01-09 21:14:24] 2026-01-10 02:13:46,633 | INFO     | chi2: 1.2476938059917608
[2026-01-09 21:14:24] 2026-01-10 02:13:46,633 | INFO     | current chi2=1.2476938059917608 (change=-0.048457522124500226 %)
[2026-01-09 21:14:24] 2026-01-10 02:13:46,633 | INFO     | right removable region: 189
[2026-01-09 21:14:24] 2026-01-10 02:13:46,633 | INFO     | sum of square deviations: 2299197606.9538527
[2026-01-09 21:14:24] 2026-01-10 02:13:46,634 | INFO     | sum of deviations: -9395384759.061539
[2026-01-09 21:14:24] 2026-01-10 02:13:46,634 | INFO     | mean x: 1768005250.0153847
[2026-01-09 21:14:24] 2026-01-10 02:13:46,634 | INFO     | mean y: 2497157.3538461537
[2026-01-09 21:14:24] 2026-01-10 02:13:46,634 | INFO     | intersect: 7227230485.927084
[2026-01-09 21:14:24] 2026-01-10 02:13:46,635 | INFO     | chi2: 0.8921287635078802
[2026-01-09 21:14:24] 2026-01-10 02:13:46,635 | INFO     | current chi2=0.8921287635078802 (change=57.5389279472295 %)
[2026-01-09 21:14:24] 2026-01-10 02:13:46,635 | INFO     | sum of square deviations: 2126830669.4526334
[2026-01-09 21:14:24] 2026-01-10 02:13:46,653 | INFO     | sum of deviations: -10114194565.69474
[2026-01-09 21:14:24] 2026-01-10 02:13:46,653 | INFO     | mean x: 1768005402.5157895
[2026-01-09 21:14:24] 2026-01-10 02:13:46,653 | INFO     | mean y: 2497763.7315789475
[2026-01-09 21:14:24] 2026-01-10 02:13:46,654 | INFO     | intersect: 8410290114.613131
[2026-01-09 21:14:24] 2026-01-10 02:13:46,654 | INFO     | chi2: 0.8839482804479489
[2026-01-09 21:14:24] 2026-01-10 02:13:46,654 | INFO     | current chi2=0.8839482804479489 (change=0.9169621465589013 %)
[2026-01-09 21:14:24] 2026-01-10 02:13:46,654 | INFO     | left removable region: 20
[2026-01-09 21:14:24] 2026-01-10 02:13:46,654 | INFO     | sum of square deviations: 1496688804.9467423
[2026-01-09 21:14:24] 2026-01-10 02:13:46,655 | INFO     | sum of deviations: 5530835737.532545
[2026-01-09 21:14:24] 2026-01-10 02:13:46,655 | INFO     | mean x: 1768005372.0177515
[2026-01-09 21:14:24] 2026-01-10 02:13:46,655 | INFO     | mean y: 2506260.822485207
[2026-01-09 21:14:24] 2026-01-10 02:13:46,655 | INFO     | intersect: -6530947629.783224
[2026-01-09 21:14:24] 2026-01-10 02:13:46,656 | INFO     | chi2: 0.002014539955038427
[2026-01-09 21:14:24] 2026-01-10 02:13:46,656 | INFO     | current memory leak: 3.70 B/s (using 169 data points, chi2=0.00)
[2026-01-09 21:14:24] 2026-01-10 02:13:46,672 | INFO     | could have reported an average CPU frequency of 3279 MHz (10 samples)
[2026-01-09 21:14:24] 2026-01-10 02:13:46,673 | INFO     | ..............................
[2026-01-09 21:14:24] 2026-01-10 02:13:46,673 | INFO     | . Timing measurements:
[2026-01-09 21:14:24] 2026-01-10 02:13:46,673 | INFO     | . get job = 0 s
[2026-01-09 21:14:24] 2026-01-10 02:13:46,673 | INFO     | . initial setup = 2 s
[2026-01-09 21:14:24] 2026-01-10 02:13:46,673 | INFO     | . payload setup = 11 s
[2026-01-09 21:14:24] 2026-01-10 02:13:46,673 | INFO     | . stage-in = 0 s
[2026-01-09 21:14:24] 2026-01-10 02:13:46,673 | INFO     | . payload execution = 12187 s
[2026-01-09 21:14:24] 2026-01-10 02:13:46,673 | INFO     | . stage-out = 3 s
[2026-01-09 21:14:24] 2026-01-10 02:13:46,673 | INFO     | . log creation = 0 s
[2026-01-09 21:14:24] 2026-01-10 02:13:46,673 | INFO     | ..............................
[2026-01-09 21:14:24] 2026-01-10 02:13:46,846 | INFO     | time since job start (12239s) is within the limit (349056.0s)
[2026-01-09 21:14:24] 2026-01-10 02:13:46,932 | INFO     | 
[2026-01-09 21:14:24] 2026-01-10 02:13:46,932 | INFO     | job summary report
[2026-01-09 21:14:24] 2026-01-10 02:13:46,932 | INFO     | --------------------------------------------------
[2026-01-09 21:14:24] 2026-01-10 02:13:46,933 | INFO     | PanDA job id: 6963156477
[2026-01-09 21:14:24] 2026-01-10 02:13:46,933 | INFO     | task id: 47898826
[2026-01-09 21:14:24] 2026-01-10 02:13:46,933 | INFO     | errors: (none)
[2026-01-09 21:14:24] 2026-01-10 02:13:46,933 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 21:14:24] 2026-01-10 02:13:46,933 | INFO     | pilot state: finished 
[2026-01-09 21:14:24] 2026-01-10 02:13:46,933 | INFO     | transexitcode: 0
[2026-01-09 21:14:24] 2026-01-10 02:13:46,933 | INFO     | exeerrorcode: 0
[2026-01-09 21:14:24] 2026-01-10 02:13:46,933 | INFO     | exeerrordiag: 
[2026-01-09 21:14:24] 2026-01-10 02:13:46,933 | INFO     | exitcode: 0
[2026-01-09 21:14:24] 2026-01-10 02:13:46,933 | INFO     | exitmsg: OK
[2026-01-09 21:14:24] 2026-01-10 02:13:46,933 | INFO     | cpuconsumptiontime: 44752 s
[2026-01-09 21:14:24] 2026-01-10 02:13:46,933 | INFO     | nevents: 400
[2026-01-09 21:14:24] 2026-01-10 02:13:46,933 | INFO     | neventsw: 0
[2026-01-09 21:14:24] 2026-01-10 02:13:46,934 | INFO     | pid: 1034600
[2026-01-09 21:14:24] 2026-01-10 02:13:46,934 | INFO     | pgrp: 1034600
[2026-01-09 21:14:24] 2026-01-10 02:13:46,934 | INFO     | corecount: 8
[2026-01-09 21:14:24] 2026-01-10 02:13:46,935 | INFO     | event service: False
[2026-01-09 21:14:24] 2026-01-10 02:13:46,935 | INFO     | sizes: {0: 2283797, 1: 2283996, 5: 2284258, 11: 2284314, 12201: 2314273, 12202: 2314272, 12205: 2323454, 12207: 2323510, 12219: 2323704}
[2026-01-09 21:14:24] 2026-01-10 02:13:46,935 | INFO     | --------------------------------------------------
[2026-01-09 21:14:24] 2026-01-10 02:13:46,935 | INFO     | 
[2026-01-09 21:14:24] 2026-01-10 02:13:46,935 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-01-09 21:14:24] 2026-01-10 02:13:47,005 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 21:14:24] 2026-01-10 02:13:47,005 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 21:14:24] 2026-01-10 02:13:47,005 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 21:14:24] 2026-01-10 02:13:47,005 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 21:14:24] 2026-01-10 02:13:47,005 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 21:14:24] 2026-01-10 02:13:47,005 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 21:14:24] 2026-01-10 02:13:47,005 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 21:14:24] 2026-01-10 02:13:47,005 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 21:14:24] 2026-01-10 02:13:47,005 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 21:14:24] 2026-01-10 02:13:47,006 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 21:14:24] 2026-01-10 02:13:47,006 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 21:14:24] 2026-01-10 02:13:47,006 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 21:14:24] 2026-01-10 02:13:47,006 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 21:14:24] 2026-01-10 02:13:47,006 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 21:14:24] 2026-01-10 02:13:47,006 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 21:14:24] 2026-01-10 02:13:47,006 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 21:14:24] 2026-01-10 02:13:47,006 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 21:14:24] 2026-01-10 02:13:47,006 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 21:14:24] 2026-01-10 02:13:47,006 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 21:14:24] 2026-01-10 02:13:47,006 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 21:14:24] 2026-01-10 02:13:47,007 | INFO     | job 6963156477 has completed (purged errors)
[2026-01-09 21:14:24] 2026-01-10 02:13:47,007 | INFO     | overall cleanup function is called
[2026-01-09 21:14:24] 2026-01-10 02:13:48,020 | INFO     | --- collectZombieJob: --- 10, [1034600]
[2026-01-09 21:14:24] 2026-01-10 02:13:48,021 | INFO     | zombie collector waiting for pid 1034600
[2026-01-09 21:14:24] 2026-01-10 02:13:48,021 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 21:14:24] 2026-01-10 02:13:48,021 | INFO     | collected zombie processes
[2026-01-09 21:14:24] 2026-01-10 02:13:48,021 | INFO     | will attempt to kill all subprocesses of pid=1034600
[2026-01-09 21:14:24] 2026-01-10 02:13:49,370 | INFO     | process IDs to be killed: [1034600] (in reverse order)
[2026-01-09 21:14:24] 2026-01-10 02:13:49,581 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 21:14:24] 2026-01-10 02:13:49,581 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 21:14:24] 2026-01-10 02:13:49,690 | INFO     | did not find any defunct processes belonging to 1034600
[2026-01-09 21:14:24] 2026-01-10 02:13:49,817 | INFO     | did not find any defunct processes belonging to 1034600
[2026-01-09 21:14:24] 2026-01-10 02:13:49,817 | INFO     | ready for new job
[2026-01-09 21:14:24] 2026-01-10 02:13:49,817 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 21:14:24] 2026-01-10 02:13:49,819 | INFO     | ***************************************
[2026-01-09 21:14:24] 2026-01-10 02:13:49,819 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 21:14:24] 2026-01-10 02:13:49,819 | INFO     | ***************************************
[2026-01-09 21:14:24] 2026-01-10 02:13:49,819 | INFO     | 
[2026-01-09 21:14:24] 2026-01-10 02:13:49,824 | INFO     | architecture information:
[2026-01-09 21:14:24] 2026-01-10 02:13:49,824 | INFO     | executing command: cat /etc/os-release
[2026-01-09 21:14:24] 2026-01-10 02:13:49,867 | INFO     | cat /etc/os-release:
[2026-01-09 21:14:24] NAME="CentOS Linux"
[2026-01-09 21:14:24] VERSION="7 (Core)"
[2026-01-09 21:14:24] ID="centos"
[2026-01-09 21:14:24] ID_LIKE="rhel fedora"
[2026-01-09 21:14:24] VERSION_ID="7"
[2026-01-09 21:14:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 21:14:24] ANSI_COLOR="0;31"
[2026-01-09 21:14:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 21:14:24] HOME_URL="https://www.centos.org/"
[2026-01-09 21:14:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 21:14:24] 
[2026-01-09 21:14:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 21:14:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 21:14:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 21:14:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 21:14:24] 
[2026-01-09 21:14:24] 2026-01-10 02:13:49,868 | INFO     | ***************************************
[2026-01-09 21:14:24] 2026-01-10 02:13:50,371 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-01-09 21:14:24] 2026-01-10 02:13:50,409 | INFO     | sufficient remaining disk space (126524325888 B)
[2026-01-09 21:14:24] 2026-01-10 02:13:50,409 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 21:14:24] 2026-01-10 02:13:50,409 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 21:14:24] 2026-01-10 02:13:50,409 | INFO     | update_server=False
[2026-01-09 21:14:24] 2026-01-10 02:13:50,409 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 21:14:24] 2026-01-10 02:13:50,410 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 21:14:24] 2026-01-10 02:13:50,410 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:14:24] 2026-01-10 02:13:50,410 | INFO     | aborting loop
[2026-01-09 21:14:24] 2026-01-10 02:13:50,882 | INFO     | all data control threads have been joined
[2026-01-09 21:14:24] 2026-01-10 02:13:50,898 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 21:14:24] 2026-01-10 02:13:51,415 | INFO     | [job] retrieve thread has finished
[2026-01-09 21:14:24] 2026-01-10 02:13:51,424 | INFO     | [job] job monitor thread has finished
[2026-01-09 21:14:24] 2026-01-10 02:13:51,554 | INFO     | [payload] validate_post thread has finished
[2026-01-09 21:14:24] 2026-01-10 02:13:51,609 | INFO     | all job control threads have been joined
[2026-01-09 21:14:24] 2026-01-10 02:13:51,613 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 21:14:24] 2026-01-10 02:13:51,753 | INFO     | all payload control threads have been joined
[2026-01-09 21:14:24] 2026-01-10 02:13:51,797 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 21:14:24] 2026-01-10 02:13:51,877 | INFO     | [payload] failed_post thread has finished
[2026-01-09 21:14:24] 2026-01-10 02:13:51,888 | INFO     | [data] control thread has finished
[2026-01-09 21:14:24] 2026-01-10 02:13:51,957 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:14:24] 2026-01-10 02:13:52,067 | INFO     | [data] copytool_in thread has finished
[2026-01-09 21:14:24] 2026-01-10 02:13:52,279 | INFO     | [job] validate thread has finished
[2026-01-09 21:14:24] 2026-01-10 02:13:52,615 | INFO     | [job] control thread has finished
[2026-01-09 21:14:24] 2026-01-10 02:13:52,622 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 21:14:24] 2026-01-10 02:13:52,759 | INFO     | [payload] control thread has finished
[2026-01-09 21:14:24] 2026-01-10 02:13:52,914 | INFO     | [data] copytool_out thread has finished
[2026-01-09 21:14:24] 2026-01-10 02:13:52,963 | INFO     | [job] queue monitor thread has finished
[2026-01-09 21:14:24] 2026-01-10 02:13:54,430 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 21:14:24] 2026-01-10 02:14:01,148 | INFO     | job.realtimelogging is not enabled
[2026-01-09 21:14:24] 2026-01-10 02:14:02,154 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 21:14:24] 2026-01-10 02:14:08,478 | INFO     | [monitor] cgroup control has ended
[2026-01-09 21:14:24] 2026-01-10 02:14:09,008 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140363493164864)>', '<ExcThread(monitor, started 140362928604928)>']
[2026-01-09 21:14:24] 2026-01-10 02:14:14,035 | INFO     | all workflow threads have been joined
[2026-01-09 21:14:24] 2026-01-10 02:14:14,036 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 21:14:24] 2026-01-10 02:14:14,036 | INFO     | traces error code: 0
[2026-01-09 21:14:24] 2026-01-10 02:14:14,036 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 21:14:24] 2026-01-10 02:14:22,168 | INFO     | PID=993588 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 21:14:24] 2026-01-10 02:14:22,169 | INFO     | .. there are 23 such processes running
[2026-01-09 21:14:24] 2026-01-10 02:14:22,169 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 21:14:24] 2026-01-10 02:14:22,169 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 21:14:24] 2026-01-10 02:14:22,169 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 21:14:24] 2026-01-10 02:14:22,169 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 21:14:24] 2026-01-10 02:14:22,169 | INFO     | [monitor] control thread has ended
[2026-01-09 21:14:24] 2026-01-10 02:14:23,018 [wrapper] ==== pilot stdout END ====
[2026-01-09 21:14:24] 2026-01-10 02:14:23,041 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 21:14:24] 2026-01-10 02:14:23,064 [wrapper] pilotpid: 993588
[2026-01-09 21:14:24] 2026-01-10 02:14:23,087 [wrapper] Pilot exit status: 0
[2026-01-09 21:14:24] 2026-01-10 02:14:23,169 [wrapper] pandaids: 6963156477 6963156477
[2026-01-09 21:14:24] 2026-01-10 02:14:23,368 [wrapper] cleanup supervisor_pilot 2120890 993589
[2026-01-09 21:14:24] 2026-01-10 02:14:23,398 [wrapper] Test setup, not cleaning
[2026-01-09 21:14:24] 2026-01-10 02:14:23,406 [wrapper] apfmon messages muted
[2026-01-09 21:14:24] 2026-01-10 02:14:23,416 [wrapper] ==== wrapper stdout END ====
[2026-01-09 21:14:24] 2026-01-10 02:14:23,460 [wrapper] ==== wrapper stderr END ====
[2026-01-09 21:14:24]  *** Error codes and diagnostics ***
[2026-01-09 21:14:24]     "exeErrorCode": 0,
[2026-01-09 21:14:24]     "exeErrorDiag": "",
[2026-01-09 21:14:24]     "pilotErrorCode": 0,
[2026-01-09 21:14:24]     "pilotErrorDiag": "",
[2026-01-09 21:14:24]  *** Listing of results directory ***
[2026-01-09 21:14:24] total 658316
[2026-01-09 21:14:24] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 21:14:24] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 14:06 pilot3.tar.gz
[2026-01-09 21:14:24] -rwx------. 1 boincer umatlas     36322 Jan  8 14:10 runpilot2-wrapper.sh
[2026-01-09 21:14:24] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 14:11 queuedata.json
[2026-01-09 21:14:24] -rw-r--r--. 1 boincer umatlas       100 Jan  9 13:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 21:14:24] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 13:49 run_atlas
[2026-01-09 21:14:24] -rw-r--r--. 1 boincer umatlas       105 Jan  9 13:49 job.xml
[2026-01-09 21:14:24] -rw-r--r--. 3 boincer umatlas 225222444 Jan  9 13:49 EVNT.47898824._000905.pool.root.1
[2026-01-09 21:14:24] -rw-r--r--. 3 boincer umatlas 225222444 Jan  9 13:49 ATLAS.root_0
[2026-01-09 21:14:24] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 13:49 start_atlas.sh
[2026-01-09 21:14:24] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 13:49 shared
[2026-01-09 21:14:24] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 13:49 input.tar.gz
[2026-01-09 21:14:24] -rw-r--r--. 1 boincer umatlas         0 Jan  9 13:49 boinc_lockfile
[2026-01-09 21:14:24] -rw-r--r--. 1 boincer umatlas      2518 Jan  9 17:49 pandaJob.out
[2026-01-09 21:14:24] -rw-------. 1 boincer umatlas        57 Jan  9 17:49 setup.sh.local
[2026-01-09 21:14:24] -rw-------. 1 boincer umatlas    989375 Jan  9 17:49 agis_schedconf.cvmfs.json
[2026-01-09 21:14:24] -rw-r--r--. 1 boincer umatlas       530 Jan  9 21:12 boinc_task_state.xml
[2026-01-09 21:14:24] -rw-------. 1 boincer umatlas 215571341 Jan  9 21:12 HITS.47898826._031647.pool.root.1
[2026-01-09 21:14:24] -rw-------. 1 boincer umatlas      1045 Jan  9 21:13 memory_monitor_summary.json
[2026-01-09 21:14:24] -rw-r--r--. 1 boincer umatlas      6957 Jan  9 21:13 init_data.xml
[2026-01-09 21:14:24] -rw-------. 1 boincer umatlas   1516240 Jan  9 21:13 agis_ddmendpoints.agis.ALL.json
[2026-01-09 21:14:24] -rw-------. 1 boincer umatlas    446785 Jan  9 21:13 log.47898826._031647.job.log.tgz.1
[2026-01-09 21:14:24] -rw-------. 1 boincer umatlas        96 Jan  9 21:13 pilot_heartbeat.json
[2026-01-09 21:14:24] -rw-------. 1 boincer umatlas      7803 Jan  9 21:13 heartbeat.json
[2026-01-09 21:14:24] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 21:14 boinc_mmap_file
[2026-01-09 21:14:24] -rw-------. 1 boincer umatlas       822 Jan  9 21:14 pilotlog.txt
[2026-01-09 21:14:24] -rw-r--r--. 1 boincer umatlas        28 Jan  9 21:14 wrapper_checkpoint.txt
[2026-01-09 21:14:24] -rw-------. 1 boincer umatlas   1645791 Jan  9 21:14 log.47898826._031647.job.log.1
[2026-01-09 21:14:24] -rw-------. 1 boincer umatlas       357 Jan  9 21:14 output.list
[2026-01-09 21:14:24] -rw-r--r--. 1 boincer umatlas       620 Jan  9 21:14 runtime_log
[2026-01-09 21:14:24] -rw-------. 1 boincer umatlas   2109440 Jan  9 21:14 result.tar.gz
[2026-01-09 21:14:24] -rw-r--r--. 1 boincer umatlas      9428 Jan  9 21:14 runtime_log.err
[2026-01-09 21:14:24] -rw-------. 1 boincer umatlas       785 Jan  9 21:14 gFHODmvZAy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmONlKDm3OwOEm.diag
[2026-01-09 21:14:24] -rw-r--r--. 1 boincer umatlas     23449 Jan  9 21:14 stderr.txt
[2026-01-09 21:14:24] HITS file was successfully produced:
[2026-01-09 21:14:24] -rw-------. 1 boincer umatlas 215571341 Jan  9 21:12 shared/HITS.pool.root.1
[2026-01-09 21:14:24]  *** Contents of shared directory: ***
[2026-01-09 21:14:24] total 433128
[2026-01-09 21:14:24] -rw-r--r--. 3 boincer umatlas 225222444 Jan  9 13:49 ATLAS.root_0
[2026-01-09 21:14:24] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 13:49 start_atlas.sh
[2026-01-09 21:14:24] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 13:49 input.tar.gz
[2026-01-09 21:14:24] -rw-------. 1 boincer umatlas 215571341 Jan  9 21:12 HITS.pool.root.1
[2026-01-09 21:14:24] -rw-------. 1 boincer umatlas   2109440 Jan  9 21:14 result.tar.gz
21:14:26 (971520): run_atlas exited; CPU time 45204.128053
21:14:26 (971520): called boinc_finish(0)

</stderr_txt>
]]>

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