Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:51:40 (3538676): wrapper (7.7.26015): starting
03:51:40 (3538676): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 03:51:40] Arguments: --nthreads 3
[2026-01-10 03:51:40] Threads: 3
[2026-01-10 03:51:40] Checking for CVMFS
[2026-01-10 03:51:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 03:51:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 03:51:41] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 03:51:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 03:51:41] 2.9.2.0 2791136 3017 80668 154964 1 57 21539210 36864001 0 130560 0 1932002 99.988 112827 5882 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 03:51:41] CVMFS is ok
[2026-01-10 03:51:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 03:51:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 03:51:41] Further information can be found at the LHC@home message board.
[2026-01-10 03:51:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 03:51:41] Checking for apptainer binary...
[2026-01-10 03:51:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 03:51:41] Running /usr/bin/apptainer --version
[2026-01-10 03:51:41] apptainer version 1.4.1-1.1
[2026-01-10 03:51:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 03:51:41] thA337a
[2026-01-10 03:51:41] apptainer works
[2026-01-10 03:51:41] Set ATHENA_PROC_NUMBER=3
[2026-01-10 03:51:41] Set ATHENA_CORE_NUMBER=3
[2026-01-10 03:51:41] Starting ATLAS job with PandaID=6963153166
[2026-01-10 03:51:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 05:42:22]  *** The last 200 lines of the pilot log: ***
[2026-01-10 05:42:22] 2026-01-10 04:41:50,717 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 05:42:22] 2026-01-10 04:41:50,717 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 05:42:22] 2026-01-10 04:41:50,717 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 05:42:22] 2026-01-10 04:41:50,717 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 05:42:22] 2026-01-10 04:41:50,718 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 05:42:22] 2026-01-10 04:41:50,718 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 05:42:22] 2026-01-10 04:41:50,718 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 05:42:22] 2026-01-10 04:41:50,718 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 05:42:22] 2026-01-10 04:41:50,718 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 05:42:22] 2026-01-10 04:41:50,718 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 05:42:22] 2026-01-10 04:41:50,718 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 05:42:22] 2026-01-10 04:41:50,718 | INFO     | job 6963153166 has completed (purged errors)
[2026-01-10 05:42:22] 2026-01-10 04:41:50,718 | INFO     | overall cleanup function is called
[2026-01-10 05:42:22] 2026-01-10 04:41:51,724 | INFO     | --- collectZombieJob: --- 10, [3548869]
[2026-01-10 05:42:22] 2026-01-10 04:41:51,725 | INFO     | zombie collector waiting for pid 3548869
[2026-01-10 05:42:22] 2026-01-10 04:41:51,725 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 05:42:22] 2026-01-10 04:41:51,725 | INFO     | collected zombie processes
[2026-01-10 05:42:22] 2026-01-10 04:41:51,725 | INFO     | will attempt to kill all subprocesses of pid=3548869
[2026-01-10 05:42:22] 2026-01-10 04:41:51,769 | INFO     | process IDs to be killed: [3548869] (in reverse order)
[2026-01-10 05:42:22] 2026-01-10 04:41:51,793 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 05:42:22] 2026-01-10 04:41:51,793 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 05:42:22] 2026-01-10 04:41:51,794 | INFO     | did not find any defunct processes belonging to 3548869
[2026-01-10 05:42:22] 2026-01-10 04:41:51,795 | INFO     | did not find any defunct processes belonging to 3548869
[2026-01-10 05:42:22] 2026-01-10 04:41:51,795 | INFO     | ready for new job
[2026-01-10 05:42:22] 2026-01-10 04:41:51,796 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 05:42:22] 2026-01-10 04:41:51,796 | INFO     | ***************************************
[2026-01-10 05:42:22] 2026-01-10 04:41:51,796 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 05:42:22] 2026-01-10 04:41:51,796 | INFO     | ***************************************
[2026-01-10 05:42:22] 2026-01-10 04:41:51,796 | INFO     | 
[2026-01-10 05:42:22] 2026-01-10 04:41:51,797 | INFO     | architecture information:
[2026-01-10 05:42:22] 2026-01-10 04:41:51,797 | INFO     | executing command: cat /etc/os-release
[2026-01-10 05:42:22] 2026-01-10 04:41:51,805 | INFO     | cat /etc/os-release:
[2026-01-10 05:42:22] NAME="CentOS Linux"
[2026-01-10 05:42:22] VERSION="7 (Core)"
[2026-01-10 05:42:22] ID="centos"
[2026-01-10 05:42:22] ID_LIKE="rhel fedora"
[2026-01-10 05:42:22] VERSION_ID="7"
[2026-01-10 05:42:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 05:42:22] ANSI_COLOR="0;31"
[2026-01-10 05:42:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 05:42:22] HOME_URL="https://www.centos.org/"
[2026-01-10 05:42:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 05:42:22] 
[2026-01-10 05:42:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 05:42:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 05:42:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 05:42:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 05:42:22] 
[2026-01-10 05:42:22] 2026-01-10 04:41:51,805 | INFO     | ***************************************
[2026-01-10 05:42:22] 2026-01-10 04:41:52,308 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 05:42:22] 2026-01-10 04:41:52,321 | INFO     | sufficient remaining disk space (384121700352 B)
[2026-01-10 05:42:22] 2026-01-10 04:41:52,321 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 05:42:22] 2026-01-10 04:41:52,321 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 05:42:22] 2026-01-10 04:41:52,321 | INFO     | update_server=False
[2026-01-10 05:42:22] 2026-01-10 04:41:52,321 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 05:42:22] 2026-01-10 04:41:52,321 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 05:42:22] 2026-01-10 04:41:52,321 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 05:42:22] 2026-01-10 04:41:52,436 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 05:42:22] 2026-01-10 04:41:52,436 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 05:42:22] 2026-01-10 04:41:52,436 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 05:42:22] 2026-01-10 04:41:52,436 | INFO     | will abort loop
[2026-01-10 05:42:22] 2026-01-10 04:41:52,612 | INFO     | all data control threads have been joined
[2026-01-10 05:42:22] 2026-01-10 04:41:53,049 | INFO     | all payload control threads have been joined
[2026-01-10 05:42:22] 2026-01-10 04:41:53,062 | INFO     | all job control threads have been joined
[2026-01-10 05:42:22] 2026-01-10 04:41:53,243 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 05:42:22] 2026-01-10 04:41:53,327 | INFO     | [job] retrieve thread has finished
[2026-01-10 05:42:22] 2026-01-10 04:41:53,327 | INFO     | [job] queue monitor thread has finished
[2026-01-10 05:42:22] 2026-01-10 04:41:53,339 | INFO     | [job] validate thread has finished
[2026-01-10 05:42:22] 2026-01-10 04:41:53,419 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 05:42:22] 2026-01-10 04:41:53,438 | INFO     | [job] job monitor thread has finished
[2026-01-10 05:42:22] 2026-01-10 04:41:53,450 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 05:42:22] 2026-01-10 04:41:53,618 | INFO     | [data] control thread has finished
[2026-01-10 05:42:22] 2026-01-10 04:41:53,778 | INFO     | [payload] failed_post thread has finished
[2026-01-10 05:42:22] 2026-01-10 04:41:53,792 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 05:42:22] 2026-01-10 04:41:54,055 | INFO     | [payload] control thread has finished
[2026-01-10 05:42:22] 2026-01-10 04:41:54,067 | INFO     | [job] control thread has finished
[2026-01-10 05:42:22] 2026-01-10 04:41:54,191 | INFO     | [data] copytool_in thread has finished
[2026-01-10 05:42:22] 2026-01-10 04:41:54,520 | INFO     | [payload] validate_post thread has finished
[2026-01-10 05:42:22] 2026-01-10 04:41:55,250 | INFO     | [data] copytool_out thread has finished
[2026-01-10 05:42:22] 2026-01-10 04:41:55,291 | INFO     | [monitor] cgroup control has ended
[2026-01-10 05:42:22] 2026-01-10 04:41:56,328 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 05:42:22] 2026-01-10 04:42:02,395 | INFO     | job.realtimelogging is not enabled
[2026-01-10 05:42:22] 2026-01-10 04:42:03,400 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 05:42:22] 2026-01-10 04:42:05,212 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139660792112960)>', '<ExcThread(monitor, started 139660307191552)>']
[2026-01-10 05:42:22] 2026-01-10 04:42:10,213 | INFO     | all workflow threads have been joined
[2026-01-10 05:42:22] 2026-01-10 04:42:10,213 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 05:42:22] 2026-01-10 04:42:10,213 | INFO     | traces error code: 0
[2026-01-10 05:42:22] 2026-01-10 04:42:10,213 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 05:42:22] 2026-01-10 04:42:22,809 | INFO     | PID=3542399 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 05:42:22] 2026-01-10 04:42:22,809 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 05:42:22] 2026-01-10 04:42:22,809 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 05:42:22] 2026-01-10 04:42:22,810 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 05:42:22] 2026-01-10 04:42:22,810 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 05:42:22] 2026-01-10 04:42:22,810 | INFO     | [monitor] control thread has ended
[2026-01-10 05:42:22] 2026-01-10 04:42:22,856 [wrapper] ==== pilot stdout END ====
[2026-01-10 05:42:22] 2026-01-10 04:42:22,858 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 05:42:22] 2026-01-10 04:42:22,860 [wrapper] pilotpid: 3542399
[2026-01-10 05:42:22] 2026-01-10 04:42:22,863 [wrapper] Pilot exit status: 0
[2026-01-10 05:42:22] 2026-01-10 04:42:22,870 [wrapper] pandaids: 6963153166
[2026-01-10 05:42:22] 2026-01-10 04:42:22,886 [wrapper] cleanup supervisor_pilot 3563894 3542400
[2026-01-10 05:42:22] 2026-01-10 04:42:22,888 [wrapper] Test setup, not cleaning
[2026-01-10 05:42:22] 2026-01-10 04:42:22,890 [wrapper] apfmon messages muted
[2026-01-10 05:42:22] 2026-01-10 04:42:22,892 [wrapper] ==== wrapper stdout END ====
[2026-01-10 05:42:22] 2026-01-10 04:42:22,895 [wrapper] ==== wrapper stderr END ====
[2026-01-10 05:42:22]  *** Error codes and diagnostics ***
[2026-01-10 05:42:22]     "exeErrorCode": 0,
[2026-01-10 05:42:22]     "exeErrorDiag": "",
[2026-01-10 05:42:22]     "pilotErrorCode": 0,
[2026-01-10 05:42:22]     "pilotErrorDiag": "",
[2026-01-10 05:42:22]  *** Listing of results directory ***
[2026-01-10 05:42:22] total 441496
[2026-01-10 05:42:22] -rw-r--r-- 1 boinc boinc    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-10 05:42:22] -rwx------ 1 boinc boinc     36322 Jan  8 20:09 runpilot2-wrapper.sh
[2026-01-10 05:42:22] -rw-r--r-- 1 boinc boinc      5112 Jan  8 20:11 queuedata.json
[2026-01-10 05:42:22] -rw-r--r-- 1 boinc boinc       100 Jan 10 03:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 05:42:22] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 03:51 run_atlas
[2026-01-10 05:42:22] -rw-r--r-- 1 boinc boinc       105 Jan 10 03:51 job.xml
[2026-01-10 05:42:22] -rw-r--r-- 2 boinc boinc 227357252 Jan 10 03:51 EVNT.47898824._001155.pool.root.1
[2026-01-10 05:42:22] -rw-r--r-- 2 boinc boinc    592390 Jan 10 03:51 input.tar.gz
[2026-01-10 05:42:22] -rw-r--r-- 2 boinc boinc     15847 Jan 10 03:51 start_atlas.sh
[2026-01-10 05:42:22] drwxrwx--x 2 boinc boinc      4096 Jan 10 03:51 shared
[2026-01-10 05:42:22] -rw-r--r-- 1 boinc boinc         0 Jan 10 03:51 boinc_setup_complete
[2026-01-10 05:42:22] -rw-r--r-- 1 boinc boinc      6446 Jan 10 03:51 init_data.xml
[2026-01-10 05:42:22] -rw-r--r-- 1 boinc boinc         0 Jan 10 03:51 boinc_lockfile
[2026-01-10 05:42:22] -rw-r--r-- 1 boinc boinc      2520 Jan 10 03:51 pandaJob.out
[2026-01-10 05:42:22] -rw------- 1 boinc boinc    989382 Jan 10 03:51 agis_schedconf.cvmfs.json
[2026-01-10 05:42:22] -rw------- 1 boinc boinc   1516240 Jan 10 03:51 agis_ddmendpoints.agis.ALL.json
[2026-01-10 05:42:22] drwx------ 5 boinc boinc      4096 Jan 10 03:51 pilot3
[2026-01-10 05:42:22] -rw------- 1 boinc boinc 218353980 Jan 10 05:41 HITS.47898826._029861.pool.root.1
[2026-01-10 05:42:22] -rw-r--r-- 1 boinc boinc       529 Jan 10 05:41 boinc_task_state.xml
[2026-01-10 05:42:22] -rw------- 1 boinc boinc      1024 Jan 10 05:41 memory_monitor_summary.json
[2026-01-10 05:42:22] -rw------- 1 boinc boinc    280377 Jan 10 05:41 log.47898826._029861.job.log.tgz.1
[2026-01-10 05:42:22] -rw------- 1 boinc boinc      7743 Jan 10 05:41 heartbeat.json
[2026-01-10 05:42:22] -rw-r--r-- 1 boinc boinc        27 Jan 10 05:42 wrapper_checkpoint.txt
[2026-01-10 05:42:22] -rw-r--r-- 1 boinc boinc      8192 Jan 10 05:42 boinc_mmap_file
[2026-01-10 05:42:22] -rw------- 1 boinc boinc       747 Jan 10 05:42 pilotlog.txt
[2026-01-10 05:42:22] -rw------- 1 boinc boinc        95 Jan 10 05:42 pilot_heartbeat.json
[2026-01-10 05:42:22] -rw------- 1 boinc boinc    957253 Jan 10 05:42 log.47898826._029861.job.log.1
[2026-01-10 05:42:22] -rw------- 1 boinc boinc       357 Jan 10 05:42 output.list
[2026-01-10 05:42:22] -rw-r--r-- 1 boinc boinc       620 Jan 10 05:42 runtime_log
[2026-01-10 05:42:22] -rw------- 1 boinc boinc   1259520 Jan 10 05:42 result.tar.gz
[2026-01-10 05:42:22] -rw------- 1 boinc boinc       660 Jan 10 05:42 zxhLDm0YAy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDma2fKDmy9tFdm.diag
[2026-01-10 05:42:22] -rw-r--r-- 1 boinc boinc      8902 Jan 10 05:42 runtime_log.err
[2026-01-10 05:42:22] -rw-r--r-- 1 boinc boinc     12259 Jan 10 05:42 stderr.txt
[2026-01-10 05:42:22] HITS file was successfully produced:
[2026-01-10 05:42:22] -rw------- 1 boinc boinc 218353980 Jan 10 05:41 shared/HITS.pool.root.1
[2026-01-10 05:42:22]  *** Contents of shared directory: ***
[2026-01-10 05:42:22] total 437108
[2026-01-10 05:42:22] -rw-r--r-- 2 boinc boinc 227357252 Jan 10 03:51 ATLAS.root_0
[2026-01-10 05:42:22] -rw-r--r-- 2 boinc boinc    592390 Jan 10 03:51 input.tar.gz
[2026-01-10 05:42:22] -rw-r--r-- 2 boinc boinc     15847 Jan 10 03:51 start_atlas.sh
[2026-01-10 05:42:22] -rw------- 1 boinc boinc 218353980 Jan 10 05:41 HITS.pool.root.1
[2026-01-10 05:42:22] -rw------- 1 boinc boinc   1259520 Jan 10 05:42 result.tar.gz
05:42:24 (3538676): run_atlas exited; CPU time 19109.318017
05:42:24 (3538676): called boinc_finish(0)

</stderr_txt>
]]>

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