Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:33:27 (3251350): wrapper (7.7.26015): starting
15:33:27 (3251350): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 15:33:27] Arguments: --nthreads 9
[2026-01-09 15:33:27] Threads: 9
[2026-01-09 15:33:27] Checking for CVMFS
[2026-01-09 15:33:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 15:33:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 15:33:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 15:33:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 15:33:28] 2.13.3.0 313591 17391 77728 154956 2 97 26669279 37030913 1932 16776704 0 5442648 99.988 546897 56732 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 15:33:28] CVMFS is ok
[2026-01-09 15:33:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 15:33:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 15:33:28] Further information can be found at the LHC@home message board.
[2026-01-09 15:33:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 15:33:28] Checking for apptainer binary...
[2026-01-09 15:33:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 15:33:28] Running /usr/bin/apptainer --version
[2026-01-09 15:33:28] apptainer version 1.4.5-2.el9
[2026-01-09 15:33:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 15:33:28] c-205-37.aglt2.org
[2026-01-09 15:33:28] apptainer works
[2026-01-09 15:33:28] Set ATHENA_PROC_NUMBER=9
[2026-01-09 15:33:28] Set ATHENA_CORE_NUMBER=9
[2026-01-09 15:33:28] Starting ATLAS job with PandaID=6963188121
[2026-01-09 15:33:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 17:42:56]  *** The last 200 lines of the pilot log: ***
[2026-01-09 17:42:56] 2026-01-09 22:41:52,271 | INFO     | total number of processed events: 400 (read)
[2026-01-09 17:42:56] 2026-01-09 22:41:52,272 | INFO     | executing command: lscpu
[2026-01-09 17:42:56] 2026-01-09 22:41:52,306 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 17:42:56] 2026-01-09 22:41:53,882 | INFO     | time since job start (7695s) is within the limit (349056.0s)
[2026-01-09 17:42:56] 2026-01-09 22:41:54,327 | INFO     | monitor loop #577: job 0:6963188121 is in state 'finished'
[2026-01-09 17:42:56] 2026-01-09 22:41:54,328 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 17:42:56] 2026-01-09 22:41:55,131 | INFO     | PID=3255037 has CPU usage=9.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 17:42:56] 2026-01-09 22:41:55,131 | INFO     | .. there are 3 such processes running
[2026-01-09 17:42:56] 2026-01-09 22:41:55,692 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 17:42:56] 2026-01-09 22:41:55,698 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2750.0508437500002
[2026-01-09 17:42:56] 2026-01-09 22:41:55,705 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963188121/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 17:42:56] 2026-01-09 22:41:55,706 | INFO     | extracted standard info from prmon json
[2026-01-09 17:42:56] 2026-01-09 22:41:55,706 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 17:42:56] 2026-01-09 22:41:55,706 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 17:42:56] 2026-01-09 22:41:55,707 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 17:42:56] 2026-01-09 22:41:55,707 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 17:42:56] 2026-01-09 22:41:55,710 | INFO     | fitting pss+swap vs Time
[2026-01-09 17:42:56] 2026-01-09 22:41:55,710 | INFO     | sum of square deviations: 620244187.5
[2026-01-09 17:42:56] 2026-01-09 22:41:55,711 | INFO     | sum of deviations: -16071412122.5
[2026-01-09 17:42:56] 2026-01-09 22:41:55,711 | INFO     | mean x: 1767994654.5
[2026-01-09 17:42:56] 2026-01-09 22:41:55,712 | INFO     | mean y: 2659646.785714286
[2026-01-09 17:42:56] 2026-01-09 22:41:55,712 | INFO     | intersect: 45813924460.688545
[2026-01-09 17:42:56] 2026-01-09 22:41:55,712 | INFO     | chi2: 1.6309495862927221
[2026-01-09 17:42:56] 2026-01-09 22:41:55,713 | INFO     | sum of square deviations: 549294020.0
[2026-01-09 17:42:56] 2026-01-09 22:41:55,713 | INFO     | sum of deviations: -14623304788.0
[2026-01-09 17:42:56] 2026-01-09 22:41:55,713 | INFO     | mean x: 1767994502.0
[2026-01-09 17:42:56] 2026-01-09 22:41:55,714 | INFO     | mean y: 2662760.9008264462
[2026-01-09 17:42:56] 2026-01-09 22:41:55,714 | INFO     | intersect: 47070210421.90444
[2026-01-09 17:42:56] 2026-01-09 22:41:55,714 | INFO     | chi2: 1.628741207529334
[2026-01-09 17:42:56] 2026-01-09 22:41:55,714 | INFO     | current chi2=1.628741207529334 (change=0.13540447736389064 %)
[2026-01-09 17:42:56] 2026-01-09 22:41:55,714 | INFO     | right removable region: 120
[2026-01-09 17:42:56] 2026-01-09 22:41:55,715 | INFO     | sum of square deviations: 549294020.0
[2026-01-09 17:42:56] 2026-01-09 22:41:55,715 | INFO     | sum of deviations: -33992067731.999992
[2026-01-09 17:42:56] 2026-01-09 22:41:55,715 | INFO     | mean x: 1767994807.0
[2026-01-09 17:42:56] 2026-01-09 22:41:55,716 | INFO     | mean y: 2697393.8099173554
[2026-01-09 17:42:56] 2026-01-09 22:41:55,716 | INFO     | intersect: 109411860867.62355
[2026-01-09 17:42:56] 2026-01-09 22:41:55,716 | INFO     | chi2: 0.24297608553177683
[2026-01-09 17:42:56] 2026-01-09 22:41:55,716 | INFO     | current chi2=0.24297608553177683 (change=85.1021706879315 %)
[2026-01-09 17:42:56] 2026-01-09 22:41:55,716 | INFO     | sum of square deviations: 483971865.0
[2026-01-09 17:42:56] 2026-01-09 22:41:55,717 | INFO     | sum of deviations: -32614416495.500008
[2026-01-09 17:42:56] 2026-01-09 22:41:55,717 | INFO     | mean x: 1767994959.5
[2026-01-09 17:42:56] 2026-01-09 22:41:55,718 | INFO     | mean y: 2694033.2327586208
[2026-01-09 17:42:56] 2026-01-09 22:41:55,718 | INFO     | intersect: 119146239642.186
[2026-01-09 17:42:56] 2026-01-09 22:41:55,718 | INFO     | chi2: 0.2158983319595511
[2026-01-09 17:42:56] 2026-01-09 22:41:55,718 | INFO     | current chi2=0.2158983319595511 (change=11.144205205612487 %)
[2026-01-09 17:42:56] 2026-01-09 22:41:55,718 | INFO     | left removable region: 20
[2026-01-09 17:42:56] 2026-01-09 22:41:55,719 | INFO     | sum of square deviations: 310052325.0
[2026-01-09 17:42:56] 2026-01-09 22:41:55,719 | INFO     | sum of deviations: -20627395738.500004
[2026-01-09 17:42:56] 2026-01-09 22:41:55,719 | INFO     | mean x: 1767995081.5
[2026-01-09 17:42:56] 2026-01-09 22:41:55,720 | INFO     | mean y: 2671163.23
[2026-01-09 17:42:56] 2026-01-09 22:41:55,720 | INFO     | intersect: 117625186039.7821
[2026-01-09 17:42:56] 2026-01-09 22:41:55,720 | INFO     | chi2: 0.1938720442934998
[2026-01-09 17:42:56] 2026-01-09 22:41:55,720 | INFO     | current memory leak: -66.53 B/s (using 100 data points, chi2=0.19)
[2026-01-09 17:42:56] 2026-01-09 22:41:55,721 | INFO     | could have reported an average CPU frequency of 2642 MHz (8 samples)
[2026-01-09 17:42:56] 2026-01-09 22:41:55,721 | INFO     | ..............................
[2026-01-09 17:42:56] 2026-01-09 22:41:55,721 | INFO     | . Timing measurements:
[2026-01-09 17:42:56] 2026-01-09 22:41:55,721 | INFO     | . get job = 0 s
[2026-01-09 17:42:56] 2026-01-09 22:41:55,721 | INFO     | . initial setup = 2 s
[2026-01-09 17:42:56] 2026-01-09 22:41:55,721 | INFO     | . payload setup = 5 s
[2026-01-09 17:42:56] 2026-01-09 22:41:55,721 | INFO     | . stage-in = 0 s
[2026-01-09 17:42:56] 2026-01-09 22:41:55,722 | INFO     | . payload execution = 7667 s
[2026-01-09 17:42:56] 2026-01-09 22:41:55,722 | INFO     | . stage-out = 0 s
[2026-01-09 17:42:56] 2026-01-09 22:41:55,722 | INFO     | . log creation = 0 s
[2026-01-09 17:42:56] 2026-01-09 22:41:55,722 | INFO     | ..............................
[2026-01-09 17:42:56] 2026-01-09 22:41:56,131 | INFO     | time since job start (7698s) is within the limit (349056.0s)
[2026-01-09 17:42:56] 2026-01-09 22:41:56,242 | INFO     | 
[2026-01-09 17:42:56] 2026-01-09 22:41:56,242 | INFO     | job summary report
[2026-01-09 17:42:56] 2026-01-09 22:41:56,242 | INFO     | --------------------------------------------------
[2026-01-09 17:42:56] 2026-01-09 22:41:56,242 | INFO     | PanDA job id: 6963188121
[2026-01-09 17:42:56] 2026-01-09 22:41:56,242 | INFO     | task id: 47898826
[2026-01-09 17:42:56] 2026-01-09 22:41:56,242 | INFO     | errors: (none)
[2026-01-09 17:42:56] 2026-01-09 22:41:56,243 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 17:42:56] 2026-01-09 22:41:56,243 | INFO     | pilot state: finished 
[2026-01-09 17:42:56] 2026-01-09 22:41:56,243 | INFO     | transexitcode: 0
[2026-01-09 17:42:56] 2026-01-09 22:41:56,243 | INFO     | exeerrorcode: 0
[2026-01-09 17:42:56] 2026-01-09 22:41:56,243 | INFO     | exeerrordiag: 
[2026-01-09 17:42:56] 2026-01-09 22:41:56,243 | INFO     | exitcode: 0
[2026-01-09 17:42:56] 2026-01-09 22:41:56,243 | INFO     | exitmsg: OK
[2026-01-09 17:42:56] 2026-01-09 22:41:56,243 | INFO     | cpuconsumptiontime: 63941 s
[2026-01-09 17:42:56] 2026-01-09 22:41:56,244 | INFO     | nevents: 400
[2026-01-09 17:42:56] 2026-01-09 22:41:56,244 | INFO     | neventsw: 0
[2026-01-09 17:42:56] 2026-01-09 22:41:56,244 | INFO     | pid: 3261410
[2026-01-09 17:42:56] 2026-01-09 22:41:56,244 | INFO     | pgrp: 3261410
[2026-01-09 17:42:56] 2026-01-09 22:41:56,244 | INFO     | corecount: 9
[2026-01-09 17:42:56] 2026-01-09 22:41:56,244 | INFO     | event service: False
[2026-01-09 17:42:56] 2026-01-09 22:41:56,244 | INFO     | sizes: {0: 2283965, 4: 2284227, 11: 2284255, 7677: 2311983, 7678: 2320981, 7679: 2321037, 7683: 2321359}
[2026-01-09 17:42:56] 2026-01-09 22:41:56,244 | INFO     | --------------------------------------------------
[2026-01-09 17:42:56] 2026-01-09 22:41:56,244 | INFO     | 
[2026-01-09 17:42:56] 2026-01-09 22:41:56,245 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 17:42:56] 2026-01-09 22:41:56,262 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 17:42:56] 2026-01-09 22:41:56,262 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 17:42:56] 2026-01-09 22:41:56,262 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 17:42:56] 2026-01-09 22:41:56,262 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 17:42:56] 2026-01-09 22:41:56,263 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 17:42:56] 2026-01-09 22:41:56,263 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 17:42:56] 2026-01-09 22:41:56,263 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 17:42:56] 2026-01-09 22:41:56,263 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 17:42:56] 2026-01-09 22:41:56,263 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 17:42:56] 2026-01-09 22:41:56,263 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 17:42:56] 2026-01-09 22:41:56,263 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 17:42:56] 2026-01-09 22:41:56,263 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 17:42:56] 2026-01-09 22:41:56,264 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 17:42:56] 2026-01-09 22:41:56,264 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 17:42:56] 2026-01-09 22:41:56,264 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 17:42:56] 2026-01-09 22:41:56,264 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 17:42:56] 2026-01-09 22:41:56,264 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 17:42:56] 2026-01-09 22:41:56,264 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 17:42:56] 2026-01-09 22:41:56,264 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 17:42:56] 2026-01-09 22:41:56,264 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 17:42:56] 2026-01-09 22:41:56,265 | INFO     | job 6963188121 has completed (purged errors)
[2026-01-09 17:42:56] 2026-01-09 22:41:56,265 | INFO     | overall cleanup function is called
[2026-01-09 17:42:56] 2026-01-09 22:41:57,273 | INFO     | --- collectZombieJob: --- 10, [3261410]
[2026-01-09 17:42:56] 2026-01-09 22:41:57,273 | INFO     | zombie collector waiting for pid 3261410
[2026-01-09 17:42:56] 2026-01-09 22:41:57,273 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 17:42:56] 2026-01-09 22:41:57,273 | INFO     | collected zombie processes
[2026-01-09 17:42:56] 2026-01-09 22:41:57,273 | INFO     | will attempt to kill all subprocesses of pid=3261410
[2026-01-09 17:42:56] 2026-01-09 22:41:57,473 | INFO     | process IDs to be killed: [3261410] (in reverse order)
[2026-01-09 17:42:56] 2026-01-09 22:41:57,528 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 17:42:56] 2026-01-09 22:41:57,529 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 17:42:56] 2026-01-09 22:41:57,534 | INFO     | did not find any defunct processes belonging to 3261410
[2026-01-09 17:42:56] 2026-01-09 22:41:57,539 | INFO     | did not find any defunct processes belonging to 3261410
[2026-01-09 17:42:56] 2026-01-09 22:41:57,539 | INFO     | ready for new job
[2026-01-09 17:42:56] 2026-01-09 22:41:57,539 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 17:42:56] 2026-01-09 22:41:57,541 | INFO     | ***************************************
[2026-01-09 17:42:56] 2026-01-09 22:41:57,541 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 17:42:56] 2026-01-09 22:41:57,542 | INFO     | ***************************************
[2026-01-09 17:42:56] 2026-01-09 22:41:57,542 | INFO     | 
[2026-01-09 17:42:56] 2026-01-09 22:41:57,544 | INFO     | architecture information:
[2026-01-09 17:42:56] 2026-01-09 22:41:57,544 | INFO     | executing command: cat /etc/os-release
[2026-01-09 17:42:56] 2026-01-09 22:41:57,557 | INFO     | cat /etc/os-release:
[2026-01-09 17:42:56] NAME="CentOS Linux"
[2026-01-09 17:42:56] VERSION="7 (Core)"
[2026-01-09 17:42:56] ID="centos"
[2026-01-09 17:42:56] ID_LIKE="rhel fedora"
[2026-01-09 17:42:56] VERSION_ID="7"
[2026-01-09 17:42:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 17:42:56] ANSI_COLOR="0;31"
[2026-01-09 17:42:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 17:42:56] HOME_URL="https://www.centos.org/"
[2026-01-09 17:42:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 17:42:56] 
[2026-01-09 17:42:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 17:42:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 17:42:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 17:42:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 17:42:56] 
[2026-01-09 17:42:56] 2026-01-09 22:41:57,557 | INFO     | ***************************************
[2026-01-09 17:42:56] 2026-01-09 22:41:58,060 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 17:42:56] 2026-01-09 22:41:58,074 | INFO     | sufficient remaining disk space (40540045312 B)
[2026-01-09 17:42:56] 2026-01-09 22:41:58,074 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 17:42:56] 2026-01-09 22:41:58,075 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 17:42:56] 2026-01-09 22:41:58,075 | INFO     | update_server=False
[2026-01-09 17:42:56] 2026-01-09 22:41:58,075 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 17:42:56] 2026-01-09 22:41:58,075 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-09 17:42:56] 2026-01-09 22:41:58,075 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 17:42:56] 2026-01-09 22:41:58,076 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 17:42:56] 2026-01-09 22:41:58,076 | INFO     | aborting loop
[2026-01-09 17:42:56] 2026-01-09 22:41:58,076 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 17:42:56] 2026-01-09 22:41:58,076 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 17:42:56] 2026-01-09 22:41:58,279 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 17:42:56] 2026-01-09 22:41:58,446 | INFO     | all job control threads have been joined
[2026-01-09 17:42:56] 2026-01-09 22:41:58,770 | INFO     | all payload control threads have been joined
[2026-01-09 17:42:56] 2026-01-09 22:41:59,080 | INFO     | [job] retrieve thread has finished
[2026-01-09 17:42:56] 2026-01-09 22:41:59,082 | INFO     | [job] job monitor thread has finished
[2026-01-09 17:42:56] 2026-01-09 22:41:59,107 | INFO     | all data control threads have been joined
[2026-01-09 17:42:56] 2026-01-09 22:41:59,181 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 17:42:56] 2026-01-09 22:41:59,450 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 17:42:56] 2026-01-09 22:41:59,452 | INFO     | [job] control thread has finished
[2026-01-09 17:42:56] 2026-01-09 22:41:59,514 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 17:42:56] 2026-01-09 22:41:59,776 | INFO     | [payload] control thread has finished
[2026-01-09 17:42:56] 2026-01-09 22:41:59,805 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 17:42:56] 2026-01-09 22:41:59,966 | INFO     | [data] copytool_in thread has finished
[2026-01-09 17:42:56] 2026-01-09 22:42:00,112 | INFO     | [data] control thread has finished
[2026-01-09 17:42:56] 2026-01-09 22:42:00,229 | INFO     | [job] validate thread has finished
[2026-01-09 17:42:56] 2026-01-09 22:42:00,493 | INFO     | [payload] validate_post thread has finished
[2026-01-09 17:42:56] 2026-01-09 22:42:00,661 | INFO     | [payload] failed_post thread has finished
[2026-01-09 17:42:56] 2026-01-09 22:42:00,848 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 17:42:56] 2026-01-09 22:42:01,455 | INFO     | [data] copytool_out thread has finished
[2026-01-09 17:42:56] 2026-01-09 22:42:01,854 | INFO     | [job] queue monitor thread has finished
[2026-01-09 17:42:56] 2026-01-09 22:42:02,285 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 17:42:56] 2026-01-09 22:42:08,548 | INFO     | job.realtimelogging is not enabled
[2026-01-09 17:42:56] 2026-01-09 22:42:09,553 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 17:42:56] 2026-01-09 22:42:49,922 | INFO     | [monitor] cgroup control has ended
[2026-01-09 17:42:56] 2026-01-09 22:42:51,171 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139717953566528)>', '<ExcThread(monitor, started 139717450372864)>']
[2026-01-09 17:42:56] 2026-01-09 22:42:51,325 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 17:42:56] 2026-01-09 22:42:51,325 | INFO     | [monitor] control thread has ended
[2026-01-09 17:42:56] 2026-01-09 22:42:56,180 | INFO     | all workflow threads have been joined
[2026-01-09 17:42:56] 2026-01-09 22:42:56,180 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 17:42:56] 2026-01-09 22:42:56,180 | INFO     | traces error code: 0
[2026-01-09 17:42:56] 2026-01-09 22:42:56,181 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 17:42:56] 2026-01-09 22:42:56,291 [wrapper] ==== pilot stdout END ====
[2026-01-09 17:42:56] 2026-01-09 22:42:56,293 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 17:42:56] 2026-01-09 22:42:56,296 [wrapper] pilotpid: 3255037
[2026-01-09 17:42:56] 2026-01-09 22:42:56,298 [wrapper] Pilot exit status: 0
[2026-01-09 17:42:56] 2026-01-09 22:42:56,307 [wrapper] pandaids: 6963188121
[2026-01-09 17:42:56] 2026-01-09 22:42:56,344 [wrapper] cleanup supervisor_pilot 3373701 3255038
[2026-01-09 17:42:56] 2026-01-09 22:42:56,347 [wrapper] Test setup, not cleaning
[2026-01-09 17:42:56] 2026-01-09 22:42:56,350 [wrapper] apfmon messages muted
[2026-01-09 17:42:56] 2026-01-09 22:42:56,352 [wrapper] ==== wrapper stdout END ====
[2026-01-09 17:42:56] 2026-01-09 22:42:56,354 [wrapper] ==== wrapper stderr END ====
[2026-01-09 17:42:56]  *** Error codes and diagnostics ***
[2026-01-09 17:42:56]     "exeErrorCode": 0,
[2026-01-09 17:42:56]     "exeErrorDiag": "",
[2026-01-09 17:42:56]     "pilotErrorCode": 0,
[2026-01-09 17:42:56]     "pilotErrorDiag": "",
[2026-01-09 17:42:56]  *** Listing of results directory ***
[2026-01-09 17:42:56] total 439168
[2026-01-09 17:42:56] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 23:21 queuedata.json
[2026-01-09 17:42:56] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 17:42:56] -rwx------. 1 boincer umatlas     36322 Jan  8 23:22 runpilot2-wrapper.sh
[2026-01-09 17:42:56] -rw-r--r--. 1 boincer umatlas       100 Jan  9 15:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 17:42:56] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 15:33 run_atlas
[2026-01-09 17:42:56] -rw-r--r--. 1 boincer umatlas       105 Jan  9 15:33 job.xml
[2026-01-09 17:42:56] -rw-r--r--. 2 boincer umatlas 224067538 Jan  9 15:33 EVNT.47898824._001430.pool.root.1
[2026-01-09 17:42:56] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 15:33 start_atlas.sh
[2026-01-09 17:42:56] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 15:33 shared
[2026-01-09 17:42:56] -rw-r--r--. 2 boincer umatlas    592395 Jan  9 15:33 input.tar.gz
[2026-01-09 17:42:56] -rw-r--r--. 1 boincer umatlas         0 Jan  9 15:33 boinc_lockfile
[2026-01-09 17:42:56] -rw-r--r--. 1 boincer umatlas      2517 Jan  9 15:33 pandaJob.out
[2026-01-09 17:42:56] -rw-------. 1 boincer umatlas    989381 Jan  9 15:33 agis_schedconf.cvmfs.json
[2026-01-09 17:42:56] -rw-------. 1 boincer umatlas   1516240 Jan  9 15:33 agis_ddmendpoints.agis.ALL.json
[2026-01-09 17:42:56] drwx------. 5 boincer umatlas      4096 Jan  9 15:33 pilot3
[2026-01-09 17:42:56] -rw-r--r--. 1 boincer umatlas      6529 Jan  9 17:39 init_data.xml
[2026-01-09 17:42:56] -rw-r--r--. 1 boincer umatlas       529 Jan  9 17:41 boinc_task_state.xml
[2026-01-09 17:42:56] -rw-------. 1 boincer umatlas 218739889 Jan  9 17:41 HITS.47898826._037274.pool.root.1
[2026-01-09 17:42:56] -rw-------. 1 boincer umatlas        95 Jan  9 17:41 pilot_heartbeat.json
[2026-01-09 17:42:56] -rw-------. 1 boincer umatlas      1031 Jan  9 17:41 memory_monitor_summary.json
[2026-01-09 17:42:56] -rw-------. 1 boincer umatlas    374714 Jan  9 17:41 log.47898826._037274.job.log.tgz.1
[2026-01-09 17:42:56] -rw-------. 1 boincer umatlas      7812 Jan  9 17:41 heartbeat.json
[2026-01-09 17:42:56] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 17:42 boinc_mmap_file
[2026-01-09 17:42:56] -rw-r--r--. 1 boincer umatlas        27 Jan  9 17:42 wrapper_checkpoint.txt
[2026-01-09 17:42:56] -rw-------. 1 boincer umatlas      4624 Jan  9 17:42 pilotlog.txt
[2026-01-09 17:42:56] -rw-------. 1 boincer umatlas   1118079 Jan  9 17:42 log.47898826._037274.job.log.1
[2026-01-09 17:42:56] -rw-------. 1 boincer umatlas       357 Jan  9 17:42 output.list
[2026-01-09 17:42:56] -rw-r--r--. 1 boincer umatlas       620 Jan  9 17:42 runtime_log
[2026-01-09 17:42:56] -rw-------. 1 boincer umatlas   1515520 Jan  9 17:42 result.tar.gz
[2026-01-09 17:42:56] -rw-r--r--. 1 boincer umatlas      8817 Jan  9 17:42 runtime_log.err
[2026-01-09 17:42:56] -rw-------. 1 boincer umatlas       652 Jan  9 17:42 HTcLDmnBJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmp4lKDmQbQiun.diag
[2026-01-09 17:42:56] -rw-r--r--. 1 boincer umatlas     21328 Jan  9 17:42 stderr.txt
[2026-01-09 17:42:56] HITS file was successfully produced:
[2026-01-09 17:42:56] -rw-------. 1 boincer umatlas 218739889 Jan  9 17:41 shared/HITS.pool.root.1
[2026-01-09 17:42:56]  *** Contents of shared directory: ***
[2026-01-09 17:42:56] total 434516
[2026-01-09 17:42:56] -rw-r--r--. 2 boincer umatlas 224067538 Jan  9 15:33 ATLAS.root_0
[2026-01-09 17:42:56] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 15:33 start_atlas.sh
[2026-01-09 17:42:56] -rw-r--r--. 2 boincer umatlas    592395 Jan  9 15:33 input.tar.gz
[2026-01-09 17:42:56] -rw-------. 1 boincer umatlas 218739889 Jan  9 17:41 HITS.pool.root.1
[2026-01-09 17:42:56] -rw-------. 1 boincer umatlas   1515520 Jan  9 17:42 result.tar.gz
17:42:57 (3251350): run_atlas exited; CPU time 64087.759354
17:42:57 (3251350): called boinc_finish(0)

</stderr_txt>
]]>

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