Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:10:49 (2955285): wrapper (7.7.26015): starting
17:10:49 (2955285): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 17:10:49] Arguments: --nthreads 8
[2026-01-09 17:10:49] Threads: 8
[2026-01-09 17:10:49] Checking for CVMFS
[2026-01-09 17:10:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 17:10:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 17:10:50] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 17:10:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 17:10:51] 2.13.3.0 12468 93995 418672 154957 1 346 19126032 32947201 20891 16776704 0 334264150 99.424 498429983 34081 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 17:10:51] CVMFS is ok
[2026-01-09 17:10:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 17:10:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 17:10:51] Further information can be found at the LHC@home message board.
[2026-01-09 17:10:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 17:10:51] Checking for apptainer binary...
[2026-01-09 17:10:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 17:10:51] Running /usr/bin/apptainer --version
[2026-01-09 17:10:51] apptainer version 1.4.5-2.el9
[2026-01-09 17:10:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 17:10:52] c6-6-8-1.aglt2.org
[2026-01-09 17:10:52] apptainer works
[2026-01-09 17:10:52] Set ATHENA_PROC_NUMBER=8
[2026-01-09 17:10:52] Set ATHENA_CORE_NUMBER=8
[2026-01-09 17:10:52] Starting ATLAS job with PandaID=6963188173
[2026-01-09 17:10:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 02:40:19]  *** The last 200 lines of the pilot log: ***
[2026-01-10 02:40:19] 2026-01-10 07:39:13,446 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 02:40:19] 2026-01-10 07:39:13,446 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 02:40:19] 2026-01-10 07:39:13,447 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 02:40:19] 2026-01-10 07:39:13,447 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 02:40:19] 2026-01-10 07:39:13,510 | INFO     | fitting pss+swap vs Time
[2026-01-10 02:40:19] 2026-01-10 07:39:13,511 | INFO     | sum of square deviations: 53009707521.66875
[2026-01-10 02:40:19] 2026-01-10 07:39:13,577 | INFO     | sum of deviations: 469663059215.3347
[2026-01-10 02:40:19] 2026-01-10 07:39:13,577 | INFO     | mean x: 1768013770.0774775
[2026-01-10 02:40:19] 2026-01-10 07:39:13,577 | INFO     | mean y: 2478451.410810811
[2026-01-10 02:40:19] 2026-01-10 07:39:13,577 | INFO     | intersect: -15662025180.30599
[2026-01-10 02:40:19] 2026-01-10 07:39:13,578 | INFO     | chi2: 5.941264353819093
[2026-01-10 02:40:19] 2026-01-10 07:39:13,579 | INFO     | sum of square deviations: 51589855630.29246
[2026-01-10 02:40:19] 2026-01-10 07:39:13,645 | INFO     | sum of deviations: 499550888529.824
[2026-01-10 02:40:19] 2026-01-10 07:39:13,646 | INFO     | mean x: 1768013617.5763636
[2026-01-10 02:40:19] 2026-01-10 07:39:13,646 | INFO     | mean y: 2481633.8018181818
[2026-01-10 02:40:19] 2026-01-10 07:39:13,646 | INFO     | intersect: -17117410693.915749
[2026-01-10 02:40:19] 2026-01-10 07:39:13,647 | INFO     | chi2: 5.258930851488108
[2026-01-10 02:40:19] 2026-01-10 07:39:13,647 | INFO     | current chi2=5.258930851488108 (change=11.484651442792227 %)
[2026-01-10 02:40:19] 2026-01-10 07:39:13,647 | INFO     | right removable region: 549
[2026-01-10 02:40:19] 2026-01-10 07:39:13,648 | INFO     | sum of square deviations: 51589863134.13802
[2026-01-10 02:40:19] 2026-01-10 07:39:13,695 | INFO     | sum of deviations: 298458564019.21484
[2026-01-10 02:40:19] 2026-01-10 07:39:13,695 | INFO     | mean x: 1768013922.5781817
[2026-01-10 02:40:19] 2026-01-10 07:39:13,696 | INFO     | mean y: 2496829.1345454548
[2026-01-10 02:40:19] 2026-01-10 07:39:13,696 | INFO     | intersect: -10225847741.709797
[2026-01-10 02:40:19] 2026-01-10 07:39:13,697 | INFO     | chi2: 2.474105229714813
[2026-01-10 02:40:19] 2026-01-10 07:39:13,697 | INFO     | current chi2=2.474105229714813 (change=58.35726063721709 %)
[2026-01-10 02:40:19] 2026-01-10 07:39:13,715 | INFO     | sum of square deviations: 50195600621.60722
[2026-01-10 02:40:19] 2026-01-10 07:39:13,717 | INFO     | monitor loop #2164: job 0:6963188173 is in state 'finished'
[2026-01-10 02:40:19] 2026-01-10 07:39:13,763 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 02:40:19] 2026-01-10 07:39:13,745 | INFO     | sum of deviations: 189227184582.35403
[2026-01-10 02:40:19] 2026-01-10 07:39:13,764 | INFO     | mean x: 1768014075.0788991
[2026-01-10 02:40:19] 2026-01-10 07:39:13,764 | INFO     | mean y: 2508764.456880734
[2026-01-10 02:40:19] 2026-01-10 07:39:13,764 | INFO     | intersect: -6662543980.925382
[2026-01-10 02:40:19] 2026-01-10 07:39:13,765 | INFO     | chi2: 1.1061781709801077
[2026-01-10 02:40:19] 2026-01-10 07:39:13,765 | INFO     | current chi2=1.1061781709801077 (change=55.289768693160426 %)
[2026-01-10 02:40:19] 2026-01-10 07:39:13,766 | INFO     | sum of square deviations: 48826720665.73342
[2026-01-10 02:40:19] 2026-01-10 07:39:13,812 | INFO     | sum of deviations: 148782316211.08875
[2026-01-10 02:40:19] 2026-01-10 07:39:13,813 | INFO     | mean x: 1768014227.5777779
[2026-01-10 02:40:19] 2026-01-10 07:39:13,813 | INFO     | mean y: 2513270.3074074076
[2026-01-10 02:40:19] 2026-01-10 07:39:13,813 | INFO     | intersect: -5384890353.909131
[2026-01-10 02:40:19] 2026-01-10 07:39:13,814 | INFO     | chi2: 0.9520623536204804
[2026-01-10 02:40:19] 2026-01-10 07:39:13,814 | INFO     | current chi2=0.9520623536204804 (change=13.932277946063246 %)
[2026-01-10 02:40:19] 2026-01-10 07:39:13,814 | INFO     | left removable region: 30
[2026-01-10 02:40:19] 2026-01-10 07:39:13,836 | INFO     | sum of square deviations: 43348851307.76093
[2026-01-10 02:40:19] 2026-01-10 07:39:13,863 | INFO     | sum of deviations: 110643921549.86517
[2026-01-10 02:40:19] 2026-01-10 07:39:13,883 | INFO     | mean x: 1768014502.078998
[2026-01-10 02:40:19] 2026-01-10 07:39:13,883 | INFO     | mean y: 2524954.125240848
[2026-01-10 02:40:19] 2026-01-10 07:39:13,884 | INFO     | intersect: -4510168046.162633
[2026-01-10 02:40:19] 2026-01-10 07:39:13,885 | INFO     | chi2: 0.06518987098269874
[2026-01-10 02:40:19] 2026-01-10 07:39:13,885 | INFO     | current memory leak: 2.55 B/s (using 519 data points, chi2=0.07)
[2026-01-10 02:40:19] 2026-01-10 07:39:13,886 | INFO     | could have reported an average CPU frequency of 2657 MHz (22 samples)
[2026-01-10 02:40:19] 2026-01-10 07:39:13,886 | INFO     | ..............................
[2026-01-10 02:40:19] 2026-01-10 07:39:13,886 | INFO     | . Timing measurements:
[2026-01-10 02:40:19] 2026-01-10 07:39:13,886 | INFO     | . get job = 0 s
[2026-01-10 02:40:19] 2026-01-10 07:39:13,886 | INFO     | . initial setup = 8 s
[2026-01-10 02:40:19] 2026-01-10 07:39:13,886 | INFO     | . payload setup = 42 s
[2026-01-10 02:40:19] 2026-01-10 07:39:13,886 | INFO     | . stage-in = 0 s
[2026-01-10 02:40:19] 2026-01-10 07:39:13,886 | INFO     | . payload execution = 33863 s
[2026-01-10 02:40:19] 2026-01-10 07:39:13,887 | INFO     | . stage-out = 6 s
[2026-01-10 02:40:19] 2026-01-10 07:39:13,887 | INFO     | . log creation = 1 s
[2026-01-10 02:40:19] 2026-01-10 07:39:13,887 | INFO     | ..............................
[2026-01-10 02:40:19] 2026-01-10 07:39:14,429 | INFO     | 
[2026-01-10 02:40:19] 2026-01-10 07:39:14,429 | INFO     | job summary report
[2026-01-10 02:40:19] 2026-01-10 07:39:14,429 | INFO     | --------------------------------------------------
[2026-01-10 02:40:19] 2026-01-10 07:39:14,430 | INFO     | PanDA job id: 6963188173
[2026-01-10 02:40:19] 2026-01-10 07:39:14,430 | INFO     | task id: 47898826
[2026-01-10 02:40:19] 2026-01-10 07:39:14,430 | INFO     | errors: (none)
[2026-01-10 02:40:19] 2026-01-10 07:39:14,430 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 02:40:19] 2026-01-10 07:39:14,430 | INFO     | pilot state: finished 
[2026-01-10 02:40:19] 2026-01-10 07:39:14,430 | INFO     | transexitcode: 0
[2026-01-10 02:40:19] 2026-01-10 07:39:14,430 | INFO     | exeerrorcode: 0
[2026-01-10 02:40:19] 2026-01-10 07:39:14,430 | INFO     | exeerrordiag: 
[2026-01-10 02:40:19] 2026-01-10 07:39:14,430 | INFO     | exitcode: 0
[2026-01-10 02:40:19] 2026-01-10 07:39:14,430 | INFO     | exitmsg: OK
[2026-01-10 02:40:19] 2026-01-10 07:39:14,430 | INFO     | cpuconsumptiontime: 60910 s
[2026-01-10 02:40:19] 2026-01-10 07:39:14,430 | INFO     | nevents: 400
[2026-01-10 02:40:19] 2026-01-10 07:39:14,430 | INFO     | neventsw: 0
[2026-01-10 02:40:19] 2026-01-10 07:39:14,431 | INFO     | pid: 2971529
[2026-01-10 02:40:19] 2026-01-10 07:39:14,431 | INFO     | pgrp: 2971529
[2026-01-10 02:40:19] 2026-01-10 07:39:14,431 | INFO     | corecount: 8
[2026-01-10 02:40:19] 2026-01-10 07:39:14,431 | INFO     | event service: False
[2026-01-10 02:40:19] 2026-01-10 07:39:14,431 | INFO     | sizes: {0: 2283742, 1: 2283798, 2: 2284025, 3: 2284025, 4: 2284053, 15: 2284081, 26: 2284237, 33: 2284527, 38: 2284583, 33910: 2324685, 33918: 2333683, 33921: 2334
[2026-01-10 02:40:19] 2026-01-10 07:39:14,431 | INFO     | --------------------------------------------------
[2026-01-10 02:40:19] 2026-01-10 07:39:14,431 | INFO     | 
[2026-01-10 02:40:19] 2026-01-10 07:39:14,431 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-01-10 02:40:19] 2026-01-10 07:39:14,640 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 02:40:19] 2026-01-10 07:39:14,640 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 02:40:19] 2026-01-10 07:39:14,640 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 02:40:19] 2026-01-10 07:39:14,640 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 02:40:19] 2026-01-10 07:39:14,640 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 02:40:19] 2026-01-10 07:39:14,640 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 02:40:19] 2026-01-10 07:39:14,640 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 02:40:19] 2026-01-10 07:39:14,640 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 02:40:19] 2026-01-10 07:39:14,640 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 02:40:19] 2026-01-10 07:39:14,641 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 02:40:19] 2026-01-10 07:39:14,641 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 02:40:19] 2026-01-10 07:39:14,641 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 02:40:19] 2026-01-10 07:39:14,641 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 02:40:19] 2026-01-10 07:39:14,641 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 02:40:19] 2026-01-10 07:39:14,641 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 02:40:19] 2026-01-10 07:39:14,641 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 02:40:19] 2026-01-10 07:39:14,641 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 02:40:19] 2026-01-10 07:39:14,641 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 02:40:19] 2026-01-10 07:39:14,641 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 02:40:19] 2026-01-10 07:39:14,641 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 02:40:19] 2026-01-10 07:39:14,641 | INFO     | job 6963188173 has completed (purged errors)
[2026-01-10 02:40:19] 2026-01-10 07:39:14,642 | INFO     | overall cleanup function is called
[2026-01-10 02:40:19] 2026-01-10 07:39:15,668 | INFO     | --- collectZombieJob: --- 10, [2971529]
[2026-01-10 02:40:19] 2026-01-10 07:39:15,668 | INFO     | zombie collector waiting for pid 2971529
[2026-01-10 02:40:19] 2026-01-10 07:39:15,669 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 02:40:19] 2026-01-10 07:39:15,669 | INFO     | collected zombie processes
[2026-01-10 02:40:19] 2026-01-10 07:39:15,669 | INFO     | will attempt to kill all subprocesses of pid=2971529
[2026-01-10 02:40:19] 2026-01-10 07:39:16,372 | INFO     | PID=2960894 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 02:40:19] 2026-01-10 07:39:16,372 | INFO     | .. there are 14 such processes running
[2026-01-10 02:40:19] 2026-01-10 07:39:17,240 | INFO     | process IDs to be killed: [2971529] (in reverse order)
[2026-01-10 02:40:19] 2026-01-10 07:39:17,615 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 02:40:19] 2026-01-10 07:39:17,616 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 02:40:19] 2026-01-10 07:39:17,640 | INFO     | did not find any defunct processes belonging to 2971529
[2026-01-10 02:40:19] 2026-01-10 07:39:17,653 | INFO     | did not find any defunct processes belonging to 2971529
[2026-01-10 02:40:19] 2026-01-10 07:39:17,653 | INFO     | ready for new job
[2026-01-10 02:40:19] 2026-01-10 07:39:17,653 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 02:40:19] 2026-01-10 07:39:17,677 | INFO     | ***************************************
[2026-01-10 02:40:19] 2026-01-10 07:39:17,678 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 02:40:19] 2026-01-10 07:39:17,678 | INFO     | ***************************************
[2026-01-10 02:40:19] 2026-01-10 07:39:17,678 | INFO     | 
[2026-01-10 02:40:19] 2026-01-10 07:39:17,717 | INFO     | architecture information:
[2026-01-10 02:40:19] 2026-01-10 07:39:17,726 | INFO     | executing command: cat /etc/os-release
[2026-01-10 02:40:19] 2026-01-10 07:39:17,845 | INFO     | cat /etc/os-release:
[2026-01-10 02:40:19] NAME="CentOS Linux"
[2026-01-10 02:40:19] VERSION="7 (Core)"
[2026-01-10 02:40:19] ID="centos"
[2026-01-10 02:40:19] ID_LIKE="rhel fedora"
[2026-01-10 02:40:19] VERSION_ID="7"
[2026-01-10 02:40:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 02:40:19] ANSI_COLOR="0;31"
[2026-01-10 02:40:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 02:40:19] HOME_URL="https://www.centos.org/"
[2026-01-10 02:40:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 02:40:19] 
[2026-01-10 02:40:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 02:40:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 02:40:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 02:40:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 02:40:19] 
[2026-01-10 02:40:19] 2026-01-10 07:39:17,846 | INFO     | ***************************************
[2026-01-10 02:40:19] 2026-01-10 07:39:18,349 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-01-10 02:40:19] 2026-01-10 07:39:18,458 | INFO     | sufficient remaining disk space (75495374848 B)
[2026-01-10 02:40:19] 2026-01-10 07:39:18,458 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 02:40:19] 2026-01-10 07:39:18,458 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 02:40:19] 2026-01-10 07:39:18,458 | INFO     | update_server=False
[2026-01-10 02:40:19] 2026-01-10 07:39:18,458 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 02:40:19] 2026-01-10 07:39:18,800 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 02:40:19] 2026-01-10 07:39:18,800 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 02:40:19] 2026-01-10 07:39:18,804 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 02:40:19] 2026-01-10 07:39:18,804 | INFO     | will abort loop
[2026-01-10 02:40:19] 2026-01-10 07:39:19,199 | INFO     | all data control threads have been joined
[2026-01-10 02:40:19] 2026-01-10 07:39:19,301 | INFO     | all payload control threads have been joined
[2026-01-10 02:40:19] 2026-01-10 07:39:19,389 | INFO     | all job control threads have been joined
[2026-01-10 02:40:19] 2026-01-10 07:39:19,445 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 02:40:19] 2026-01-10 07:39:19,464 | INFO     | [job] retrieve thread has finished
[2026-01-10 02:40:19] 2026-01-10 07:39:19,495 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 02:40:19] 2026-01-10 07:39:19,810 | INFO     | [job] job monitor thread has finished
[2026-01-10 02:40:19] 2026-01-10 07:39:19,860 | INFO     | [payload] failed_post thread has finished
[2026-01-10 02:40:19] 2026-01-10 07:39:20,189 | INFO     | [job] validate thread has finished
[2026-01-10 02:40:19] 2026-01-10 07:39:20,205 | INFO     | [data] control thread has finished
[2026-01-10 02:40:19] 2026-01-10 07:39:20,225 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 02:40:19] 2026-01-10 07:39:20,238 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 02:40:19] 2026-01-10 07:39:20,239 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 02:40:19] 2026-01-10 07:39:20,307 | INFO     | [payload] control thread has finished
[2026-01-10 02:40:19] 2026-01-10 07:39:20,395 | INFO     | [job] control thread has finished
[2026-01-10 02:40:19] 2026-01-10 07:39:20,451 | INFO     | [job] queue monitor thread has finished
[2026-01-10 02:40:19] 2026-01-10 07:39:20,489 | INFO     | [payload] validate_post thread has finished
[2026-01-10 02:40:19] 2026-01-10 07:39:20,804 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 02:40:19] 2026-01-10 07:39:20,836 | INFO     | [data] copytool_in thread has finished
[2026-01-10 02:40:19] 2026-01-10 07:39:21,502 | INFO     | [data] copytool_out thread has finished
[2026-01-10 02:40:19] 2026-01-10 07:39:21,625 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 02:40:19] 2026-01-10 07:39:25,634 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 02:40:19] 2026-01-10 07:39:50,097 | INFO     | PID=2960894 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 02:40:19] 2026-01-10 07:39:50,098 | INFO     | .. there are 14 such processes running
[2026-01-10 02:40:19] 2026-01-10 07:39:50,098 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 02:40:19] 2026-01-10 07:39:50,099 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 02:40:19] 2026-01-10 07:39:50,099 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 02:40:19] 2026-01-10 07:40:10,028 | INFO     | [monitor] cgroup control has ended
[2026-01-10 02:40:19] 2026-01-10 07:40:11,680 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139828595095360)>', '<ExcThread(monitor, started 139827810916096)>']
[2026-01-10 02:40:19] 2026-01-10 07:40:12,228 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 02:40:19] 2026-01-10 07:40:12,228 | INFO     | [monitor] control thread has ended
[2026-01-10 02:40:19] 2026-01-10 07:40:16,706 | INFO     | all workflow threads have been joined
[2026-01-10 02:40:19] 2026-01-10 07:40:16,710 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 02:40:19] 2026-01-10 07:40:16,711 | INFO     | traces error code: 0
[2026-01-10 02:40:19] 2026-01-10 07:40:16,711 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 02:40:19] 2026-01-10 07:40:17,527 [wrapper] ==== pilot stdout END ====
[2026-01-10 02:40:19] 2026-01-10 07:40:17,542 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 02:40:19] 2026-01-10 07:40:17,558 [wrapper] pilotpid: 2960894
[2026-01-10 02:40:19] 2026-01-10 07:40:17,581 [wrapper] Pilot exit status: 0
[2026-01-10 02:40:19] 2026-01-10 07:40:17,683 [wrapper] pandaids: 6963188173
[2026-01-10 02:40:19] 2026-01-10 07:40:18,439 [wrapper] cleanup supervisor_pilot   87040 2960895
[2026-01-10 02:40:19] 2026-01-10 07:40:18,451 [wrapper] Test setup, not cleaning
[2026-01-10 02:40:19] 2026-01-10 07:40:18,475 [wrapper] apfmon messages muted
[2026-01-10 02:40:19] 2026-01-10 07:40:18,526 [wrapper] ==== wrapper stdout END ====
[2026-01-10 02:40:19] 2026-01-10 07:40:18,602 [wrapper] ==== wrapper stderr END ====
[2026-01-10 02:40:19]  *** Error codes and diagnostics ***
[2026-01-10 02:40:19]     "exeErrorCode": 0,
[2026-01-10 02:40:19]     "exeErrorDiag": "",
[2026-01-10 02:40:19]     "pilotErrorCode": 0,
[2026-01-10 02:40:19]     "pilotErrorDiag": "",
[2026-01-10 02:40:19]  *** Listing of results directory ***
[2026-01-10 02:40:19] total 449340
[2026-01-10 02:40:19] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 23:21 queuedata.json
[2026-01-10 02:40:19] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-10 02:40:19] -rwx------ 1 boincer umatlas     36322 Jan  8 23:22 runpilot2-wrapper.sh
[2026-01-10 02:40:19] -rw-r--r-- 1 boincer umatlas       100 Jan  9 17:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 02:40:19] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 17:10 run_atlas
[2026-01-10 02:40:19] -rw-r--r-- 1 boincer umatlas       105 Jan  9 17:10 job.xml
[2026-01-10 02:40:19] -rw-r--r-- 2 boincer umatlas 222825370 Jan  9 17:10 EVNT.47898824._001432.pool.root.1
[2026-01-10 02:40:19] drwxrwx--x 2 boincer umatlas      4096 Jan  9 17:10 shared
[2026-01-10 02:40:19] -rw-r--r-- 2 boincer umatlas    592397 Jan  9 17:10 input.tar.gz
[2026-01-10 02:40:19] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 17:10 start_atlas.sh
[2026-01-10 02:40:19] -rw-r--r-- 1 boincer umatlas         0 Jan  9 17:10 boinc_lockfile
[2026-01-10 02:40:19] -rw-r--r-- 1 boincer umatlas      2519 Jan  9 17:10 pandaJob.out
[2026-01-10 02:40:19] -rw------- 1 boincer umatlas        57 Jan  9 17:10 setup.sh.local
[2026-01-10 02:40:19] -rw------- 1 boincer umatlas    989398 Jan  9 17:12 agis_schedconf.cvmfs.json
[2026-01-10 02:40:19] drwx------ 5 boincer umatlas      4096 Jan  9 17:12 pilot3
[2026-01-10 02:40:19] -rw------- 1 boincer umatlas 223187563 Jan 10 02:37 HITS.47898826._037326.pool.root.1
[2026-01-10 02:40:19] -rw-r--r-- 1 boincer umatlas       531 Jan 10 02:37 boinc_task_state.xml
[2026-01-10 02:40:19] -rw-r--r-- 1 boincer umatlas      6877 Jan 10 02:37 init_data.xml
[2026-01-10 02:40:19] -rw------- 1 boincer umatlas      1039 Jan 10 02:38 memory_monitor_summary.json
[2026-01-10 02:40:19] -rw------- 1 boincer umatlas   1516240 Jan 10 02:38 agis_ddmendpoints.agis.ALL.json
[2026-01-10 02:40:19] -rw------- 1 boincer umatlas    707854 Jan 10 02:38 log.47898826._037326.job.log.tgz.1
[2026-01-10 02:40:19] -rw------- 1 boincer umatlas      7816 Jan 10 02:39 heartbeat.json
[2026-01-10 02:40:19] -rw-r--r-- 1 boincer umatlas      8192 Jan 10 02:39 boinc_mmap_file
[2026-01-10 02:40:19] -rw-r--r-- 1 boincer umatlas        28 Jan 10 02:39 wrapper_checkpoint.txt
[2026-01-10 02:40:19] -rw------- 1 boincer umatlas        95 Jan 10 02:39 pilot_heartbeat.json
[2026-01-10 02:40:19] -rw------- 1 boincer umatlas      5010 Jan 10 02:40 pilotlog.txt
[2026-01-10 02:40:19] -rw------- 1 boincer umatlas   4389359 Jan 10 02:40 log.47898826._037326.job.log.1
[2026-01-10 02:40:19] -rw------- 1 boincer umatlas       357 Jan 10 02:40 output.list
[2026-01-10 02:40:19] -rw-r--r-- 1 boincer umatlas       620 Jan 10 02:40 runtime_log
[2026-01-10 02:40:19] -rw------- 1 boincer umatlas   5120000 Jan 10 02:40 result.tar.gz
[2026-01-10 02:40:19] -rw-r--r-- 1 boincer umatlas      9343 Jan 10 02:40 runtime_log.err
[2026-01-10 02:40:19] -rw------- 1 boincer umatlas       658 Jan 10 02:40 HTuMDmnBJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmE5lKDmd9PWTo.diag
[2026-01-10 02:40:19] -rw-r--r-- 1 boincer umatlas     21299 Jan 10 02:40 stderr.txt
[2026-01-10 02:40:19] HITS file was successfully produced:
[2026-01-10 02:40:19] -rw------- 1 boincer umatlas 223187563 Jan 10 02:37 shared/HITS.pool.root.1
[2026-01-10 02:40:19]  *** Contents of shared directory: ***
[2026-01-10 02:40:19] total 441164
[2026-01-10 02:40:19] -rw-r--r-- 2 boincer umatlas 222825370 Jan  9 17:10 ATLAS.root_0
[2026-01-10 02:40:19] -rw-r--r-- 2 boincer umatlas    592397 Jan  9 17:10 input.tar.gz
[2026-01-10 02:40:19] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 17:10 start_atlas.sh
[2026-01-10 02:40:19] -rw------- 1 boincer umatlas 223187563 Jan 10 02:37 HITS.pool.root.1
[2026-01-10 02:40:19] -rw------- 1 boincer umatlas   5120000 Jan 10 02:40 result.tar.gz
02:40:21 (2955285): run_atlas exited; CPU time 62332.581449
02:40:21 (2955285): called boinc_finish(0)

</stderr_txt>
]]>

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