Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:27:06 (849554): wrapper (7.7.26015): starting
18:27:06 (849554): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 18:27:06] Arguments: --nthreads 12
[2026-01-10 18:27:06] Threads: 12
[2026-01-10 18:27:06] Checking for CVMFS
[2026-01-10 18:27:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 18:27:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 18:27:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 18:27:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 18:27:07] 2.13.3.0 36987 4612 94204 154987 3 59 35446270 46080001 922 130560 0 7509296 99.995 173240 24242 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2026-01-10 18:27:07] CVMFS is ok
[2026-01-10 18:27:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 18:27:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 18:27:07] Further information can be found at the LHC@home message board.
[2026-01-10 18:27:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 18:27:07] Checking for apptainer binary...
[2026-01-10 18:27:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 18:27:07] Running /usr/bin/apptainer --version
[2026-01-10 18:27:07] apptainer version 1.4.5-2.el9
[2026-01-10 18:27:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 18:27:07] minis01.farm.particle.cz
[2026-01-10 18:27:07] apptainer works
[2026-01-10 18:27:07] Set ATHENA_PROC_NUMBER=12
[2026-01-10 18:27:07] Set ATHENA_CORE_NUMBER=12
[2026-01-10 18:27:07] Starting ATLAS job with PandaID=6963155645
[2026-01-10 18:27:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 19:42:26]  *** The last 200 lines of the pilot log: ***
[2026-01-10 19:42:26]  protocol_id=None
[2026-01-10 19:42:26]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 19:42:26]  replicas=None
[2026-01-10 19:42:26]  scope=mc23_13p6TeV
[2026-01-10 19:42:26]  status=None
[2026-01-10 19:42:26]  status_code=0
[2026-01-10 19:42:26]  storage_token=
[2026-01-10 19:42:26]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6963155645/log.47898826._030867.job.log.tgz.1
[2026-01-10 19:42:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/90/log.47898826._030867.job.log.tgz.1
[2026-01-10 19:42:26]  workdir=None
[2026-01-10 19:42:26] ]
[2026-01-10 19:42:26] 2026-01-10 18:41:17,009 | INFO     | transferring file log.47898826._030867.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6963155645/log.47898826._030867.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-01-10 19:42:26] 2026-01-10 18:41:17,009 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6963155645/log.47898826._030867.job.log.tgz.1 /var/lib/boinc/slots/0/log.47898826._030867.job
[2026-01-10 19:42:26] 2026-01-10 18:41:17,024 | INFO     | adding to output.list: log.47898826._030867.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/90/log.47898826._030867.job.log.tg
[2026-01-10 19:42:26] 2026-01-10 18:41:17,025 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 19:42:26] 2026-01-10 18:41:17,025 | INFO     | summary of transferred files:
[2026-01-10 19:42:26] 2026-01-10 18:41:17,025 | INFO     |  -- lfn=log.47898826._030867.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 19:42:26] 2026-01-10 18:41:17,025 | INFO     | stage-out finished correctly
[2026-01-10 19:42:26] 2026-01-10 18:41:17,515 | INFO     | time since job start (4442s) is within the limit (349056.0s)
[2026-01-10 19:42:26] 2026-01-10 18:41:17,634 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 19:42:26] 2026-01-10 18:41:19,322 | INFO     | monitor loop #335: job 0:6963155645 is in state 'finished'
[2026-01-10 19:42:26] 2026-01-10 18:41:19,322 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:42:26] 2026-01-10 18:41:19,521 | INFO     | time since job start (4444s) is within the limit (349056.0s)
[2026-01-10 19:42:26] 2026-01-10 18:41:19,834 | INFO     | job 6963155645 has state=finished
[2026-01-10 19:42:26] 2026-01-10 18:41:19,835 | INFO     | preparing for final server update for job 6963155645 in state='finished'
[2026-01-10 19:42:26] 2026-01-10 18:41:20,377 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-10 19:42:26] 2026-01-10 18:41:20,378 | INFO     | this job has now completed (state=finished)
[2026-01-10 19:42:26] 2026-01-10 18:41:20,378 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 19:42:26] 2026-01-10 18:41:20,378 | INFO     | log transfer has been attempted: DONE
[2026-01-10 19:42:26] 2026-01-10 18:41:20,378 | INFO     | job 6963155645 has finished - writing final server update
[2026-01-10 19:42:26] 2026-01-10 18:41:20,378 | INFO     | total number of processed events: 400 (read)
[2026-01-10 19:42:26] 2026-01-10 18:41:20,379 | INFO     | executing command: lscpu
[2026-01-10 19:42:26] 2026-01-10 18:41:20,412 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 19:42:26] 2026-01-10 18:41:21,526 | INFO     | time since job start (4446s) is within the limit (349056.0s)
[2026-01-10 19:42:26] 2026-01-10 18:41:21,825 | INFO     | monitor loop #336: job 0:6963155645 is in state 'finished'
[2026-01-10 19:42:26] 2026-01-10 18:41:21,825 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:42:26] 2026-01-10 18:41:23,531 | INFO     | time since job start (4448s) is within the limit (349056.0s)
[2026-01-10 19:42:26] 2026-01-10 18:41:23,936 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 19:42:26] 2026-01-10 18:41:23,941 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 2683.0665
[2026-01-10 19:42:26] 2026-01-10 18:41:23,945 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6963155645/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 19:42:26] 2026-01-10 18:41:23,946 | INFO     | extracted standard info from prmon json
[2026-01-10 19:42:26] 2026-01-10 18:41:23,946 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 19:42:26] 2026-01-10 18:41:23,946 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 19:42:26] 2026-01-10 18:41:23,946 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 19:42:26] 2026-01-10 18:41:23,947 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 19:42:26] 2026-01-10 18:41:23,948 | INFO     | fitting pss+swap vs Time
[2026-01-10 19:42:26] 2026-01-10 18:41:23,948 | INFO     | sum of square deviations: 89127252.5
[2026-01-10 19:42:26] 2026-01-10 18:41:23,949 | INFO     | sum of deviations: -5450934441.0
[2026-01-10 19:42:26] 2026-01-10 18:41:23,949 | INFO     | mean x: 1768068345.5
[2026-01-10 19:42:26] 2026-01-10 18:41:23,949 | INFO     | mean y: 2842638.757575758
[2026-01-10 19:42:26] 2026-01-10 18:41:23,949 | INFO     | intersect: 108136150557.43079
[2026-01-10 19:42:26] 2026-01-10 18:41:23,949 | INFO     | chi2: 0.030146166287998623
[2026-01-10 19:42:26] 2026-01-10 18:41:23,949 | INFO     | current memory leak: -61.16 B/s (using 66 data points, chi2=0.03)
[2026-01-10 19:42:26] 2026-01-10 18:41:23,949 | INFO     | could have reported an average CPU frequency of 2728 MHz (6 samples)
[2026-01-10 19:42:26] 2026-01-10 18:41:23,950 | INFO     | ..............................
[2026-01-10 19:42:26] 2026-01-10 18:41:23,950 | INFO     | . Timing measurements:
[2026-01-10 19:42:26] 2026-01-10 18:41:23,950 | INFO     | . get job = 0 s
[2026-01-10 19:42:26] 2026-01-10 18:41:23,950 | INFO     | . initial setup = 1 s
[2026-01-10 19:42:26] 2026-01-10 18:41:23,950 | INFO     | . payload setup = 4 s
[2026-01-10 19:42:26] 2026-01-10 18:41:23,950 | INFO     | . stage-in = 0 s
[2026-01-10 19:42:26] 2026-01-10 18:41:23,950 | INFO     | . payload execution = 4418 s
[2026-01-10 19:42:26] 2026-01-10 18:41:23,950 | INFO     | . stage-out = 0 s
[2026-01-10 19:42:26] 2026-01-10 18:41:23,950 | INFO     | . log creation = 0 s
[2026-01-10 19:42:26] 2026-01-10 18:41:23,950 | INFO     | ..............................
[2026-01-10 19:42:26] 2026-01-10 18:41:24,020 | INFO     | 
[2026-01-10 19:42:26] 2026-01-10 18:41:24,020 | INFO     | job summary report
[2026-01-10 19:42:26] 2026-01-10 18:41:24,020 | INFO     | --------------------------------------------------
[2026-01-10 19:42:26] 2026-01-10 18:41:24,020 | INFO     | PanDA job id: 6963155645
[2026-01-10 19:42:26] 2026-01-10 18:41:24,020 | INFO     | task id: 47898826
[2026-01-10 19:42:26] 2026-01-10 18:41:24,020 | INFO     | errors: (none)
[2026-01-10 19:42:26] 2026-01-10 18:41:24,020 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 19:42:26] 2026-01-10 18:41:24,020 | INFO     | pilot state: finished 
[2026-01-10 19:42:26] 2026-01-10 18:41:24,020 | INFO     | transexitcode: 0
[2026-01-10 19:42:26] 2026-01-10 18:41:24,020 | INFO     | exeerrorcode: 0
[2026-01-10 19:42:26] 2026-01-10 18:41:24,021 | INFO     | exeerrordiag: 
[2026-01-10 19:42:26] 2026-01-10 18:41:24,021 | INFO     | exitcode: 0
[2026-01-10 19:42:26] 2026-01-10 18:41:24,021 | INFO     | exitmsg: OK
[2026-01-10 19:42:26] 2026-01-10 18:41:24,021 | INFO     | cpuconsumptiontime: 48946 s
[2026-01-10 19:42:26] 2026-01-10 18:41:24,021 | INFO     | nevents: 400
[2026-01-10 19:42:26] 2026-01-10 18:41:24,021 | INFO     | neventsw: 0
[2026-01-10 19:42:26] 2026-01-10 18:41:24,021 | INFO     | pid: 860598
[2026-01-10 19:42:26] 2026-01-10 18:41:24,021 | INFO     | pgrp: 860598
[2026-01-10 19:42:26] 2026-01-10 18:41:24,021 | INFO     | corecount: 12
[2026-01-10 19:42:26] 2026-01-10 18:41:24,021 | INFO     | event service: False
[2026-01-10 19:42:26] 2026-01-10 18:41:24,021 | INFO     | sizes: {0: 2283970, 3: 2284232, 11: 2284260, 4426: 2310425, 4428: 2319479, 4434: 2319617}
[2026-01-10 19:42:26] 2026-01-10 18:41:24,021 | INFO     | --------------------------------------------------
[2026-01-10 19:42:26] 2026-01-10 18:41:24,021 | INFO     | 
[2026-01-10 19:42:26] 2026-01-10 18:41:24,021 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2026-01-10 19:42:26] 2026-01-10 18:41:24,037 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 19:42:26] 2026-01-10 18:41:24,038 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 19:42:26] 2026-01-10 18:41:24,038 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 19:42:26] 2026-01-10 18:41:24,038 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 19:42:26] 2026-01-10 18:41:24,038 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 19:42:26] 2026-01-10 18:41:24,038 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 19:42:26] 2026-01-10 18:41:24,038 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 19:42:26] 2026-01-10 18:41:24,038 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 19:42:26] 2026-01-10 18:41:24,039 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 19:42:26] 2026-01-10 18:41:24,039 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 19:42:26] 2026-01-10 18:41:24,039 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 19:42:26] 2026-01-10 18:41:24,039 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 19:42:26] 2026-01-10 18:41:24,039 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 19:42:26] 2026-01-10 18:41:24,039 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 19:42:26] 2026-01-10 18:41:24,039 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 19:42:26] 2026-01-10 18:41:24,039 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 19:42:26] 2026-01-10 18:41:24,040 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 19:42:26] 2026-01-10 18:41:24,040 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 19:42:26] 2026-01-10 18:41:24,040 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 19:42:26] 2026-01-10 18:41:24,040 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 19:42:26] 2026-01-10 18:41:24,040 | INFO     | job 6963155645 has completed (purged errors)
[2026-01-10 19:42:26] 2026-01-10 18:41:24,040 | INFO     | overall cleanup function is called
[2026-01-10 19:42:26] 2026-01-10 18:41:25,050 | INFO     | --- collectZombieJob: --- 10, [860598]
[2026-01-10 19:42:26] 2026-01-10 18:41:25,050 | INFO     | zombie collector waiting for pid 860598
[2026-01-10 19:42:26] 2026-01-10 18:41:25,050 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 19:42:26] 2026-01-10 18:41:25,050 | INFO     | collected zombie processes
[2026-01-10 19:42:26] 2026-01-10 18:41:25,050 | INFO     | will attempt to kill all subprocesses of pid=860598
[2026-01-10 19:42:26] 2026-01-10 18:41:25,200 | INFO     | process IDs to be killed: [860598] (in reverse order)
[2026-01-10 19:42:26] 2026-01-10 18:41:25,253 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 19:42:26] 2026-01-10 18:41:25,254 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 19:42:26] 2026-01-10 18:41:25,260 | INFO     | did not find any defunct processes belonging to 860598
[2026-01-10 19:42:26] 2026-01-10 18:41:25,266 | INFO     | did not find any defunct processes belonging to 860598
[2026-01-10 19:42:26] 2026-01-10 18:41:25,266 | INFO     | ready for new job
[2026-01-10 19:42:26] 2026-01-10 18:41:25,267 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 19:42:26] 2026-01-10 18:41:25,268 | INFO     | ***************************************
[2026-01-10 19:42:26] 2026-01-10 18:41:25,268 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 19:42:26] 2026-01-10 18:41:25,268 | INFO     | ***************************************
[2026-01-10 19:42:26] 2026-01-10 18:41:25,268 | INFO     | 
[2026-01-10 19:42:26] 2026-01-10 18:41:25,271 | INFO     | architecture information:
[2026-01-10 19:42:26] 2026-01-10 18:41:25,271 | INFO     | executing command: cat /etc/os-release
[2026-01-10 19:42:26] 2026-01-10 18:41:25,285 | INFO     | cat /etc/os-release:
[2026-01-10 19:42:26] NAME="CentOS Linux"
[2026-01-10 19:42:26] VERSION="7 (Core)"
[2026-01-10 19:42:26] ID="centos"
[2026-01-10 19:42:26] ID_LIKE="rhel fedora"
[2026-01-10 19:42:26] VERSION_ID="7"
[2026-01-10 19:42:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 19:42:26] ANSI_COLOR="0;31"
[2026-01-10 19:42:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 19:42:26] HOME_URL="https://www.centos.org/"
[2026-01-10 19:42:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 19:42:26] 
[2026-01-10 19:42:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 19:42:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 19:42:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 19:42:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 19:42:26] 
[2026-01-10 19:42:26] 2026-01-10 18:41:25,285 | INFO     | ***************************************
[2026-01-10 19:42:26] 2026-01-10 18:41:25,788 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2026-01-10 19:42:26] 2026-01-10 18:41:25,803 | INFO     | sufficient remaining disk space (64836599808 B)
[2026-01-10 19:42:26] 2026-01-10 18:41:25,804 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 19:42:26] 2026-01-10 18:41:25,804 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 19:42:26] 2026-01-10 18:41:25,804 | INFO     | update_server=False
[2026-01-10 19:42:26] 2026-01-10 18:41:25,804 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 19:42:26] 2026-01-10 18:41:25,805 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 19:42:26] 2026-01-10 18:41:25,805 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:42:26] 2026-01-10 18:41:25,805 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:42:26] 2026-01-10 18:41:25,806 | INFO     | aborting loop
[2026-01-10 19:42:26] 2026-01-10 18:41:26,050 | INFO     | all payload control threads have been joined
[2026-01-10 19:42:26] 2026-01-10 18:41:26,432 | INFO     | all job control threads have been joined
[2026-01-10 19:42:26] 2026-01-10 18:41:26,810 | INFO     | [job] retrieve thread has finished
[2026-01-10 19:42:26] 2026-01-10 18:41:26,811 | INFO     | [job] queue monitor thread has finished
[2026-01-10 19:42:26] 2026-01-10 18:41:26,811 | INFO     | [job] job monitor thread has finished
[2026-01-10 19:42:26] 2026-01-10 18:41:26,813 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 19:42:26] 2026-01-10 18:41:26,819 | INFO     | all data control threads have been joined
[2026-01-10 19:42:26] 2026-01-10 18:41:27,056 | INFO     | [payload] control thread has finished
[2026-01-10 19:42:26] 2026-01-10 18:41:27,385 | INFO     | [job] validate thread has finished
[2026-01-10 19:42:26] 2026-01-10 18:41:27,438 | INFO     | [job] control thread has finished
[2026-01-10 19:42:26] 2026-01-10 18:41:27,533 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 19:42:26] 2026-01-10 18:41:27,533 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 19:42:26] 2026-01-10 18:41:27,533 | INFO     | [payload] validate_post thread has finished
[2026-01-10 19:42:26] 2026-01-10 18:41:27,811 | INFO     | [data] copytool_out thread has finished
[2026-01-10 19:42:26] 2026-01-10 18:41:27,825 | INFO     | [data] control thread has finished
[2026-01-10 19:42:26] 2026-01-10 18:41:27,982 | INFO     | [data] copytool_in thread has finished
[2026-01-10 19:42:26] 2026-01-10 18:41:28,061 | INFO     | [payload] failed_post thread has finished
[2026-01-10 19:42:26] 2026-01-10 18:41:28,212 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 19:42:26] 2026-01-10 18:41:28,265 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 19:42:26] 2026-01-10 18:41:32,218 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 19:42:26] 2026-01-10 18:41:56,791 | INFO     | PID=853415 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 19:42:26] 2026-01-10 18:41:56,791 | INFO     | .. there are 2 such processes running
[2026-01-10 19:42:26] 2026-01-10 18:41:56,791 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 19:42:26] 2026-01-10 18:41:56,791 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 19:42:26] 2026-01-10 18:41:56,791 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 19:42:26] 2026-01-10 18:42:13,228 [wrapper] supervise_pilot (15 min periods counter: 6)
[2026-01-10 19:42:26] 2026-01-10 18:42:21,237 | INFO     | [monitor] cgroup control has ended
[2026-01-10 19:42:26] 2026-01-10 18:42:21,255 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139993121638208)>', '<ExcThread(monitor, started 139992747718400)>']
[2026-01-10 19:42:26] 2026-01-10 18:42:21,918 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 19:42:26] 2026-01-10 18:42:21,918 | INFO     | [monitor] control thread has ended
[2026-01-10 19:42:26] 2026-01-10 18:42:26,280 | INFO     | all workflow threads have been joined
[2026-01-10 19:42:26] 2026-01-10 18:42:26,280 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 19:42:26] 2026-01-10 18:42:26,281 | INFO     | traces error code: 0
[2026-01-10 19:42:26] 2026-01-10 18:42:26,281 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 19:42:26] 2026-01-10 18:42:26,389 [wrapper] ==== pilot stdout END ====
[2026-01-10 19:42:26] 2026-01-10 18:42:26,391 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 19:42:26] 2026-01-10 18:42:26,394 [wrapper] pilotpid: 853415
[2026-01-10 19:42:26] 2026-01-10 18:42:26,396 [wrapper] Pilot exit status: 0
[2026-01-10 19:42:26] 2026-01-10 18:42:26,405 [wrapper] pandaids: 6963155645
[2026-01-10 19:42:26] 2026-01-10 18:42:26,445 [wrapper] cleanup supervisor_pilot  935428 853416
[2026-01-10 19:42:26] 2026-01-10 18:42:26,447 [wrapper] Test setup, not cleaning
[2026-01-10 19:42:26] 2026-01-10 18:42:26,449 [wrapper] apfmon messages muted
[2026-01-10 19:42:26] 2026-01-10 18:42:26,451 [wrapper] ==== wrapper stdout END ====
[2026-01-10 19:42:26] 2026-01-10 18:42:26,454 [wrapper] ==== wrapper stderr END ====
[2026-01-10 19:42:26]  *** Error codes and diagnostics ***
[2026-01-10 19:42:26]     "exeErrorCode": 0,
[2026-01-10 19:42:26]     "exeErrorDiag": "",
[2026-01-10 19:42:26]     "pilotErrorCode": 0,
[2026-01-10 19:42:26]     "pilotErrorDiag": "",
[2026-01-10 19:42:26]  *** Listing of results directory ***
[2026-01-10 19:42:26] total 438664
[2026-01-10 19:42:26] -rw-r--r--. 1 boinc boinc    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-10 19:42:26] -rwx------. 1 boinc boinc     36322 Jan  8 20:06 runpilot2-wrapper.sh
[2026-01-10 19:42:26] -rw-r--r--. 1 boinc boinc      5112 Jan  8 20:07 queuedata.json
[2026-01-10 19:42:26] -rw-r--r--. 1 boinc boinc       100 Jan 10 18:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 19:42:26] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 18:27 run_atlas
[2026-01-10 19:42:26] -rw-r--r--. 1 boinc boinc       105 Jan 10 18:27 job.xml
[2026-01-10 19:42:26] -rw-r--r--. 2 boinc boinc 223111530 Jan 10 18:27 EVNT.47898824._001195.pool.root.1
[2026-01-10 19:42:26] -rw-r--r--. 1 boinc boinc      6522 Jan 10 18:27 init_data.xml
[2026-01-10 19:42:26] -rw-r--r--. 2 boinc boinc     15847 Jan 10 18:27 start_atlas.sh
[2026-01-10 19:42:26] drwxrwx--x. 2 boinc boinc      4096 Jan 10 18:27 shared
[2026-01-10 19:42:26] -rw-r--r--. 2 boinc boinc    592392 Jan 10 18:27 input.tar.gz
[2026-01-10 19:42:26] -rw-r--r--. 1 boinc boinc         0 Jan 10 18:27 boinc_lockfile
[2026-01-10 19:42:26] -rw-r--r--. 1 boinc boinc      2519 Jan 10 18:27 pandaJob.out
[2026-01-10 19:42:26] -rw-------. 1 boinc boinc    989548 Jan 10 18:27 agis_schedconf.cvmfs.json
[2026-01-10 19:42:26] -rw-------. 1 boinc boinc   1516240 Jan 10 18:27 agis_ddmendpoints.agis.ALL.json
[2026-01-10 19:42:26] drwx------. 5 boinc boinc      4096 Jan 10 18:27 pilot3
[2026-01-10 19:42:26] -rw-------. 1 boinc boinc 220056444 Jan 10 19:40 HITS.47898826._030867.pool.root.1
[2026-01-10 19:42:26] -rw-r--r--. 1 boinc boinc       529 Jan 10 19:41 boinc_task_state.xml
[2026-01-10 19:42:26] -rw-------. 1 boinc boinc      1012 Jan 10 19:41 memory_monitor_summary.json
[2026-01-10 19:42:26] -rw-------. 1 boinc boinc        95 Jan 10 19:41 pilot_heartbeat.json
[2026-01-10 19:42:26] -rw-------. 1 boinc boinc    389596 Jan 10 19:41 log.47898826._030867.job.log.tgz.1
[2026-01-10 19:42:26] -rw-------. 1 boinc boinc      7775 Jan 10 19:41 heartbeat.json
[2026-01-10 19:42:26] -rw-r--r--. 1 boinc boinc      8192 Jan 10 19:42 boinc_mmap_file
[2026-01-10 19:42:26] -rw-r--r--. 1 boinc boinc        27 Jan 10 19:42 wrapper_checkpoint.txt
[2026-01-10 19:42:26] -rw-------. 1 boinc boinc      4822 Jan 10 19:42 pilotlog.txt
[2026-01-10 19:42:26] -rw-------. 1 boinc boinc    662661 Jan 10 19:42 log.47898826._030867.job.log.1
[2026-01-10 19:42:26] -rw-------. 1 boinc boinc       357 Jan 10 19:42 output.list
[2026-01-10 19:42:26] -rw-r--r--. 1 boinc boinc       620 Jan 10 19:42 runtime_log
[2026-01-10 19:42:26] -rw-------. 1 boinc boinc   1075200 Jan 10 19:42 result.tar.gz
[2026-01-10 19:42:26] -rw-------. 1 boinc boinc       662 Jan 10 19:42 vgrNDmMWAy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmezfKDmclSTVn.diag
[2026-01-10 19:42:26] -rw-r--r--. 1 boinc boinc      8864 Jan 10 19:42 runtime_log.err
[2026-01-10 19:42:26] -rw-r--r--. 1 boinc boinc     21792 Jan 10 19:42 stderr.txt
[2026-01-10 19:42:26] HITS file was successfully produced:
[2026-01-10 19:42:26] -rw-------. 1 boinc boinc 220056444 Jan 10 19:40 shared/HITS.pool.root.1
[2026-01-10 19:42:26]  *** Contents of shared directory: ***
[2026-01-10 19:42:26] total 434440
[2026-01-10 19:42:26] -rw-r--r--. 2 boinc boinc 223111530 Jan 10 18:27 ATLAS.root_0
[2026-01-10 19:42:26] -rw-r--r--. 2 boinc boinc     15847 Jan 10 18:27 start_atlas.sh
[2026-01-10 19:42:26] -rw-r--r--. 2 boinc boinc    592392 Jan 10 18:27 input.tar.gz
[2026-01-10 19:42:26] -rw-------. 1 boinc boinc 220056444 Jan 10 19:40 HITS.pool.root.1
[2026-01-10 19:42:26] -rw-------. 1 boinc boinc   1075200 Jan 10 19:42 result.tar.gz
19:42:27 (849554): run_atlas exited; CPU time 49015.030526
19:42:27 (849554): called boinc_finish(0)

</stderr_txt>
]]>

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