Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:08:50 (261082): wrapper (7.7.26015): starting
10:08:50 (261082): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 10:08:50] Arguments: --nthreads 3
[2026-01-10 10:08:50] Threads: 3
[2026-01-10 10:08:50] Checking for CVMFS
[2026-01-10 10:08:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 10:08:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 10:08:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 10:08:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 10:08:51] 2.9.2.0 3607278 3544 87792 154973 3 57 16114165 36864001 0 130560 0 2162968 99.987 137214 7614 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 10:08:51] CVMFS is ok
[2026-01-10 10:08:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 10:08:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 10:08:51] Further information can be found at the LHC@home message board.
[2026-01-10 10:08:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 10:08:51] Checking for apptainer binary...
[2026-01-10 10:08:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 10:08:51] Running /usr/bin/apptainer --version
[2026-01-10 10:08:51] apptainer version 1.4.1-1.1
[2026-01-10 10:08:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 10:08:51] thA312
[2026-01-10 10:08:51] apptainer works
[2026-01-10 10:08:51] Set ATHENA_PROC_NUMBER=3
[2026-01-10 10:08:51] Set ATHENA_CORE_NUMBER=3
[2026-01-10 10:08:51] Starting ATLAS job with PandaID=6963155646
[2026-01-10 10:08:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 12:04:10]  *** The last 200 lines of the pilot log: ***
[2026-01-10 12:04:10] 2026-01-10 11:03:38,267 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 12:04:10] 2026-01-10 11:03:38,267 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 12:04:10] 2026-01-10 11:03:38,268 | INFO     | did not find any defunct processes belonging to 271258
[2026-01-10 12:04:10] 2026-01-10 11:03:38,269 | INFO     | did not find any defunct processes belonging to 271258
[2026-01-10 12:04:10] 2026-01-10 11:03:38,270 | INFO     | ready for new job
[2026-01-10 12:04:10] 2026-01-10 11:03:38,270 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 12:04:10] 2026-01-10 11:03:38,270 | INFO     | ***************************************
[2026-01-10 12:04:10] 2026-01-10 11:03:38,270 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 12:04:10] 2026-01-10 11:03:38,270 | INFO     | ***************************************
[2026-01-10 12:04:10] 2026-01-10 11:03:38,270 | INFO     | 
[2026-01-10 12:04:10] 2026-01-10 11:03:38,271 | INFO     | architecture information:
[2026-01-10 12:04:10] 2026-01-10 11:03:38,271 | INFO     | executing command: cat /etc/os-release
[2026-01-10 12:04:10] 2026-01-10 11:03:38,280 | INFO     | cat /etc/os-release:
[2026-01-10 12:04:10] NAME="CentOS Linux"
[2026-01-10 12:04:10] VERSION="7 (Core)"
[2026-01-10 12:04:10] ID="centos"
[2026-01-10 12:04:10] ID_LIKE="rhel fedora"
[2026-01-10 12:04:10] VERSION_ID="7"
[2026-01-10 12:04:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 12:04:10] ANSI_COLOR="0;31"
[2026-01-10 12:04:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 12:04:10] HOME_URL="https://www.centos.org/"
[2026-01-10 12:04:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 12:04:10] 
[2026-01-10 12:04:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 12:04:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 12:04:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 12:04:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 12:04:10] 
[2026-01-10 12:04:10] 2026-01-10 11:03:38,281 | INFO     | ***************************************
[2026-01-10 12:04:10] 2026-01-10 11:03:38,784 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 12:04:10] 2026-01-10 11:03:38,797 | INFO     | sufficient remaining disk space (344516984832 B)
[2026-01-10 12:04:10] 2026-01-10 11:03:38,798 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 12:04:10] 2026-01-10 11:03:38,798 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 12:04:10] 2026-01-10 11:03:38,798 | INFO     | update_server=False
[2026-01-10 12:04:10] 2026-01-10 11:03:38,798 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 12:04:10] 2026-01-10 11:03:38,798 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:04:10] 2026-01-10 11:03:39,208 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 12:04:10] 2026-01-10 11:03:39,214 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 12:04:10] 2026-01-10 11:03:39,214 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 12:04:10] 2026-01-10 11:03:39,214 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:04:10] 2026-01-10 11:03:39,214 | INFO     | will abort loop
[2026-01-10 12:04:10] 2026-01-10 11:03:39,585 | INFO     | all job control threads have been joined
[2026-01-10 12:04:10] 2026-01-10 11:03:39,774 | INFO     | all data control threads have been joined
[2026-01-10 12:04:10] 2026-01-10 11:03:39,804 | INFO     | [job] retrieve thread has finished
[2026-01-10 12:04:10] 2026-01-10 11:03:39,804 | INFO     | [job] queue monitor thread has finished
[2026-01-10 12:04:10] 2026-01-10 11:03:39,847 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 12:04:10] 2026-01-10 11:03:39,898 | INFO     | [payload] validate_post thread has finished
[2026-01-10 12:04:10] 2026-01-10 11:03:40,046 | INFO     | all payload control threads have been joined
[2026-01-10 12:04:10] 2026-01-10 11:03:40,217 | INFO     | [job] job monitor thread has finished
[2026-01-10 12:04:10] 2026-01-10 11:03:40,590 | INFO     | [job] control thread has finished
[2026-01-10 12:04:10] 2026-01-10 11:03:40,607 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 12:04:10] 2026-01-10 11:03:40,659 | INFO     | [data] copytool_in thread has finished
[2026-01-10 12:04:10] 2026-01-10 11:03:40,780 | INFO     | [data] control thread has finished
[2026-01-10 12:04:10] 2026-01-10 11:03:40,984 | INFO     | [payload] failed_post thread has finished
[2026-01-10 12:04:10] 2026-01-10 11:03:41,051 | INFO     | [payload] control thread has finished
[2026-01-10 12:04:10] 2026-01-10 11:03:41,199 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 12:04:10] 2026-01-10 11:03:41,199 | INFO     | [job] validate thread has finished
[2026-01-10 12:04:10] 2026-01-10 11:03:41,214 | INFO     | [data] copytool_out thread has finished
[2026-01-10 12:04:10] 2026-01-10 11:03:41,731 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 12:04:10] 2026-01-10 11:03:45,738 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 12:04:10] 2026-01-10 11:03:49,722 | INFO     | job.realtimelogging is not enabled
[2026-01-10 12:04:10] 2026-01-10 11:03:50,728 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 12:04:10] 2026-01-10 11:04:04,661 | INFO     | [monitor] cgroup control has ended
[2026-01-10 12:04:10] 2026-01-10 11:04:05,415 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140233263662912)>', '<ExcThread(monitor, started 140232982759168)>']
[2026-01-10 12:04:10] 2026-01-10 11:04:09,581 | INFO     | PID=264806 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 12:04:10] 2026-01-10 11:04:09,582 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 12:04:10] 2026-01-10 11:04:09,582 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 12:04:10] 2026-01-10 11:04:09,582 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 12:04:10] 2026-01-10 11:04:09,582 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 12:04:10] 2026-01-10 11:04:09,582 | INFO     | [monitor] control thread has ended
[2026-01-10 12:04:10] 2026-01-10 11:04:10,441 | INFO     | all workflow threads have been joined
[2026-01-10 12:04:10] 2026-01-10 11:04:10,441 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 12:04:10] 2026-01-10 11:04:10,441 | INFO     | traces error code: 0
[2026-01-10 12:04:10] 2026-01-10 11:04:10,441 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 12:04:10] 2026-01-10 11:04:10,492 [wrapper] ==== pilot stdout END ====
[2026-01-10 12:04:10] 2026-01-10 11:04:10,494 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 12:04:10] 2026-01-10 11:04:10,497 [wrapper] pilotpid: 264806
[2026-01-10 12:04:10] 2026-01-10 11:04:10,499 [wrapper] Pilot exit status: 0
[2026-01-10 12:04:10] 2026-01-10 11:04:10,506 [wrapper] pandaids: 6963155646
[2026-01-10 12:04:10] 2026-01-10 11:04:10,523 [wrapper] cleanup supervisor_pilot  286778 264807
[2026-01-10 12:04:10] 2026-01-10 11:04:10,526 [wrapper] Test setup, not cleaning
[2026-01-10 12:04:10] 2026-01-10 11:04:10,528 [wrapper] apfmon messages muted
[2026-01-10 12:04:10] 2026-01-10 11:04:10,530 [wrapper] ==== wrapper stdout END ====
[2026-01-10 12:04:10] 2026-01-10 11:04:10,532 [wrapper] ==== wrapper stderr END ====
[2026-01-10 12:04:10]  *** Error codes and diagnostics ***
[2026-01-10 12:04:10]     "exeErrorCode": 0,
[2026-01-10 12:04:10]     "exeErrorDiag": "",
[2026-01-10 12:04:10]     "pilotErrorCode": 0,
[2026-01-10 12:04:10]     "pilotErrorDiag": "",
[2026-01-10 12:04:10]  *** Listing of results directory ***
[2026-01-10 12:04:10] total 438904
[2026-01-10 12:04:10] -rw-r--r-- 1 boinc boinc    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-10 12:04:10] -rwx------ 1 boinc boinc     36322 Jan  8 20:09 runpilot2-wrapper.sh
[2026-01-10 12:04:10] -rw-r--r-- 1 boinc boinc      5112 Jan  8 20:11 queuedata.json
[2026-01-10 12:04:10] -rw-r--r-- 1 boinc boinc       100 Jan 10 10:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 12:04:10] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 10:08 run_atlas
[2026-01-10 12:04:10] -rw-r--r-- 1 boinc boinc       105 Jan 10 10:08 job.xml
[2026-01-10 12:04:10] -rw-r--r-- 2 boinc boinc 223111530 Jan 10 10:08 EVNT.47898824._001195.pool.root.1
[2026-01-10 12:04:10] -rw-r--r-- 2 boinc boinc    592396 Jan 10 10:08 input.tar.gz
[2026-01-10 12:04:10] -rw-r--r-- 2 boinc boinc     15847 Jan 10 10:08 start_atlas.sh
[2026-01-10 12:04:10] drwxrwx--x 2 boinc boinc      4096 Jan 10 10:08 shared
[2026-01-10 12:04:10] -rw-r--r-- 1 boinc boinc         0 Jan 10 10:08 boinc_setup_complete
[2026-01-10 12:04:10] -rw-r--r-- 1 boinc boinc      6439 Jan 10 10:08 init_data.xml
[2026-01-10 12:04:10] -rw-r--r-- 1 boinc boinc         0 Jan 10 10:08 boinc_lockfile
[2026-01-10 12:04:10] -rw-r--r-- 1 boinc boinc      2520 Jan 10 10:08 pandaJob.out
[2026-01-10 12:04:10] -rw------- 1 boinc boinc    989548 Jan 10 10:08 agis_schedconf.cvmfs.json
[2026-01-10 12:04:10] -rw------- 1 boinc boinc   1516240 Jan 10 10:08 agis_ddmendpoints.agis.ALL.json
[2026-01-10 12:04:10] drwx------ 5 boinc boinc      4096 Jan 10 10:08 pilot3
[2026-01-10 12:04:10] -rw------- 1 boinc boinc 219860035 Jan 10 12:03 HITS.47898826._030868.pool.root.1
[2026-01-10 12:04:10] -rw-r--r-- 1 boinc boinc       529 Jan 10 12:03 boinc_task_state.xml
[2026-01-10 12:04:10] -rw------- 1 boinc boinc      1020 Jan 10 12:03 memory_monitor_summary.json
[2026-01-10 12:04:10] -rw------- 1 boinc boinc    288397 Jan 10 12:03 log.47898826._030868.job.log.tgz.1
[2026-01-10 12:04:10] -rw------- 1 boinc boinc        95 Jan 10 12:03 pilot_heartbeat.json
[2026-01-10 12:04:10] -rw------- 1 boinc boinc      7757 Jan 10 12:03 heartbeat.json
[2026-01-10 12:04:10] -rw-r--r-- 1 boinc boinc      8192 Jan 10 12:03 boinc_mmap_file
[2026-01-10 12:04:10] -rw-r--r-- 1 boinc boinc        27 Jan 10 12:03 wrapper_checkpoint.txt
[2026-01-10 12:04:10] -rw------- 1 boinc boinc      5009 Jan 10 12:04 pilotlog.txt
[2026-01-10 12:04:10] -rw------- 1 boinc boinc    991419 Jan 10 12:04 log.47898826._030868.job.log.1
[2026-01-10 12:04:10] -rw------- 1 boinc boinc       357 Jan 10 12:04 output.list
[2026-01-10 12:04:10] -rw-r--r-- 1 boinc boinc       620 Jan 10 12:04 runtime_log
[2026-01-10 12:04:10] -rw------- 1 boinc boinc   1300480 Jan 10 12:04 result.tar.gz
[2026-01-10 12:04:10] -rw------- 1 boinc boinc       659 Jan 10 12:04 tTIMDmPZAy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmd6fKDmVZpNFm.diag
[2026-01-10 12:04:10] -rw-r--r-- 1 boinc boinc      8897 Jan 10 12:04 runtime_log.err
[2026-01-10 12:04:10] -rw-r--r-- 1 boinc boinc     10288 Jan 10 12:04 stderr.txt
[2026-01-10 12:04:10] HITS file was successfully produced:
[2026-01-10 12:04:10] -rw------- 1 boinc boinc 219860035 Jan 10 12:03 shared/HITS.pool.root.1
[2026-01-10 12:04:10]  *** Contents of shared directory: ***
[2026-01-10 12:04:10] total 434468
[2026-01-10 12:04:10] -rw-r--r-- 2 boinc boinc 223111530 Jan 10 10:08 ATLAS.root_0
[2026-01-10 12:04:10] -rw-r--r-- 2 boinc boinc    592396 Jan 10 10:08 input.tar.gz
[2026-01-10 12:04:10] -rw-r--r-- 2 boinc boinc     15847 Jan 10 10:08 start_atlas.sh
[2026-01-10 12:04:10] -rw------- 1 boinc boinc 219860035 Jan 10 12:03 HITS.pool.root.1
[2026-01-10 12:04:10] -rw------- 1 boinc boinc   1300480 Jan 10 12:04 result.tar.gz
12:04:12 (261082): run_atlas exited; CPU time 19896.529481
12:04:12 (261082): called boinc_finish(0)

</stderr_txt>
]]>

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