Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:49:05 (555441): wrapper (7.7.26015): starting
13:49:05 (555441): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 13:49:05] Arguments: --nthreads 8
[2026-01-09 13:49:05] Threads: 8
[2026-01-09 13:49:05] Checking for CVMFS
[2026-01-09 13:49:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 13:49:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 13:49:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 13:49:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 13:49:07] 2.13.3.0 12210 22659 134472 154953 3 336 27342144 40960001 34578 16776704 0 72901480 99.802 36320115 47260 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 13:49:07] CVMFS is ok
[2026-01-09 13:49:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 13:49:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 13:49:07] Further information can be found at the LHC@home message board.
[2026-01-09 13:49:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 13:49:07] Checking for apptainer binary...
[2026-01-09 13:49:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 13:49:07] Running /usr/bin/apptainer --version
[2026-01-09 13:49:07] apptainer version 1.4.5-2.el9
[2026-01-09 13:49:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 13:49:08] c-208-37.aglt2.org
[2026-01-09 13:49:08] apptainer works
[2026-01-09 13:49:08] Set ATHENA_PROC_NUMBER=8
[2026-01-09 13:49:08] Set ATHENA_CORE_NUMBER=8
[2026-01-09 13:49:08] Starting ATLAS job with PandaID=6962919922
[2026-01-09 13:49:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:00:07 (555441): BOINC client no longer exists - exiting
15:00:07 (555441): timer handler: client dead, exiting
15:00:54 (887825): wrapper (7.7.26015): starting
15:00:54 (887825): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 15:00:54] Arguments: --nthreads 8
[2026-01-09 15:00:54] Threads: 8
[2026-01-09 15:00:54] This job has been restarted, cleaning up previous attempt
[2026-01-09 15:00:54] Checking for CVMFS
[2026-01-09 15:00:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 15:00:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 15:00:54] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 15:00:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 15:00:55] 2.13.3.0 12210 22731 130752 154955 3 305 29433524 40960000 27462 16776704 0 73177691 99.803 36333352 47260 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 15:00:55] CVMFS is ok
[2026-01-09 15:00:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 15:00:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 15:00:55] Further information can be found at the LHC@home message board.
[2026-01-09 15:00:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 15:00:55] Checking for apptainer binary...
[2026-01-09 15:00:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 15:00:55] Running /usr/bin/apptainer --version
[2026-01-09 15:00:55] apptainer version 1.4.5-2.el9
[2026-01-09 15:00:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 15:00:55] c-208-37.aglt2.org
[2026-01-09 15:00:55] apptainer works
[2026-01-09 15:00:55] Set ATHENA_PROC_NUMBER=8
[2026-01-09 15:00:55] Set ATHENA_CORE_NUMBER=8
[2026-01-09 15:00:55] Starting ATLAS job with PandaID=6962919922
[2026-01-09 15:00:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 19:36:24]  *** The last 200 lines of the pilot log: ***
[2026-01-09 19:36:24] 2026-01-10 00:10:56,717 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 19:36:24] 2026-01-10 00:10:56,812 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 19:36:24] 2026-01-10 00:10:56,820 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3787.6342109375
[2026-01-09 19:36:24] 2026-01-10 00:10:56,858 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6962919922/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 19:36:24] 2026-01-10 00:10:56,858 | INFO     | extracted standard info from prmon json
[2026-01-09 19:36:24] 2026-01-10 00:10:56,859 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 19:36:24] 2026-01-10 00:10:56,859 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 19:36:24] 2026-01-10 00:10:56,859 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 19:36:24] 2026-01-10 00:10:56,859 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 19:36:24] 2026-01-10 00:10:56,861 | INFO     | fitting pss+swap vs Time
[2026-01-09 19:36:24] 2026-01-10 00:10:56,861 | INFO     | sum of square deviations: 4559994257.41224
[2026-01-09 19:36:24] 2026-01-10 00:10:56,868 | INFO     | sum of deviations: 44737822352.849
[2026-01-09 19:36:24] 2026-01-10 00:10:56,868 | INFO     | mean x: 1767996356.0489795
[2026-01-09 19:36:24] 2026-01-10 00:10:56,868 | INFO     | mean y: 2459609.595918367
[2026-01-09 19:36:24] 2026-01-10 00:10:56,868 | INFO     | intersect: -17343243571.6818
[2026-01-09 19:36:24] 2026-01-10 00:10:56,869 | INFO     | chi2: 2.0176404570728073
[2026-01-09 19:36:24] 2026-01-10 00:10:56,869 | INFO     | sum of square deviations: 4286467207.399989
[2026-01-09 19:36:24] 2026-01-10 00:10:56,870 | INFO     | sum of deviations: 59496458276.55003
[2026-01-09 19:36:24] 2026-01-10 00:10:56,870 | INFO     | mean x: 1767996203.55
[2026-01-09 19:36:24] 2026-01-10 00:10:56,870 | INFO     | mean y: 2467688.495833333
[2026-01-09 19:36:24] 2026-01-10 00:10:56,870 | INFO     | intersect: -24537440648.14474
[2026-01-09 19:36:24] 2026-01-10 00:10:56,870 | INFO     | chi2: 1.2329243850933276
[2026-01-09 19:36:24] 2026-01-10 00:10:56,870 | INFO     | current chi2=1.2329243850933276 (change=38.892760562401975 %)
[2026-01-09 19:36:24] 2026-01-10 00:10:56,870 | INFO     | sum of square deviations: 4024103157.3872323
[2026-01-09 19:36:24] 2026-01-10 00:10:56,871 | INFO     | sum of deviations: 57973494133.05108
[2026-01-09 19:36:24] 2026-01-10 00:10:56,871 | INFO     | mean x: 1767996051.0510638
[2026-01-09 19:36:24] 2026-01-10 00:10:56,871 | INFO     | mean y: 2466802.995744681
[2026-01-09 19:36:24] 2026-01-10 00:10:56,871 | INFO     | intersect: -25468279021.377075
[2026-01-09 19:36:24] 2026-01-10 00:10:56,871 | INFO     | chi2: 1.2321521321018096
[2026-01-09 19:36:24] 2026-01-10 00:10:56,872 | INFO     | current chi2=1.2321521321018096 (change=0.0626358762025374 %)
[2026-01-09 19:36:24] 2026-01-10 00:10:56,872 | INFO     | right removable region: 234
[2026-01-09 19:36:24] 2026-01-10 00:10:56,872 | INFO     | sum of square deviations: 4286459887.399989
[2026-01-09 19:36:24] 2026-01-10 00:10:56,883 | INFO     | sum of deviations: 12972061070.05001
[2026-01-09 19:36:24] 2026-01-10 00:10:56,883 | INFO     | mean x: 1767996508.55
[2026-01-09 19:36:24] 2026-01-10 00:10:56,883 | INFO     | mean y: 2477159.620833333
[2026-01-09 19:36:24] 2026-01-10 00:10:56,883 | INFO     | intersect: -5347989025.298271
[2026-01-09 19:36:24] 2026-01-10 00:10:56,883 | INFO     | chi2: 0.8788731210246916
[2026-01-09 19:36:24] 2026-01-10 00:10:56,883 | INFO     | current chi2=0.8788731210246916 (change=56.440548267962434 %)
[2026-01-09 19:36:24] 2026-01-10 00:10:56,883 | INFO     | sum of square deviations: 4024088517.3872323
[2026-01-09 19:36:24] 2026-01-10 00:10:56,884 | INFO     | sum of deviations: 2659839369.446804
[2026-01-09 19:36:24] 2026-01-10 00:10:56,884 | INFO     | mean x: 1767996661.0510638
[2026-01-09 19:36:24] 2026-01-10 00:10:56,884 | INFO     | mean y: 2483154.212765957
[2026-01-09 19:36:24] 2026-01-10 00:10:56,884 | INFO     | intersect: -1166126110.6667802
[2026-01-09 19:36:24] 2026-01-10 00:10:56,884 | INFO     | chi2: 0.8246724641900041
[2026-01-09 19:36:24] 2026-01-10 00:10:56,884 | INFO     | current chi2=0.8246724641900041 (change=6.167062746383025 %)
[2026-01-09 19:36:24] 2026-01-10 00:10:56,884 | INFO     | left removable region: 20
[2026-01-09 19:36:24] 2026-01-10 00:10:56,885 | INFO     | sum of square deviations: 3038837893.121509
[2026-01-09 19:36:24] 2026-01-10 00:10:56,885 | INFO     | sum of deviations: 9534694453.728971
[2026-01-09 19:36:24] 2026-01-10 00:10:56,885 | INFO     | mean x: 1767996630.542056
[2026-01-09 19:36:24] 2026-01-10 00:10:56,885 | INFO     | mean y: 2496597.2523364485
[2026-01-09 19:36:24] 2026-01-10 00:10:56,885 | INFO     | intersect: -5544790971.327027
[2026-01-09 19:36:24] 2026-01-10 00:10:56,885 | INFO     | chi2: 0.001824222437715979
[2026-01-09 19:36:24] 2026-01-10 00:10:56,886 | INFO     | current memory leak: 3.14 B/s (using 214 data points, chi2=0.00)
[2026-01-09 19:36:24] 2026-01-10 00:10:56,894 | INFO     | could have reported an average CPU frequency of 3788 MHz (12 samples)
[2026-01-09 19:36:24] 2026-01-10 00:10:56,894 | INFO     | ..............................
[2026-01-09 19:36:24] 2026-01-10 00:10:56,894 | INFO     | . Timing measurements:
[2026-01-09 19:36:24] 2026-01-10 00:10:56,894 | INFO     | . get job = 0 s
[2026-01-09 19:36:24] 2026-01-10 00:10:56,894 | INFO     | . initial setup = 1 s
[2026-01-09 19:36:24] 2026-01-10 00:10:56,894 | INFO     | . payload setup = 10 s
[2026-01-09 19:36:24] 2026-01-10 00:10:56,894 | INFO     | . stage-in = 0 s
[2026-01-09 19:36:24] 2026-01-10 00:10:56,894 | INFO     | . payload execution = 14904 s
[2026-01-09 19:36:24] 2026-01-10 00:10:56,894 | INFO     | . stage-out = 4 s
[2026-01-09 19:36:24] 2026-01-10 00:10:56,894 | INFO     | . log creation = 0 s
[2026-01-09 19:36:24] 2026-01-10 00:10:56,894 | INFO     | ..............................
[2026-01-09 19:36:24] 2026-01-10 00:10:57,167 | INFO     | 
[2026-01-09 19:36:24] 2026-01-10 00:10:57,167 | INFO     | job summary report
[2026-01-09 19:36:24] 2026-01-10 00:10:57,167 | INFO     | --------------------------------------------------
[2026-01-09 19:36:24] 2026-01-10 00:10:57,167 | INFO     | PanDA job id: 6962919922
[2026-01-09 19:36:24] 2026-01-10 00:10:57,167 | INFO     | task id: 47898826
[2026-01-09 19:36:24] 2026-01-10 00:10:57,167 | INFO     | errors: (none)
[2026-01-09 19:36:24] 2026-01-10 00:10:57,167 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 19:36:24] 2026-01-10 00:10:57,167 | INFO     | pilot state: finished 
[2026-01-09 19:36:24] 2026-01-10 00:10:57,167 | INFO     | transexitcode: 0
[2026-01-09 19:36:24] 2026-01-10 00:10:57,167 | INFO     | exeerrorcode: 0
[2026-01-09 19:36:24] 2026-01-10 00:10:57,167 | INFO     | exeerrordiag: 
[2026-01-09 19:36:24] 2026-01-10 00:10:57,167 | INFO     | exitcode: 0
[2026-01-09 19:36:24] 2026-01-10 00:10:57,167 | INFO     | exitmsg: OK
[2026-01-09 19:36:24] 2026-01-10 00:10:57,168 | INFO     | cpuconsumptiontime: 32094 s
[2026-01-09 19:36:24] 2026-01-10 00:10:57,168 | INFO     | nevents: 400
[2026-01-09 19:36:24] 2026-01-10 00:10:57,168 | INFO     | neventsw: 0
[2026-01-09 19:36:24] 2026-01-10 00:10:57,168 | INFO     | pid: 968625
[2026-01-09 19:36:24] 2026-01-10 00:10:57,168 | INFO     | pgrp: 968625
[2026-01-09 19:36:24] 2026-01-10 00:10:57,168 | INFO     | corecount: 8
[2026-01-09 19:36:24] 2026-01-10 00:10:57,168 | INFO     | event service: False
[2026-01-09 19:36:24] 2026-01-10 00:10:57,168 | INFO     | sizes: {0: 2283969, 7: 2284231, 11: 2284259, 14919: 2315347, 14925: 2324345, 14926: 2324401, 14962: 2324723}
[2026-01-09 19:36:24] 2026-01-10 00:10:57,168 | INFO     | --------------------------------------------------
[2026-01-09 19:36:24] 2026-01-10 00:10:57,168 | INFO     | 
[2026-01-09 19:36:24] 2026-01-10 00:10:57,168 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2026-01-09 19:36:24] 2026-01-10 00:10:57,214 | INFO     | time since job start (14981s) is within the limit (174528.0s)
[2026-01-09 19:36:24] 2026-01-10 00:10:57,277 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 19:36:24] 2026-01-10 00:10:57,277 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 19:36:24] 2026-01-10 00:10:57,277 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 19:36:24] 2026-01-10 00:10:57,277 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 19:36:24] 2026-01-10 00:10:57,277 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 19:36:24] 2026-01-10 00:10:57,277 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 19:36:24] 2026-01-10 00:10:57,277 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 19:36:24] 2026-01-10 00:10:57,277 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 19:36:24] 2026-01-10 00:10:57,278 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 19:36:24] 2026-01-10 00:10:57,278 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 19:36:24] 2026-01-10 00:10:57,278 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 19:36:24] 2026-01-10 00:10:57,278 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 19:36:24] 2026-01-10 00:10:57,278 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 19:36:24] 2026-01-10 00:10:57,278 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 19:36:24] 2026-01-10 00:10:57,278 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 19:36:24] 2026-01-10 00:10:57,278 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 19:36:24] 2026-01-10 00:10:57,278 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 19:36:24] 2026-01-10 00:10:57,278 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 19:36:24] 2026-01-10 00:10:57,278 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 19:36:24] 2026-01-10 00:10:57,278 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 19:36:24] 2026-01-10 00:10:57,278 | INFO     | job 6962919922 has completed (purged errors)
[2026-01-09 19:36:24] 2026-01-10 00:10:57,278 | INFO     | overall cleanup function is called
[2026-01-09 19:36:24] 2026-01-10 00:10:58,284 | INFO     | --- collectZombieJob: --- 10, [968625]
[2026-01-09 19:36:24] 2026-01-10 00:10:58,284 | INFO     | zombie collector waiting for pid 968625
[2026-01-09 19:36:24] 2026-01-10 00:10:58,284 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 19:36:24] 2026-01-10 00:10:58,284 | INFO     | collected zombie processes
[2026-01-09 19:36:24] 2026-01-10 00:10:58,285 | INFO     | will attempt to kill all subprocesses of pid=968625
[2026-01-09 19:36:24] 2026-01-10 00:10:59,445 | INFO     | process IDs to be killed: [968625] (in reverse order)
[2026-01-09 19:36:24] 2026-01-10 00:10:59,724 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 19:36:24] 2026-01-10 00:10:59,724 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 19:36:24] 2026-01-10 00:10:59,810 | INFO     | did not find any defunct processes belonging to 968625
[2026-01-09 19:36:24] 2026-01-10 00:10:59,858 | INFO     | did not find any defunct processes belonging to 968625
[2026-01-09 19:36:24] 2026-01-10 00:10:59,858 | INFO     | ready for new job
[2026-01-09 19:36:24] 2026-01-10 00:10:59,858 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 19:36:24] 2026-01-10 00:10:59,860 | INFO     | ***************************************
[2026-01-09 19:36:24] 2026-01-10 00:10:59,860 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 19:36:24] 2026-01-10 00:10:59,860 | INFO     | ***************************************
[2026-01-09 19:36:24] 2026-01-10 00:10:59,860 | INFO     | 
[2026-01-09 19:36:24] 2026-01-10 00:10:59,864 | INFO     | architecture information:
[2026-01-09 19:36:24] 2026-01-10 00:10:59,864 | INFO     | executing command: cat /etc/os-release
[2026-01-09 19:36:24] 2026-01-10 00:10:59,951 | INFO     | cat /etc/os-release:
[2026-01-09 19:36:24] NAME="CentOS Linux"
[2026-01-09 19:36:24] VERSION="7 (Core)"
[2026-01-09 19:36:24] ID="centos"
[2026-01-09 19:36:24] ID_LIKE="rhel fedora"
[2026-01-09 19:36:24] VERSION_ID="7"
[2026-01-09 19:36:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 19:36:24] ANSI_COLOR="0;31"
[2026-01-09 19:36:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 19:36:24] HOME_URL="https://www.centos.org/"
[2026-01-09 19:36:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 19:36:24] 
[2026-01-09 19:36:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 19:36:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 19:36:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 19:36:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 19:36:24] 
[2026-01-09 19:36:24] 2026-01-10 00:10:59,951 | INFO     | ***************************************
[2026-01-09 19:36:24] 2026-01-10 00:11:00,455 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2026-01-09 19:36:24] 2026-01-10 00:11:00,503 | INFO     | sufficient remaining disk space (167780548608 B)
[2026-01-09 19:36:24] 2026-01-10 00:11:00,504 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 19:36:24] 2026-01-10 00:11:00,504 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 19:36:24] 2026-01-10 00:11:00,504 | INFO     | update_server=False
[2026-01-09 19:36:24] 2026-01-10 00:11:00,504 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 19:36:24] 2026-01-10 00:11:00,504 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:36:24] 2026-01-10 00:11:00,504 | INFO     | aborting loop
[2026-01-09 19:36:24] 2026-01-10 00:11:00,748 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 19:36:24] 2026-01-10 00:11:01,156 | INFO     | all data control threads have been joined
[2026-01-09 19:36:24] 2026-01-10 00:11:01,511 | INFO     | [job] retrieve thread has finished
[2026-01-09 19:36:24] 2026-01-10 00:11:01,511 | INFO     | [job] job monitor thread has finished
[2026-01-09 19:36:24] 2026-01-10 00:11:01,560 | INFO     | all job control threads have been joined
[2026-01-09 19:36:24] 2026-01-10 00:11:01,910 | INFO     | all payload control threads have been joined
[2026-01-09 19:36:24] 2026-01-10 00:11:02,017 | INFO     | [payload] validate_post thread has finished
[2026-01-09 19:36:24] 2026-01-10 00:11:02,110 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:36:24] 2026-01-10 00:11:02,162 | INFO     | [data] control thread has finished
[2026-01-09 19:36:24] 2026-01-10 00:11:02,236 | INFO     | [data] copytool_in thread has finished
[2026-01-09 19:36:24] 2026-01-10 00:11:02,237 | INFO     | [job] validate thread has finished
[2026-01-09 19:36:24] 2026-01-10 00:11:02,268 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 19:36:24] 2026-01-10 00:11:02,581 | INFO     | [job] control thread has finished
[2026-01-09 19:36:24] 2026-01-10 00:11:02,754 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 19:36:24] 2026-01-10 00:11:02,755 | INFO     | [data] copytool_out thread has finished
[2026-01-09 19:36:24] 2026-01-10 00:11:02,757 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 19:36:24] 2026-01-10 00:11:02,884 | INFO     | [payload] failed_post thread has finished
[2026-01-09 19:36:24] 2026-01-10 00:11:02,896 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 19:36:24] 2026-01-10 00:11:02,918 | INFO     | [payload] control thread has finished
[2026-01-09 19:36:24] 2026-01-10 00:11:02,922 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 19:36:24] 2026-01-10 00:11:03,116 | INFO     | [job] queue monitor thread has finished
[2026-01-09 19:36:24] 2026-01-10 00:11:06,922 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 19:36:24] 2026-01-10 00:11:31,564 | INFO     | PID=915438 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 19:36:24] 2026-01-10 00:11:31,564 | INFO     | .. there are 33 such processes running
[2026-01-09 19:36:24] 2026-01-10 00:11:31,564 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 19:36:24] 2026-01-10 00:11:31,564 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 19:36:24] 2026-01-10 00:11:31,565 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 19:36:24] 2026-01-10 00:11:41,766 | INFO     | [monitor] cgroup control has ended
[2026-01-09 19:36:24] 2026-01-10 00:11:43,347 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140361743255360)>', '<ExcThread(monitor, started 140361385101056)>']
[2026-01-09 19:36:24] 2026-01-10 00:11:43,683 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 19:36:24] 2026-01-10 00:11:43,683 | INFO     | [monitor] control thread has ended
[2026-01-09 19:36:24] 2026-01-10 00:11:48,373 | INFO     | all workflow threads have been joined
[2026-01-09 19:36:24] 2026-01-10 00:11:48,373 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 19:36:24] 2026-01-10 00:11:48,373 | INFO     | traces error code: 0
[2026-01-09 19:36:24] 2026-01-10 00:11:48,373 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 19:36:24] 2026-01-10 00:11:49,185 [wrapper] ==== pilot stdout END ====
[2026-01-09 19:36:24] 2026-01-10 00:11:49,241 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 19:36:24] 2026-01-10 00:11:49,275 [wrapper] pilotpid: 915438
[2026-01-09 19:36:24] 2026-01-10 00:11:49,319 [wrapper] Pilot exit status: 0
[2026-01-09 19:36:24] 2026-01-10 00:11:49,453 [wrapper] pandaids: 6962919922 6962919922
[2026-01-09 19:36:24] 2026-01-10 00:11:49,932 [wrapper] cleanup supervisor_pilot 2510386 915439
[2026-01-09 19:36:24] 2026-01-10 00:11:49,959 [wrapper] Test setup, not cleaning
[2026-01-09 19:36:24] 2026-01-10 00:11:49,992 [wrapper] apfmon messages muted
[2026-01-09 19:36:24] 2026-01-10 00:11:50,040 [wrapper] ==== wrapper stdout END ====
[2026-01-09 19:36:24] 2026-01-10 00:11:50,054 [wrapper] ==== wrapper stderr END ====
[2026-01-09 19:36:24]  *** Error codes and diagnostics ***
[2026-01-09 19:36:24]     "exeErrorCode": 0,
[2026-01-09 19:36:24]     "exeErrorDiag": "",
[2026-01-09 19:36:24]     "pilotErrorCode": 0,
[2026-01-09 19:36:24]     "pilotErrorDiag": "",
[2026-01-09 19:36:24]  *** Listing of results directory ***
[2026-01-09 19:36:24] total 660464
[2026-01-09 19:36:24] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 19:36:24] -rwx------. 1 boincer umatlas     36322 Jan  8 03:07 runpilot2-wrapper.sh
[2026-01-09 19:36:24] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 03:11 queuedata.json
[2026-01-09 19:36:24] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 03:11 pilot3.tar.gz
[2026-01-09 19:36:24] -rw-r--r--. 1 boincer umatlas       100 Jan  9 13:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 19:36:24] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 13:49 run_atlas
[2026-01-09 19:36:24] -rw-r--r--. 1 boincer umatlas       105 Jan  9 13:49 job.xml
[2026-01-09 19:36:24] -rw-r--r--. 3 boincer umatlas 223935513 Jan  9 13:49 EVNT.47898824._000819.pool.root.1
[2026-01-09 19:36:24] -rw-r--r--. 3 boincer umatlas 223935513 Jan  9 13:49 ATLAS.root_0
[2026-01-09 19:36:24] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 13:49 start_atlas.sh
[2026-01-09 19:36:24] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 13:49 shared
[2026-01-09 19:36:24] -rw-r--r--. 2 boincer umatlas    592401 Jan  9 13:49 input.tar.gz
[2026-01-09 19:36:24] -rw-r--r--. 1 boincer umatlas         0 Jan  9 13:49 boinc_lockfile
[2026-01-09 19:36:24] -rw-r--r--. 1 boincer umatlas      2519 Jan  9 15:00 pandaJob.out
[2026-01-09 19:36:24] -rw-------. 1 boincer umatlas        57 Jan  9 15:00 setup.sh.local
[2026-01-09 19:36:24] -rw-------. 1 boincer umatlas    989364 Jan  9 15:01 agis_schedconf.cvmfs.json
[2026-01-09 19:36:24] -rw-------. 1 boincer umatlas 219712784 Jan  9 19:08 HITS.47898826._021656.pool.root.1
[2026-01-09 19:36:24] -rw-r--r--. 1 boincer umatlas       530 Jan  9 19:09 boinc_task_state.xml
[2026-01-09 19:36:24] -rw-------. 1 boincer umatlas      1059 Jan  9 19:10 memory_monitor_summary.json
[2026-01-09 19:36:24] -rw-------. 1 boincer umatlas   1516240 Jan  9 19:10 agis_ddmendpoints.agis.ALL.json
[2026-01-09 19:36:24] -rw-------. 1 boincer umatlas    463574 Jan  9 19:10 log.47898826._021656.job.log.tgz.1
[2026-01-09 19:36:24] -rw-------. 1 boincer umatlas      7825 Jan  9 19:10 heartbeat.json
[2026-01-09 19:36:24] -rw-------. 1 boincer umatlas        96 Jan  9 19:11 pilot_heartbeat.json
[2026-01-09 19:36:24] -rw-------. 1 boincer umatlas      4824 Jan  9 19:11 pilotlog.txt
[2026-01-09 19:36:24] -rw-------. 1 boincer umatlas   1942819 Jan  9 19:11 log.47898826._021656.job.log.1
[2026-01-09 19:36:24] -rw-------. 1 boincer umatlas       357 Jan  9 19:11 output.list
[2026-01-09 19:36:24] -rw-r--r--. 1 boincer umatlas       620 Jan  9 19:11 runtime_log
[2026-01-09 19:36:24] -rw-------. 1 boincer umatlas   2426880 Jan  9 19:11 result.tar.gz
[2026-01-09 19:36:24] -rw-------. 1 boincer umatlas       785 Jan  9 19:11 SiNMDmXE0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEwjKDmxFyxtn.diag
[2026-01-09 19:36:24] -rw-r--r--. 1 boincer umatlas      9428 Jan  9 19:11 runtime_log.err
[2026-01-09 19:36:24] -rw-r--r--. 1 boincer umatlas        28 Jan  9 19:36 wrapper_checkpoint.txt
[2026-01-09 19:36:24] -rw-r--r--. 1 boincer umatlas      7185 Jan  9 19:36 init_data.xml
[2026-01-09 19:36:24] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 19:36 boinc_mmap_file
[2026-01-09 19:36:24] -rw-r--r--. 1 boincer umatlas     23440 Jan  9 19:36 stderr.txt
[2026-01-09 19:36:24] HITS file was successfully produced:
[2026-01-09 19:36:24] -rw-------. 1 boincer umatlas 219712784 Jan  9 19:08 shared/HITS.pool.root.1
[2026-01-09 19:36:24]  *** Contents of shared directory: ***
[2026-01-09 19:36:24] total 436224
[2026-01-09 19:36:24] -rw-r--r--. 3 boincer umatlas 223935513 Jan  9 13:49 ATLAS.root_0
[2026-01-09 19:36:24] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 13:49 start_atlas.sh
[2026-01-09 19:36:24] -rw-r--r--. 2 boincer umatlas    592401 Jan  9 13:49 input.tar.gz
[2026-01-09 19:36:24] -rw-------. 1 boincer umatlas 219712784 Jan  9 19:08 HITS.pool.root.1
[2026-01-09 19:36:24] -rw-------. 1 boincer umatlas   2426880 Jan  9 19:11 result.tar.gz
19:36:26 (887825): run_atlas exited; CPU time 32604.419560
19:36:26 (887825): called boinc_finish(0)

</stderr_txt>
]]>

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