Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:18:51 (3850408): wrapper (7.7.26015): starting
07:18:51 (3850408): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 07:18:51] Arguments: --nthreads 3
[2026-01-10 07:18:51] Threads: 3
[2026-01-10 07:18:51] Checking for CVMFS
[2026-01-10 07:18:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 07:18:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 07:18:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 07:18:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 07:18:51] 2.9.2.0 2993219 3445 82528 154970 1 56 22151874 36864001 0 130560 0 2218022 99.988 127757 5990 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 07:18:51] CVMFS is ok
[2026-01-10 07:18:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 07:18:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 07:18:51] Further information can be found at the LHC@home message board.
[2026-01-10 07:18:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 07:18:51] Checking for apptainer binary...
[2026-01-10 07:18:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 07:18:51] Running /usr/bin/apptainer --version
[2026-01-10 07:18:51] apptainer version 1.4.1-1.1
[2026-01-10 07:18:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 07:18:51] magicA161
[2026-01-10 07:18:51] apptainer works
[2026-01-10 07:18:51] Set ATHENA_PROC_NUMBER=3
[2026-01-10 07:18:51] Set ATHENA_CORE_NUMBER=3
[2026-01-10 07:18:51] Starting ATLAS job with PandaID=6963076669
[2026-01-10 07:18:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 09:14:10]  *** The last 200 lines of the pilot log: ***
[2026-01-10 09:14:10] 2026-01-10 08:13:17,626 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 09:14:10] 2026-01-10 08:13:17,626 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 09:14:10] 2026-01-10 08:13:17,626 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 09:14:10] 2026-01-10 08:13:17,626 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 09:14:10] 2026-01-10 08:13:17,626 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 09:14:10] 2026-01-10 08:13:17,626 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 09:14:10] 2026-01-10 08:13:17,626 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 09:14:10] 2026-01-10 08:13:17,626 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 09:14:10] 2026-01-10 08:13:17,627 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 09:14:10] 2026-01-10 08:13:17,627 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 09:14:10] 2026-01-10 08:13:17,627 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 09:14:10] 2026-01-10 08:13:17,627 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 09:14:10] 2026-01-10 08:13:17,627 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 09:14:10] 2026-01-10 08:13:17,627 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 09:14:10] 2026-01-10 08:13:17,627 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 09:14:10] 2026-01-10 08:13:17,627 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 09:14:10] 2026-01-10 08:13:17,627 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 09:14:10] 2026-01-10 08:13:17,627 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 09:14:10] 2026-01-10 08:13:17,627 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 09:14:10] 2026-01-10 08:13:17,627 | INFO     | job 6963076669 has completed (purged errors)
[2026-01-10 09:14:10] 2026-01-10 08:13:17,627 | INFO     | overall cleanup function is called
[2026-01-10 09:14:10] 2026-01-10 08:13:18,631 | INFO     | --- collectZombieJob: --- 10, [3860568]
[2026-01-10 09:14:10] 2026-01-10 08:13:18,631 | INFO     | zombie collector waiting for pid 3860568
[2026-01-10 09:14:10] 2026-01-10 08:13:18,631 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 09:14:10] 2026-01-10 08:13:18,631 | INFO     | collected zombie processes
[2026-01-10 09:14:10] 2026-01-10 08:13:18,631 | INFO     | will attempt to kill all subprocesses of pid=3860568
[2026-01-10 09:14:10] 2026-01-10 08:13:18,673 | INFO     | process IDs to be killed: [3860568] (in reverse order)
[2026-01-10 09:14:10] 2026-01-10 08:13:18,696 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 09:14:10] 2026-01-10 08:13:18,697 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 09:14:10] 2026-01-10 08:13:18,698 | INFO     | did not find any defunct processes belonging to 3860568
[2026-01-10 09:14:10] 2026-01-10 08:13:18,699 | INFO     | did not find any defunct processes belonging to 3860568
[2026-01-10 09:14:10] 2026-01-10 08:13:18,699 | INFO     | ready for new job
[2026-01-10 09:14:10] 2026-01-10 08:13:18,699 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 09:14:10] 2026-01-10 08:13:18,700 | INFO     | ***************************************
[2026-01-10 09:14:10] 2026-01-10 08:13:18,700 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 09:14:10] 2026-01-10 08:13:18,700 | INFO     | ***************************************
[2026-01-10 09:14:10] 2026-01-10 08:13:18,700 | INFO     | 
[2026-01-10 09:14:10] 2026-01-10 08:13:18,700 | INFO     | architecture information:
[2026-01-10 09:14:10] 2026-01-10 08:13:18,700 | INFO     | executing command: cat /etc/os-release
[2026-01-10 09:14:10] 2026-01-10 08:13:18,708 | INFO     | cat /etc/os-release:
[2026-01-10 09:14:10] NAME="CentOS Linux"
[2026-01-10 09:14:10] VERSION="7 (Core)"
[2026-01-10 09:14:10] ID="centos"
[2026-01-10 09:14:10] ID_LIKE="rhel fedora"
[2026-01-10 09:14:10] VERSION_ID="7"
[2026-01-10 09:14:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 09:14:10] ANSI_COLOR="0;31"
[2026-01-10 09:14:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 09:14:10] HOME_URL="https://www.centos.org/"
[2026-01-10 09:14:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 09:14:10] 
[2026-01-10 09:14:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 09:14:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 09:14:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 09:14:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 09:14:10] 
[2026-01-10 09:14:10] 2026-01-10 08:13:18,708 | INFO     | ***************************************
[2026-01-10 09:14:10] 2026-01-10 08:13:19,212 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 09:14:10] 2026-01-10 08:13:19,224 | INFO     | sufficient remaining disk space (383570149376 B)
[2026-01-10 09:14:10] 2026-01-10 08:13:19,224 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 09:14:10] 2026-01-10 08:13:19,224 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 09:14:10] 2026-01-10 08:13:19,224 | INFO     | update_server=False
[2026-01-10 09:14:10] 2026-01-10 08:13:19,224 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 09:14:10] 2026-01-10 08:13:19,224 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:14:10] 2026-01-10 08:13:19,224 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:14:10] 2026-01-10 08:13:19,224 | INFO     | aborting loop
[2026-01-10 09:14:10] 2026-01-10 08:13:19,225 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 09:14:10] 2026-01-10 08:13:19,316 | INFO     | all payload control threads have been joined
[2026-01-10 09:14:10] 2026-01-10 08:13:19,364 | INFO     | all job control threads have been joined
[2026-01-10 09:14:10] 2026-01-10 08:13:19,819 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 09:14:10] 2026-01-10 08:13:20,187 | INFO     | all data control threads have been joined
[2026-01-10 09:14:10] 2026-01-10 08:13:20,230 | INFO     | [job] retrieve thread has finished
[2026-01-10 09:14:10] 2026-01-10 08:13:20,230 | INFO     | [job] job monitor thread has finished
[2026-01-10 09:14:10] 2026-01-10 08:13:20,230 | INFO     | [job] queue monitor thread has finished
[2026-01-10 09:14:10] 2026-01-10 08:13:20,231 | INFO     | [data] copytool_in thread has finished
[2026-01-10 09:14:10] 2026-01-10 08:13:20,322 | INFO     | [payload] control thread has finished
[2026-01-10 09:14:10] 2026-01-10 08:13:20,370 | INFO     | [job] control thread has finished
[2026-01-10 09:14:10] 2026-01-10 08:13:20,702 | INFO     | [payload] failed_post thread has finished
[2026-01-10 09:14:10] 2026-01-10 08:13:20,834 | INFO     | [job] validate thread has finished
[2026-01-10 09:14:10] 2026-01-10 08:13:20,834 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 09:14:10] 2026-01-10 08:13:20,844 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 09:14:10] 2026-01-10 08:13:21,192 | INFO     | [data] control thread has finished
[2026-01-10 09:14:10] 2026-01-10 08:13:21,231 | INFO     | [payload] validate_post thread has finished
[2026-01-10 09:14:10] 2026-01-10 08:13:21,662 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 09:14:10] 2026-01-10 08:13:21,823 | INFO     | [data] copytool_out thread has finished
[2026-01-10 09:14:10] 2026-01-10 08:13:23,231 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 09:14:10] 2026-01-10 08:13:29,839 | INFO     | job.realtimelogging is not enabled
[2026-01-10 09:14:10] 2026-01-10 08:13:30,844 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 09:14:10] 2026-01-10 08:13:49,625 | INFO     | PID=3854127 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 09:14:10] 2026-01-10 08:13:49,626 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 09:14:10] 2026-01-10 08:13:49,626 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 09:14:10] 2026-01-10 08:13:49,626 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 09:14:10] 2026-01-10 08:14:05,211 | INFO     | [monitor] cgroup control has ended
[2026-01-10 09:14:10] 2026-01-10 08:14:05,647 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140528837691200)>', '<ExcThread(monitor, started 140528326776576)>']
[2026-01-10 09:14:10] 2026-01-10 08:14:05,710 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 09:14:10] 2026-01-10 08:14:05,711 | INFO     | [monitor] control thread has ended
[2026-01-10 09:14:10] 2026-01-10 08:14:10,671 | INFO     | all workflow threads have been joined
[2026-01-10 09:14:10] 2026-01-10 08:14:10,671 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 09:14:10] 2026-01-10 08:14:10,671 | INFO     | traces error code: 0
[2026-01-10 09:14:10] 2026-01-10 08:14:10,671 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 09:14:10] 2026-01-10 08:14:10,720 [wrapper] ==== pilot stdout END ====
[2026-01-10 09:14:10] 2026-01-10 08:14:10,722 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 09:14:10] 2026-01-10 08:14:10,724 [wrapper] pilotpid: 3854127
[2026-01-10 09:14:10] 2026-01-10 08:14:10,727 [wrapper] Pilot exit status: 0
[2026-01-10 09:14:10] 2026-01-10 08:14:10,734 [wrapper] pandaids: 6963076669
[2026-01-10 09:14:10] 2026-01-10 08:14:10,750 [wrapper] cleanup supervisor_pilot 3875016 3854128
[2026-01-10 09:14:10] 2026-01-10 08:14:10,752 [wrapper] Test setup, not cleaning
[2026-01-10 09:14:10] 2026-01-10 08:14:10,755 [wrapper] apfmon messages muted
[2026-01-10 09:14:10] 2026-01-10 08:14:10,757 [wrapper] ==== wrapper stdout END ====
[2026-01-10 09:14:10] 2026-01-10 08:14:10,759 [wrapper] ==== wrapper stderr END ====
[2026-01-10 09:14:10]  *** Error codes and diagnostics ***
[2026-01-10 09:14:10]     "exeErrorCode": 0,
[2026-01-10 09:14:10]     "exeErrorDiag": "",
[2026-01-10 09:14:10]     "pilotErrorCode": 0,
[2026-01-10 09:14:10]     "pilotErrorDiag": "",
[2026-01-10 09:14:10]  *** Listing of results directory ***
[2026-01-10 09:14:10] total 444884
[2026-01-10 09:14:10] -rw-r--r-- 1 boinc boinc    579449 Jan  8 12:09 pilot3.tar.gz
[2026-01-10 09:14:10] -rwx------ 1 boinc boinc     36322 Jan  8 12:10 runpilot2-wrapper.sh
[2026-01-10 09:14:10] -rw-r--r-- 1 boinc boinc      5112 Jan  8 12:14 queuedata.json
[2026-01-10 09:14:10] -rw-r--r-- 1 boinc boinc       100 Jan 10 07:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 09:14:10] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 07:18 run_atlas
[2026-01-10 09:14:10] -rw-r--r-- 1 boinc boinc       105 Jan 10 07:18 job.xml
[2026-01-10 09:14:10] -rw-r--r-- 2 boinc boinc 223322160 Jan 10 07:18 EVNT.47898824._000954.pool.root.1
[2026-01-10 09:14:10] -rw-r--r-- 2 boinc boinc    592402 Jan 10 07:18 input.tar.gz
[2026-01-10 09:14:10] -rw-r--r-- 2 boinc boinc     15847 Jan 10 07:18 start_atlas.sh
[2026-01-10 09:14:10] drwxrwx--x 2 boinc boinc      4096 Jan 10 07:18 shared
[2026-01-10 09:14:10] -rw-r--r-- 1 boinc boinc         0 Jan 10 07:18 boinc_setup_complete
[2026-01-10 09:14:10] -rw-r--r-- 1 boinc boinc      6448 Jan 10 07:18 init_data.xml
[2026-01-10 09:14:10] -rw-r--r-- 1 boinc boinc         0 Jan 10 07:18 boinc_lockfile
[2026-01-10 09:14:10] -rw-r--r-- 1 boinc boinc      2519 Jan 10 07:18 pandaJob.out
[2026-01-10 09:14:10] -rw------- 1 boinc boinc    989374 Jan 10 07:18 agis_schedconf.cvmfs.json
[2026-01-10 09:14:10] -rw------- 1 boinc boinc   1516240 Jan 10 07:18 agis_ddmendpoints.agis.ALL.json
[2026-01-10 09:14:10] drwx------ 5 boinc boinc      4096 Jan 10 07:18 pilot3
[2026-01-10 09:14:10] -rw-r--r-- 1 boinc boinc       529 Jan 10 09:12 boinc_task_state.xml
[2026-01-10 09:14:10] -rw------- 1 boinc boinc 225790610 Jan 10 09:12 HITS.47898826._023965.pool.root.1
[2026-01-10 09:14:10] -rw------- 1 boinc boinc      1013 Jan 10 09:13 memory_monitor_summary.json
[2026-01-10 09:14:10] -rw------- 1 boinc boinc    281685 Jan 10 09:13 log.47898826._023965.job.log.tgz.1
[2026-01-10 09:14:10] -rw------- 1 boinc boinc      7749 Jan 10 09:13 heartbeat.json
[2026-01-10 09:14:10] -rw-r--r-- 1 boinc boinc      8192 Jan 10 09:13 boinc_mmap_file
[2026-01-10 09:14:10] -rw-r--r-- 1 boinc boinc        27 Jan 10 09:13 wrapper_checkpoint.txt
[2026-01-10 09:14:10] -rw------- 1 boinc boinc        95 Jan 10 09:13 pilot_heartbeat.json
[2026-01-10 09:14:10] -rw------- 1 boinc boinc      4824 Jan 10 09:14 pilotlog.txt
[2026-01-10 09:14:10] -rw------- 1 boinc boinc    989532 Jan 10 09:14 log.47898826._023965.job.log.1
[2026-01-10 09:14:10] -rw------- 1 boinc boinc       357 Jan 10 09:14 output.list
[2026-01-10 09:14:10] -rw-r--r-- 1 boinc boinc       620 Jan 10 09:14 runtime_log
[2026-01-10 09:14:10] -rw------- 1 boinc boinc   1290240 Jan 10 09:14 result.tar.gz
[2026-01-10 09:14:10] -rw-r--r-- 1 boinc boinc      8912 Jan 10 09:14 runtime_log.err
[2026-01-10 09:14:10] -rw------- 1 boinc boinc       662 Jan 10 09:14 VCSMDmV52x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1AfKDmW6vZxn.diag
[2026-01-10 09:14:10] -rw-r--r-- 1 boinc boinc     12836 Jan 10 09:14 stderr.txt
[2026-01-10 09:14:10] HITS file was successfully produced:
[2026-01-10 09:14:10] -rw------- 1 boinc boinc 225790610 Jan 10 09:12 shared/HITS.pool.root.1
[2026-01-10 09:14:10]  *** Contents of shared directory: ***
[2026-01-10 09:14:10] total 440456
[2026-01-10 09:14:10] -rw-r--r-- 2 boinc boinc 223322160 Jan 10 07:18 ATLAS.root_0
[2026-01-10 09:14:10] -rw-r--r-- 2 boinc boinc    592402 Jan 10 07:18 input.tar.gz
[2026-01-10 09:14:10] -rw-r--r-- 2 boinc boinc     15847 Jan 10 07:18 start_atlas.sh
[2026-01-10 09:14:10] -rw------- 1 boinc boinc 225790610 Jan 10 09:12 HITS.pool.root.1
[2026-01-10 09:14:10] -rw------- 1 boinc boinc   1290240 Jan 10 09:14 result.tar.gz
09:14:11 (3850408): run_atlas exited; CPU time 19917.611132
09:14:11 (3850408): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN