Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:19:33 (1595094): wrapper (7.7.26015): starting
04:19:33 (1595094): wrapper: running run_atlas (--nthreads 4)
[2026-01-10 04:19:33] Arguments: --nthreads 4
[2026-01-10 04:19:33] Threads: 4
[2026-01-10 04:19:33] Checking for CVMFS
[2026-01-10 04:19:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 04:19:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 04:19:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 04:19:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 04:19:33] 2.9.2.0 645782 3193 95388 154966 2 56 32552671 36864001 0 130560 0 2458960 99.989 122744 6104 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 04:19:33] CVMFS is ok
[2026-01-10 04:19:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 04:19:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 04:19:33] Further information can be found at the LHC@home message board.
[2026-01-10 04:19:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 04:19:33] Checking for apptainer binary...
[2026-01-10 04:19:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 04:19:33] Running /usr/bin/apptainer --version
[2026-01-10 04:19:34] apptainer version 1.4.1-1.1
[2026-01-10 04:19:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 04:19:34] thA315b
[2026-01-10 04:19:34] apptainer works
[2026-01-10 04:19:34] Set ATHENA_PROC_NUMBER=4
[2026-01-10 04:19:34] Set ATHENA_CORE_NUMBER=4
[2026-01-10 04:19:34] Starting ATLAS job with PandaID=6963187121
[2026-01-10 04:19:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 05:44:54]  *** The last 200 lines of the pilot log: ***
[2026-01-10 05:44:54] 2026-01-10 04:44:18,295 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 05:44:54] 2026-01-10 04:44:18,295 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 05:44:54] 2026-01-10 04:44:18,295 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 05:44:54] 2026-01-10 04:44:18,295 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 05:44:54] 2026-01-10 04:44:18,295 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 05:44:54] 2026-01-10 04:44:18,295 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 05:44:54] 2026-01-10 04:44:18,295 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 05:44:54] 2026-01-10 04:44:18,295 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 05:44:54] 2026-01-10 04:44:18,295 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 05:44:54] 2026-01-10 04:44:18,295 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 05:44:54] 2026-01-10 04:44:18,295 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 05:44:54] 2026-01-10 04:44:18,295 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 05:44:54] 2026-01-10 04:44:18,295 | INFO     | job 6963187121 has completed (purged errors)
[2026-01-10 05:44:54] 2026-01-10 04:44:18,295 | INFO     | overall cleanup function is called
[2026-01-10 05:44:54] 2026-01-10 04:44:19,302 | INFO     | --- collectZombieJob: --- 10, [1605483]
[2026-01-10 05:44:54] 2026-01-10 04:44:19,302 | INFO     | zombie collector waiting for pid 1605483
[2026-01-10 05:44:54] 2026-01-10 04:44:19,302 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 05:44:54] 2026-01-10 04:44:19,302 | INFO     | collected zombie processes
[2026-01-10 05:44:54] 2026-01-10 04:44:19,302 | INFO     | will attempt to kill all subprocesses of pid=1605483
[2026-01-10 05:44:54] 2026-01-10 04:44:19,349 | INFO     | process IDs to be killed: [1605483] (in reverse order)
[2026-01-10 05:44:54] 2026-01-10 04:44:19,376 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 05:44:54] 2026-01-10 04:44:19,376 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 05:44:54] 2026-01-10 04:44:19,377 | INFO     | did not find any defunct processes belonging to 1605483
[2026-01-10 05:44:54] 2026-01-10 04:44:19,379 | INFO     | did not find any defunct processes belonging to 1605483
[2026-01-10 05:44:54] 2026-01-10 04:44:19,379 | INFO     | ready for new job
[2026-01-10 05:44:54] 2026-01-10 04:44:19,379 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 05:44:54] 2026-01-10 04:44:19,379 | INFO     | ***************************************
[2026-01-10 05:44:54] 2026-01-10 04:44:19,379 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 05:44:54] 2026-01-10 04:44:19,379 | INFO     | ***************************************
[2026-01-10 05:44:54] 2026-01-10 04:44:19,379 | INFO     | 
[2026-01-10 05:44:54] 2026-01-10 04:44:19,380 | INFO     | architecture information:
[2026-01-10 05:44:54] 2026-01-10 04:44:19,380 | INFO     | executing command: cat /etc/os-release
[2026-01-10 05:44:54] 2026-01-10 04:44:19,390 | INFO     | cat /etc/os-release:
[2026-01-10 05:44:54] NAME="CentOS Linux"
[2026-01-10 05:44:54] VERSION="7 (Core)"
[2026-01-10 05:44:54] ID="centos"
[2026-01-10 05:44:54] ID_LIKE="rhel fedora"
[2026-01-10 05:44:54] VERSION_ID="7"
[2026-01-10 05:44:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 05:44:54] ANSI_COLOR="0;31"
[2026-01-10 05:44:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 05:44:54] HOME_URL="https://www.centos.org/"
[2026-01-10 05:44:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 05:44:54] 
[2026-01-10 05:44:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 05:44:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 05:44:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 05:44:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 05:44:54] 
[2026-01-10 05:44:54] 2026-01-10 04:44:19,390 | INFO     | ***************************************
[2026-01-10 05:44:54] 2026-01-10 04:44:19,893 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 05:44:54] 2026-01-10 04:44:19,907 | INFO     | sufficient remaining disk space (327382204416 B)
[2026-01-10 05:44:54] 2026-01-10 04:44:19,907 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 05:44:54] 2026-01-10 04:44:19,907 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 05:44:54] 2026-01-10 04:44:19,907 | INFO     | update_server=False
[2026-01-10 05:44:54] 2026-01-10 04:44:19,907 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 05:44:54] 2026-01-10 04:44:19,907 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 05:44:54] 2026-01-10 04:44:19,907 | INFO     | aborting loop
[2026-01-10 05:44:54] 2026-01-10 04:44:19,907 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 05:44:54] 2026-01-10 04:44:20,324 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 05:44:54] 2026-01-10 04:44:20,592 | INFO     | all data control threads have been joined
[2026-01-10 05:44:54] 2026-01-10 04:44:20,696 | INFO     | all payload control threads have been joined
[2026-01-10 05:44:54] 2026-01-10 04:44:20,913 | INFO     | [job] retrieve thread has finished
[2026-01-10 05:44:54] 2026-01-10 04:44:20,913 | INFO     | [job] queue monitor thread has finished
[2026-01-10 05:44:54] 2026-01-10 04:44:20,913 | INFO     | [job] job monitor thread has finished
[2026-01-10 05:44:54] 2026-01-10 04:44:21,188 | INFO     | [payload] failed_post thread has finished
[2026-01-10 05:44:54] 2026-01-10 04:44:21,598 | INFO     | [data] control thread has finished
[2026-01-10 05:44:54] 2026-01-10 04:44:21,602 | INFO     | all job control threads have been joined
[2026-01-10 05:44:54] 2026-01-10 04:44:21,603 | INFO     | [data] copytool_in thread has finished
[2026-01-10 05:44:54] 2026-01-10 04:44:21,701 | INFO     | [payload] control thread has finished
[2026-01-10 05:44:54] 2026-01-10 04:44:21,712 | INFO     | [payload] validate_post thread has finished
[2026-01-10 05:44:54] 2026-01-10 04:44:21,772 | INFO     | [job] validate thread has finished
[2026-01-10 05:44:54] 2026-01-10 04:44:21,826 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 05:44:54] 2026-01-10 04:44:21,885 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 05:44:54] 2026-01-10 04:44:22,228 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 05:44:54] 2026-01-10 04:44:22,330 | INFO     | [data] copytool_out thread has finished
[2026-01-10 05:44:54] 2026-01-10 04:44:22,608 | INFO     | [job] control thread has finished
[2026-01-10 05:44:54] 2026-01-10 04:44:23,169 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 05:44:54] 2026-01-10 04:44:27,177 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 05:44:54] 2026-01-10 04:44:30,269 | INFO     | job.realtimelogging is not enabled
[2026-01-10 05:44:54] 2026-01-10 04:44:31,275 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 05:44:54] 2026-01-10 04:44:47,636 | INFO     | [monitor] cgroup control has ended
[2026-01-10 05:44:54] 2026-01-10 04:44:49,057 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140455464834880)>', '<ExcThread(monitor, started 140455111005952)>']
[2026-01-10 05:44:54] 2026-01-10 04:44:50,677 | INFO     | PID=1598915 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 05:44:54] 2026-01-10 04:44:50,677 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 05:44:54] 2026-01-10 04:44:50,677 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 05:44:54] 2026-01-10 04:44:50,677 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 05:44:54] 2026-01-10 04:44:50,677 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 05:44:54] 2026-01-10 04:44:50,677 | INFO     | [monitor] control thread has ended
[2026-01-10 05:44:54] 2026-01-10 04:44:54,060 | INFO     | all workflow threads have been joined
[2026-01-10 05:44:54] 2026-01-10 04:44:54,060 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 05:44:54] 2026-01-10 04:44:54,060 | INFO     | traces error code: 0
[2026-01-10 05:44:54] 2026-01-10 04:44:54,060 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 05:44:54] 2026-01-10 04:44:54,116 [wrapper] ==== pilot stdout END ====
[2026-01-10 05:44:54] 2026-01-10 04:44:54,119 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 05:44:54] 2026-01-10 04:44:54,122 [wrapper] pilotpid: 1598915
[2026-01-10 05:44:54] 2026-01-10 04:44:54,124 [wrapper] Pilot exit status: 0
[2026-01-10 05:44:54] 2026-01-10 04:44:54,132 [wrapper] pandaids: 6963187121
[2026-01-10 05:44:54] 2026-01-10 04:44:54,150 [wrapper] cleanup supervisor_pilot 1617560 1598916
[2026-01-10 05:44:54] 2026-01-10 04:44:54,153 [wrapper] Test setup, not cleaning
[2026-01-10 05:44:54] 2026-01-10 04:44:54,156 [wrapper] apfmon messages muted
[2026-01-10 05:44:54] 2026-01-10 04:44:54,158 [wrapper] ==== wrapper stdout END ====
[2026-01-10 05:44:54] 2026-01-10 04:44:54,161 [wrapper] ==== wrapper stderr END ====
[2026-01-10 05:44:54]  *** Error codes and diagnostics ***
[2026-01-10 05:44:54]     "exeErrorCode": 0,
[2026-01-10 05:44:54]     "exeErrorDiag": "",
[2026-01-10 05:44:54]     "pilotErrorCode": 0,
[2026-01-10 05:44:54]     "pilotErrorDiag": "",
[2026-01-10 05:44:54]  *** Listing of results directory ***
[2026-01-10 05:44:54] total 434196
[2026-01-10 05:44:54] -rwx------ 1 boinc boinc     36322 Jan  9 02:01 runpilot2-wrapper.sh
[2026-01-10 05:44:54] -rw-r--r-- 1 boinc boinc    579449 Jan  9 02:06 pilot3.tar.gz
[2026-01-10 05:44:54] -rw-r--r-- 1 boinc boinc      5112 Jan  9 02:06 queuedata.json
[2026-01-10 05:44:54] -rw-r--r-- 1 boinc boinc       100 Jan 10 04:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 05:44:54] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 04:19 run_atlas
[2026-01-10 05:44:54] -rw-r--r-- 1 boinc boinc       105 Jan 10 04:19 job.xml
[2026-01-10 05:44:54] -rw-r--r-- 2 boinc boinc 225045758 Jan 10 04:19 EVNT.47898824._001418.pool.root.1
[2026-01-10 05:44:54] -rw-r--r-- 2 boinc boinc    592402 Jan 10 04:19 input.tar.gz
[2026-01-10 05:44:54] -rw-r--r-- 2 boinc boinc     15847 Jan 10 04:19 start_atlas.sh
[2026-01-10 05:44:54] drwxrwx--x 2 boinc boinc      4096 Jan 10 04:19 shared
[2026-01-10 05:44:54] -rw-r--r-- 1 boinc boinc         0 Jan 10 04:19 boinc_setup_complete
[2026-01-10 05:44:54] -rw-r--r-- 1 boinc boinc      6443 Jan 10 04:19 init_data.xml
[2026-01-10 05:44:54] -rw-r--r-- 1 boinc boinc         0 Jan 10 04:19 boinc_lockfile
[2026-01-10 05:44:54] -rw-r--r-- 1 boinc boinc      2519 Jan 10 04:19 pandaJob.out
[2026-01-10 05:44:54] -rw------- 1 boinc boinc    989374 Jan 10 04:19 agis_schedconf.cvmfs.json
[2026-01-10 05:44:54] -rw------- 1 boinc boinc   1516240 Jan 10 04:19 agis_ddmendpoints.agis.ALL.json
[2026-01-10 05:44:54] drwx------ 5 boinc boinc      4096 Jan 10 04:19 pilot3
[2026-01-10 05:44:54] -rw------- 1 boinc boinc 213619671 Jan 10 05:43 HITS.47898826._036995.pool.root.1
[2026-01-10 05:44:54] -rw-r--r-- 1 boinc boinc       530 Jan 10 05:43 boinc_task_state.xml
[2026-01-10 05:44:54] -rw------- 1 boinc boinc      1012 Jan 10 05:44 memory_monitor_summary.json
[2026-01-10 05:44:54] -rw------- 1 boinc boinc        95 Jan 10 05:44 pilot_heartbeat.json
[2026-01-10 05:44:54] -rw------- 1 boinc boinc    281265 Jan 10 05:44 log.47898826._036995.job.log.tgz.1
[2026-01-10 05:44:54] -rw------- 1 boinc boinc      7764 Jan 10 05:44 heartbeat.json
[2026-01-10 05:44:54] -rw-r--r-- 1 boinc boinc      8192 Jan 10 05:44 boinc_mmap_file
[2026-01-10 05:44:54] -rw-r--r-- 1 boinc boinc        27 Jan 10 05:44 wrapper_checkpoint.txt
[2026-01-10 05:44:54] -rw------- 1 boinc boinc      4824 Jan 10 05:44 pilotlog.txt
[2026-01-10 05:44:54] -rw------- 1 boinc boinc    744285 Jan 10 05:44 log.47898826._036995.job.log.1
[2026-01-10 05:44:54] -rw------- 1 boinc boinc       357 Jan 10 05:44 output.list
[2026-01-10 05:44:54] -rw-r--r-- 1 boinc boinc       620 Jan 10 05:44 runtime_log
[2026-01-10 05:44:54] -rw------- 1 boinc boinc   1044480 Jan 10 05:44 result.tar.gz
[2026-01-10 05:44:54] -rw-r--r-- 1 boinc boinc      8902 Jan 10 05:44 runtime_log.err
[2026-01-10 05:44:54] -rw------- 1 boinc boinc       659 Jan 10 05:44 FPCMDmx3Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpqgKDmj88oom.diag
[2026-01-10 05:44:54] -rw-r--r-- 1 boinc boinc     12129 Jan 10 05:44 stderr.txt
[2026-01-10 05:44:54] HITS file was successfully produced:
[2026-01-10 05:44:54] -rw------- 1 boinc boinc 213619671 Jan 10 05:43 shared/HITS.pool.root.1
[2026-01-10 05:44:54]  *** Contents of shared directory: ***
[2026-01-10 05:44:54] total 430012
[2026-01-10 05:44:54] -rw-r--r-- 2 boinc boinc 225045758 Jan 10 04:19 ATLAS.root_0
[2026-01-10 05:44:54] -rw-r--r-- 2 boinc boinc    592402 Jan 10 04:19 input.tar.gz
[2026-01-10 05:44:54] -rw-r--r-- 2 boinc boinc     15847 Jan 10 04:19 start_atlas.sh
[2026-01-10 05:44:54] -rw------- 1 boinc boinc 213619671 Jan 10 05:43 HITS.pool.root.1
[2026-01-10 05:44:54] -rw------- 1 boinc boinc   1044480 Jan 10 05:44 result.tar.gz
05:44:55 (1595094): run_atlas exited; CPU time 19329.823157
05:44:55 (1595094): called boinc_finish(0)

</stderr_txt>
]]>

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