Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:01:19 (2178925): wrapper (7.7.26015): starting
18:01:19 (2178925): wrapper: running run_atlas (--nthreads 10)
[2026-01-09 18:01:19] Arguments: --nthreads 10
[2026-01-09 18:01:19] Threads: 10
[2026-01-09 18:01:19] Checking for CVMFS
[2026-01-09 18:01:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 18:01:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 18:01:20] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 18:01:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 18:01:22] 2.13.3.0 3539256 17542 212972 154959 3 67 35247705 40960001 15185 16776704 0 38965664 99.617 47351634 35178 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 18:01:22] CVMFS is ok
[2026-01-09 18:01:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 18:01:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 18:01:22] Further information can be found at the LHC@home message board.
[2026-01-09 18:01:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 18:01:22] Checking for apptainer binary...
[2026-01-09 18:01:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 18:01:22] Running /usr/bin/apptainer --version
[2026-01-09 18:01:22] apptainer version 1.4.5-2.el9
[2026-01-09 18:01:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 18:01:23] c-210-31-1.aglt2.org
[2026-01-09 18:01:23] apptainer works
[2026-01-09 18:01:23] Set ATHENA_PROC_NUMBER=10
[2026-01-09 18:01:23] Set ATHENA_CORE_NUMBER=10
[2026-01-09 18:01:23] Starting ATLAS job with PandaID=6963187042
[2026-01-09 18:01:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
01:30:42 (3151970): wrapper (7.7.26015): starting
01:30:42 (3151970): wrapper: running run_atlas (--nthreads 9)
[2026-01-10 01:30:42] Arguments: --nthreads 9
[2026-01-10 01:30:42] Threads: 9
[2026-01-10 01:30:42] This job has been restarted, cleaning up previous attempt
[2026-01-10 01:30:42] Checking for CVMFS
[2026-01-10 01:30:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 01:30:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 01:30:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 01:30:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 01:30:43] 2.13.3.0 3539256 17991 220396 154970 3 336 24129159 40960001 14412 16776704 0 39891615 99.605 49520444 34958 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 01:30:43] CVMFS is ok
[2026-01-10 01:30:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 01:30:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 01:30:43] Further information can be found at the LHC@home message board.
[2026-01-10 01:30:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 01:30:43] Checking for apptainer binary...
[2026-01-10 01:30:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 01:30:43] Running /usr/bin/apptainer --version
[2026-01-10 01:30:43] apptainer version 1.4.5-2.el9
[2026-01-10 01:30:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 01:30:43] c-210-31-1.aglt2.org
[2026-01-10 01:30:43] apptainer works
[2026-01-10 01:30:43] Set ATHENA_PROC_NUMBER=9
[2026-01-10 01:30:43] Set ATHENA_CORE_NUMBER=9
[2026-01-10 01:30:43] Starting ATLAS job with PandaID=6963187042
[2026-01-10 01:30:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 07:14:52]  *** The last 200 lines of the pilot log: ***
[2026-01-10 07:14:52] 2026-01-10 12:13:40,495 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 07:14:52] 2026-01-10 12:13:41,009 | INFO     | time since job start (20554s) is within the limit (349056.0s)
[2026-01-10 07:14:52] 2026-01-10 12:13:42,120 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-10 07:14:52] 2026-01-10 12:13:42,130 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2949.1649999999995
[2026-01-10 07:14:52] 2026-01-10 12:13:42,157 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963187042/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 07:14:52] 2026-01-10 12:13:42,158 | INFO     | extracted standard info from prmon json
[2026-01-10 07:14:52] 2026-01-10 12:13:42,158 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 07:14:52] 2026-01-10 12:13:42,158 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 07:14:52] 2026-01-10 12:13:42,168 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 07:14:52] 2026-01-10 12:13:42,168 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 07:14:52] 2026-01-10 12:13:42,182 | INFO     | fitting pss+swap vs Time
[2026-01-10 07:14:52] 2026-01-10 12:13:42,183 | INFO     | sum of square deviations: 11762784703.354101
[2026-01-10 07:14:52] 2026-01-10 12:13:42,194 | INFO     | sum of deviations: -75226073680.81256
[2026-01-10 07:14:52] 2026-01-10 12:13:42,194 | INFO     | mean x: 1768036946.2291667
[2026-01-10 07:14:52] 2026-01-10 12:13:42,194 | INFO     | mean y: 2605355.348214286
[2026-01-10 07:14:52] 2026-01-10 12:13:42,194 | INFO     | intersect: 11309662395.124615
[2026-01-10 07:14:52] 2026-01-10 12:13:42,195 | INFO     | chi2: 2.4733364481039413
[2026-01-10 07:14:52] 2026-01-10 12:13:42,195 | INFO     | sum of square deviations: 11245447057.528715
[2026-01-10 07:14:52] 2026-01-10 12:13:42,206 | INFO     | sum of deviations: -51983385751.951675
[2026-01-10 07:14:52] 2026-01-10 12:13:42,206 | INFO     | mean x: 1768036793.7280967
[2026-01-10 07:14:52] 2026-01-10 12:13:42,206 | INFO     | mean y: 2612130.489425982
[2026-01-10 07:14:52] 2026-01-10 12:13:42,206 | INFO     | intersect: 8175567656.564275
[2026-01-10 07:14:52] 2026-01-10 12:13:42,207 | INFO     | chi2: 1.7939154348653454
[2026-01-10 07:14:52] 2026-01-10 12:13:42,207 | INFO     | current chi2=1.7939154348653454 (change=27.469817693401144 %)
[2026-01-10 07:14:52] 2026-01-10 12:13:42,207 | INFO     | sum of square deviations: 10743504805.202482
[2026-01-10 07:14:52] 2026-01-10 12:13:42,218 | INFO     | sum of deviations: -50643176251.8773
[2026-01-10 07:14:52] 2026-01-10 12:13:42,218 | INFO     | mean x: 1768036641.2269938
[2026-01-10 07:14:52] 2026-01-10 12:13:42,218 | INFO     | mean y: 2612537.3496932513
[2026-01-10 07:14:52] 2026-01-10 12:13:42,218 | INFO     | intersect: 8336856609.924319
[2026-01-10 07:14:52] 2026-01-10 12:13:42,219 | INFO     | chi2: 1.7928293635621095
[2026-01-10 07:14:52] 2026-01-10 12:13:42,219 | INFO     | current chi2=1.7928293635621095 (change=0.06054194540766773 %)
[2026-01-10 07:14:52] 2026-01-10 12:13:42,219 | INFO     | right removable region: 325
[2026-01-10 07:14:52] 2026-01-10 12:13:42,219 | INFO     | sum of square deviations: 11245379345.655529
[2026-01-10 07:14:52] 2026-01-10 12:13:42,230 | INFO     | sum of deviations: -123799744268.28703
[2026-01-10 07:14:52] 2026-01-10 12:13:42,230 | INFO     | mean x: 1768037098.7401812
[2026-01-10 07:14:52] 2026-01-10 12:13:42,230 | INFO     | mean y: 2619559.4501510574
[2026-01-10 07:14:52] 2026-01-10 12:13:42,230 | INFO     | intersect: 19466839836.32683
[2026-01-10 07:14:52] 2026-01-10 12:13:42,231 | INFO     | chi2: 1.0832361904270147
[2026-01-10 07:14:52] 2026-01-10 12:13:42,231 | INFO     | current chi2=1.0832361904270147 (change=56.20344368201815 %)
[2026-01-10 07:14:52] 2026-01-10 12:13:42,231 | INFO     | sum of square deviations: 10743369625.374262
[2026-01-10 07:14:52] 2026-01-10 12:13:42,244 | INFO     | sum of deviations: -118238279066.07356
[2026-01-10 07:14:52] 2026-01-10 12:13:42,244 | INFO     | mean x: 1768037251.2515337
[2026-01-10 07:14:52] 2026-01-10 12:13:42,244 | INFO     | mean y: 2617852.6472392636
[2026-01-10 07:14:52] 2026-01-10 12:13:42,244 | INFO     | intersect: 19461101475.787952
[2026-01-10 07:14:52] 2026-01-10 12:13:42,245 | INFO     | chi2: 1.0685580000952417
[2026-01-10 07:14:52] 2026-01-10 12:13:42,245 | INFO     | current chi2=1.0685580000952417 (change=1.355031382951376 %)
[2026-01-10 07:14:52] 2026-01-10 12:13:42,245 | INFO     | left removable region: 20
[2026-01-10 07:14:52] 2026-01-10 12:13:42,254 | INFO     | sum of square deviations: 8797975643.934418
[2026-01-10 07:14:52] 2026-01-10 12:13:42,256 | INFO     | sum of deviations: -59299507101.06552
[2026-01-10 07:14:52] 2026-01-10 12:13:42,256 | INFO     | mean x: 1768037220.7704918
[2026-01-10 07:14:52] 2026-01-10 12:13:42,256 | INFO     | mean y: 2614339.370491803
[2026-01-10 07:14:52] 2026-01-10 12:13:42,256 | INFO     | intersect: 11919416564.244831
[2026-01-10 07:14:52] 2026-01-10 12:13:42,257 | INFO     | chi2: 0.27331501086315324
[2026-01-10 07:14:52] 2026-01-10 12:13:42,257 | INFO     | current memory leak: -6.74 B/s (using 305 data points, chi2=0.27)
[2026-01-10 07:14:52] 2026-01-10 12:13:42,268 | INFO     | could have reported an average CPU frequency of 2934 MHz (15 samples)
[2026-01-10 07:14:52] 2026-01-10 12:13:42,268 | INFO     | ..............................
[2026-01-10 07:14:52] 2026-01-10 12:13:42,268 | INFO     | . Timing measurements:
[2026-01-10 07:14:52] 2026-01-10 12:13:42,268 | INFO     | . get job = 0 s
[2026-01-10 07:14:52] 2026-01-10 12:13:42,268 | INFO     | . initial setup = 2 s
[2026-01-10 07:14:52] 2026-01-10 12:13:42,268 | INFO     | . payload setup = 18 s
[2026-01-10 07:14:52] 2026-01-10 12:13:42,268 | INFO     | . stage-in = 0 s
[2026-01-10 07:14:52] 2026-01-10 12:13:42,268 | INFO     | . payload execution = 20467 s
[2026-01-10 07:14:52] 2026-01-10 12:13:42,269 | INFO     | . stage-out = 4 s
[2026-01-10 07:14:52] 2026-01-10 12:13:42,269 | INFO     | . log creation = 0 s
[2026-01-10 07:14:52] 2026-01-10 12:13:42,269 | INFO     | ..............................
[2026-01-10 07:14:52] 2026-01-10 12:13:42,787 | INFO     | 
[2026-01-10 07:14:52] 2026-01-10 12:13:42,787 | INFO     | job summary report
[2026-01-10 07:14:52] 2026-01-10 12:13:42,787 | INFO     | --------------------------------------------------
[2026-01-10 07:14:52] 2026-01-10 12:13:42,787 | INFO     | PanDA job id: 6963187042
[2026-01-10 07:14:52] 2026-01-10 12:13:42,787 | INFO     | task id: 47898826
[2026-01-10 07:14:52] 2026-01-10 12:13:42,787 | INFO     | errors: (none)
[2026-01-10 07:14:52] 2026-01-10 12:13:42,787 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 07:14:52] 2026-01-10 12:13:42,787 | INFO     | pilot state: finished 
[2026-01-10 07:14:52] 2026-01-10 12:13:42,787 | INFO     | transexitcode: 0
[2026-01-10 07:14:52] 2026-01-10 12:13:42,787 | INFO     | exeerrorcode: 0
[2026-01-10 07:14:52] 2026-01-10 12:13:42,788 | INFO     | exeerrordiag: 
[2026-01-10 07:14:52] 2026-01-10 12:13:42,788 | INFO     | exitcode: 0
[2026-01-10 07:14:52] 2026-01-10 12:13:42,788 | INFO     | exitmsg: OK
[2026-01-10 07:14:52] 2026-01-10 12:13:42,788 | INFO     | cpuconsumptiontime: 57771 s
[2026-01-10 07:14:52] 2026-01-10 12:13:42,788 | INFO     | nevents: 400
[2026-01-10 07:14:52] 2026-01-10 12:13:42,788 | INFO     | neventsw: 0
[2026-01-10 07:14:52] 2026-01-10 12:13:42,788 | INFO     | pid: 3168715
[2026-01-10 07:14:52] 2026-01-10 12:13:42,788 | INFO     | pgrp: 3168715
[2026-01-10 07:14:52] 2026-01-10 12:13:42,788 | INFO     | corecount: 9
[2026-01-10 07:14:52] 2026-01-10 12:13:42,788 | INFO     | event service: False
[2026-01-10 07:14:52] 2026-01-10 12:13:42,788 | INFO     | sizes: {0: 2283741, 1: 2283996, 2: 2283996, 11: 2284286, 13: 2284314, 20490: 2317824, 20496: 2326822, 20497: 2326878, 20529: 2327072}
[2026-01-10 07:14:52] 2026-01-10 12:13:42,788 | INFO     | --------------------------------------------------
[2026-01-10 07:14:52] 2026-01-10 12:13:42,788 | INFO     | 
[2026-01-10 07:14:52] 2026-01-10 12:13:42,789 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-10 07:14:52] 2026-01-10 12:13:42,870 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 07:14:52] 2026-01-10 12:13:42,871 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 07:14:52] 2026-01-10 12:13:42,871 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 07:14:52] 2026-01-10 12:13:42,871 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 07:14:52] 2026-01-10 12:13:42,871 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 07:14:52] 2026-01-10 12:13:42,871 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 07:14:52] 2026-01-10 12:13:42,871 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 07:14:52] 2026-01-10 12:13:42,871 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 07:14:52] 2026-01-10 12:13:42,872 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 07:14:52] 2026-01-10 12:13:42,872 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 07:14:52] 2026-01-10 12:13:42,872 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 07:14:52] 2026-01-10 12:13:42,872 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 07:14:52] 2026-01-10 12:13:42,872 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 07:14:52] 2026-01-10 12:13:42,872 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 07:14:52] 2026-01-10 12:13:42,872 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 07:14:52] 2026-01-10 12:13:42,872 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 07:14:52] 2026-01-10 12:13:42,873 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 07:14:52] 2026-01-10 12:13:42,873 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 07:14:52] 2026-01-10 12:13:42,873 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 07:14:52] 2026-01-10 12:13:42,873 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 07:14:52] 2026-01-10 12:13:42,873 | INFO     | job 6963187042 has completed (purged errors)
[2026-01-10 07:14:52] 2026-01-10 12:13:42,878 | INFO     | overall cleanup function is called
[2026-01-10 07:14:52] 2026-01-10 12:13:43,886 | INFO     | --- collectZombieJob: --- 10, [3168715]
[2026-01-10 07:14:52] 2026-01-10 12:13:43,892 | INFO     | zombie collector waiting for pid 3168715
[2026-01-10 07:14:52] 2026-01-10 12:13:43,892 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 07:14:52] 2026-01-10 12:13:43,892 | INFO     | collected zombie processes
[2026-01-10 07:14:52] 2026-01-10 12:13:43,892 | INFO     | will attempt to kill all subprocesses of pid=3168715
[2026-01-10 07:14:52] 2026-01-10 12:13:44,742 | INFO     | process IDs to be killed: [3168715] (in reverse order)
[2026-01-10 07:14:52] 2026-01-10 12:13:44,873 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 07:14:52] 2026-01-10 12:13:44,874 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 07:14:52] 2026-01-10 12:13:44,889 | INFO     | did not find any defunct processes belonging to 3168715
[2026-01-10 07:14:52] 2026-01-10 12:13:44,913 | INFO     | did not find any defunct processes belonging to 3168715
[2026-01-10 07:14:52] 2026-01-10 12:13:44,913 | INFO     | ready for new job
[2026-01-10 07:14:52] 2026-01-10 12:13:44,913 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 07:14:52] 2026-01-10 12:13:44,915 | INFO     | ***************************************
[2026-01-10 07:14:52] 2026-01-10 12:13:44,915 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 07:14:52] 2026-01-10 12:13:44,915 | INFO     | ***************************************
[2026-01-10 07:14:52] 2026-01-10 12:13:44,916 | INFO     | 
[2026-01-10 07:14:52] 2026-01-10 12:13:44,924 | INFO     | architecture information:
[2026-01-10 07:14:52] 2026-01-10 12:13:44,928 | INFO     | executing command: cat /etc/os-release
[2026-01-10 07:14:52] 2026-01-10 12:13:45,123 | INFO     | cat /etc/os-release:
[2026-01-10 07:14:52] NAME="CentOS Linux"
[2026-01-10 07:14:52] VERSION="7 (Core)"
[2026-01-10 07:14:52] ID="centos"
[2026-01-10 07:14:52] ID_LIKE="rhel fedora"
[2026-01-10 07:14:52] VERSION_ID="7"
[2026-01-10 07:14:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 07:14:52] ANSI_COLOR="0;31"
[2026-01-10 07:14:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 07:14:52] HOME_URL="https://www.centos.org/"
[2026-01-10 07:14:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 07:14:52] 
[2026-01-10 07:14:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 07:14:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 07:14:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 07:14:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 07:14:52] 
[2026-01-10 07:14:52] 2026-01-10 12:13:45,123 | INFO     | ***************************************
[2026-01-10 07:14:52] 2026-01-10 12:13:45,627 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-10 07:14:52] 2026-01-10 12:13:45,698 | INFO     | sufficient remaining disk space (74928095232 B)
[2026-01-10 07:14:52] 2026-01-10 12:13:45,698 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 07:14:52] 2026-01-10 12:13:45,699 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 07:14:52] 2026-01-10 12:13:45,699 | INFO     | update_server=False
[2026-01-10 07:14:52] 2026-01-10 12:13:45,699 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 07:14:52] 2026-01-10 12:13:45,703 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 07:14:52] 2026-01-10 12:13:46,297 | INFO     | all job control threads have been joined
[2026-01-10 07:14:52] 2026-01-10 12:13:46,537 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:14:52] 2026-01-10 12:13:46,537 | INFO     | aborting loop
[2026-01-10 07:14:52] 2026-01-10 12:13:46,594 | INFO     | all payload control threads have been joined
[2026-01-10 07:14:52] 2026-01-10 12:13:46,705 | INFO     | [job] retrieve thread has finished
[2026-01-10 07:14:52] 2026-01-10 12:13:46,799 | INFO     | all data control threads have been joined
[2026-01-10 07:14:52] 2026-01-10 12:13:47,023 | INFO     | [payload] validate_post thread has finished
[2026-01-10 07:14:52] 2026-01-10 12:13:47,153 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 07:14:52] 2026-01-10 12:13:47,304 | INFO     | [job] control thread has finished
[2026-01-10 07:14:52] 2026-01-10 12:13:47,500 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:14:52] 2026-01-10 12:13:47,543 | INFO     | [job] job monitor thread has finished
[2026-01-10 07:14:52] 2026-01-10 12:13:47,600 | INFO     | [payload] control thread has finished
[2026-01-10 07:14:52] 2026-01-10 12:13:47,702 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 07:14:52] 2026-01-10 12:13:47,710 | INFO     | [data] copytool_out thread has finished
[2026-01-10 07:14:52] 2026-01-10 12:13:47,805 | INFO     | [data] control thread has finished
[2026-01-10 07:14:52] 2026-01-10 12:13:47,810 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 07:14:52] 2026-01-10 12:13:47,829 | INFO     | [job] validate thread has finished
[2026-01-10 07:14:52] 2026-01-10 12:13:47,904 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 07:14:52] 2026-01-10 12:13:47,958 | INFO     | [payload] failed_post thread has finished
[2026-01-10 07:14:52] 2026-01-10 12:13:48,089 | INFO     | [data] copytool_in thread has finished
[2026-01-10 07:14:52] 2026-01-10 12:13:48,093 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 07:14:52] 2026-01-10 12:13:48,507 | INFO     | [job] queue monitor thread has finished
[2026-01-10 07:14:52] 2026-01-10 12:13:51,914 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 07:14:52] 2026-01-10 12:14:14,618 | INFO     | PID=3161033 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 07:14:52] 2026-01-10 12:14:14,623 | INFO     | .. there are 13 such processes running
[2026-01-10 07:14:52] 2026-01-10 12:14:14,624 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 07:14:52] 2026-01-10 12:14:14,625 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 07:14:52] 2026-01-10 12:14:14,625 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 07:14:52] 2026-01-10 12:14:43,767 | INFO     | [monitor] cgroup control has ended
[2026-01-10 07:14:52] 2026-01-10 12:14:45,759 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139784927110976)>', '<ExcThread(monitor, started 139784559236864)>']
[2026-01-10 07:14:52] 2026-01-10 12:14:45,829 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 07:14:52] 2026-01-10 12:14:45,830 | INFO     | [monitor] control thread has ended
[2026-01-10 07:14:52] 2026-01-10 12:14:50,785 | INFO     | all workflow threads have been joined
[2026-01-10 07:14:52] 2026-01-10 12:14:50,785 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 07:14:52] 2026-01-10 12:14:50,785 | INFO     | traces error code: 0
[2026-01-10 07:14:52] 2026-01-10 12:14:50,785 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 07:14:52] 2026-01-10 12:14:51,871 [wrapper] ==== pilot stdout END ====
[2026-01-10 07:14:52] 2026-01-10 12:14:51,892 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 07:14:52] 2026-01-10 12:14:51,908 [wrapper] pilotpid: 3161033
[2026-01-10 07:14:52] 2026-01-10 12:14:51,928 [wrapper] Pilot exit status: 0
[2026-01-10 07:14:52] 2026-01-10 12:14:52,044 [wrapper] pandaids: 6963187042 6963187042
[2026-01-10 07:14:52] 2026-01-10 12:14:52,306 [wrapper] cleanup supervisor_pilot 3951761 3161036
[2026-01-10 07:14:52] 2026-01-10 12:14:52,309 [wrapper] Test setup, not cleaning
[2026-01-10 07:14:52] 2026-01-10 12:14:52,312 [wrapper] apfmon messages muted
[2026-01-10 07:14:52] 2026-01-10 12:14:52,315 [wrapper] ==== wrapper stdout END ====
[2026-01-10 07:14:52] 2026-01-10 12:14:52,318 [wrapper] ==== wrapper stderr END ====
[2026-01-10 07:14:52]  *** Error codes and diagnostics ***
[2026-01-10 07:14:52]     "exeErrorCode": 0,
[2026-01-10 07:14:52]     "exeErrorDiag": "",
[2026-01-10 07:14:52]     "pilotErrorCode": 0,
[2026-01-10 07:14:52]     "pilotErrorDiag": "",
[2026-01-10 07:14:52]  *** Listing of results directory ***
[2026-01-10 07:14:53] total 664504
[2026-01-10 07:14:53] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-10 07:14:53] -rwx------. 1 boincer umatlas     36322 Jan  8 20:01 runpilot2-wrapper.sh
[2026-01-10 07:14:53] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-10 07:14:53] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 20:06 queuedata.json
[2026-01-10 07:14:53] -rw-r--r--. 1 boincer umatlas       100 Jan  9 18:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 07:14:53] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 18:01 run_atlas
[2026-01-10 07:14:53] -rw-r--r--. 1 boincer umatlas       105 Jan  9 18:01 job.xml
[2026-01-10 07:14:53] -rw-r--r--. 3 boincer umatlas 225949498 Jan  9 18:01 EVNT.47898824._001417.pool.root.1
[2026-01-10 07:14:53] -rw-r--r--. 3 boincer umatlas 225949498 Jan  9 18:01 ATLAS.root_0
[2026-01-10 07:14:53] -rw-r--r--. 2 boincer umatlas    592396 Jan  9 18:01 input.tar.gz
[2026-01-10 07:14:53] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 18:01 start_atlas.sh
[2026-01-10 07:14:53] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 18:01 shared
[2026-01-10 07:14:53] -rw-r--r--. 1 boincer umatlas         0 Jan  9 18:01 boinc_lockfile
[2026-01-10 07:14:53] -rw-r--r--. 1 boincer umatlas      2518 Jan 10 01:30 pandaJob.out
[2026-01-10 07:14:53] -rw-------. 1 boincer umatlas        57 Jan 10 01:30 setup.sh.local
[2026-01-10 07:14:53] -rw-------. 1 boincer umatlas    989374 Jan 10 01:31 agis_schedconf.cvmfs.json
[2026-01-10 07:14:53] -rw-------. 1 boincer umatlas 218386077 Jan 10 07:11 HITS.47898826._036950.pool.root.1
[2026-01-10 07:14:53] -rw-r--r--. 1 boincer umatlas       532 Jan 10 07:12 boinc_task_state.xml
[2026-01-10 07:14:53] -rw-------. 1 boincer umatlas      1058 Jan 10 07:13 memory_monitor_summary.json
[2026-01-10 07:14:53] -rw-------. 1 boincer umatlas   1516240 Jan 10 07:13 agis_ddmendpoints.agis.ALL.json
[2026-01-10 07:14:53] -rw-------. 1 boincer umatlas    533988 Jan 10 07:13 log.47898826._036950.job.log.tgz.1
[2026-01-10 07:14:53] -rw-------. 1 boincer umatlas      7856 Jan 10 07:13 heartbeat.json
[2026-01-10 07:14:53] -rw-r--r--. 1 boincer umatlas      6844 Jan 10 07:13 init_data.xml
[2026-01-10 07:14:53] -rw-------. 1 boincer umatlas        96 Jan 10 07:14 pilot_heartbeat.json
[2026-01-10 07:14:53] -rw-r--r--. 1 boincer umatlas        29 Jan 10 07:14 wrapper_checkpoint.txt
[2026-01-10 07:14:53] -rw-------. 1 boincer umatlas      4824 Jan 10 07:14 pilotlog.txt
[2026-01-10 07:14:53] -rw-------. 1 boincer umatlas   2588776 Jan 10 07:14 log.47898826._036950.job.log.1
[2026-01-10 07:14:53] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 07:14 boinc_mmap_file
[2026-01-10 07:14:53] -rw-------. 1 boincer umatlas       357 Jan 10 07:14 output.list
[2026-01-10 07:14:53] -rw-r--r--. 1 boincer umatlas       620 Jan 10 07:14 runtime_log
[2026-01-10 07:14:53] -rw-------. 1 boincer umatlas   3143680 Jan 10 07:14 result.tar.gz
[2026-01-10 07:14:53] -rw-r--r--. 1 boincer umatlas      9438 Jan 10 07:14 runtime_log.err
[2026-01-10 07:14:53] -rw-------. 1 boincer umatlas       789 Jan 10 07:14 rMYLDmv3Fy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmB4lKDmGyor6m.diag
[2026-01-10 07:14:53] -rw-r--r--. 1 boincer umatlas     23402 Jan 10 07:14 stderr.txt
[2026-01-10 07:14:53] HITS file was successfully produced:
[2026-01-10 07:14:53] -rw-------. 1 boincer umatlas 218386077 Jan 10 07:11 shared/HITS.pool.root.1
[2026-01-10 07:14:53]  *** Contents of shared directory: ***
[2026-01-10 07:14:53] total 437596
[2026-01-10 07:14:53] -rw-r--r--. 3 boincer umatlas 225949498 Jan  9 18:01 ATLAS.root_0
[2026-01-10 07:14:53] -rw-r--r--. 2 boincer umatlas    592396 Jan  9 18:01 input.tar.gz
[2026-01-10 07:14:53] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 18:01 start_atlas.sh
[2026-01-10 07:14:53] -rw-------. 1 boincer umatlas 218386077 Jan 10 07:11 HITS.pool.root.1
[2026-01-10 07:14:53] -rw-------. 1 boincer umatlas   3143680 Jan 10 07:14 result.tar.gz
07:15:14 (3151970): run_atlas exited; CPU time 58328.474905
07:15:14 (3151970): called boinc_finish(0)

</stderr_txt>
]]>

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