Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:29:11 (18646): wrapper (7.7.26015): starting
04:29:11 (18646): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 04:29:11] Arguments: --nthreads 8
[2026-01-10 04:29:11] Threads: 8
[2026-01-10 04:29:11] Checking for CVMFS
[2026-01-10 04:29:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 04:29:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 04:29:13] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 04:29:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 04:29:15] 2.11.2.0 18097 36315 131484 154966 2 86 20781061 25165825 899 130560 0 15345533 99.747 13024548 2618 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-10 04:29:15] CVMFS is ok
[2026-01-10 04:29:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 04:29:15] Checking for apptainer binary...
[2026-01-10 04:29:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 04:29:15] Running /usr/bin/apptainer --version
[2026-01-10 04:29:15] apptainer version 1.3.2-1.el7
[2026-01-10 04:29:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 04:29:33] cg-vwn387.simple-grid.lan
[2026-01-10 04:29:33] apptainer works
[2026-01-10 04:29:33] Set ATHENA_PROC_NUMBER=8
[2026-01-10 04:29:33] Set ATHENA_CORE_NUMBER=8
[2026-01-10 04:29:33] Starting ATLAS job with PandaID=6963186625
[2026-01-10 04:29:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 10:58:33]  *** The last 200 lines of the pilot log: ***
[2026-01-10 10:58:33] 2026-01-10 09:57:33,922 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 10:58:33] 2026-01-10 09:57:33,923 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-10 10:58:33] 2026-01-10 09:57:33,925 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6963186625/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 10:58:33] 2026-01-10 09:57:33,926 | INFO     | extracted standard info from prmon json
[2026-01-10 10:58:33] 2026-01-10 09:57:33,926 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 10:58:33] 2026-01-10 09:57:33,926 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 10:58:33] 2026-01-10 09:57:33,927 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 10:58:33] 2026-01-10 09:57:33,927 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 10:58:33] 2026-01-10 09:57:33,941 | INFO     | fitting pss+swap vs Time
[2026-01-10 10:58:33] 2026-01-10 09:57:33,942 | INFO     | sum of square deviations: 15327572968.0
[2026-01-10 10:58:33] 2026-01-10 09:57:33,946 | INFO     | sum of deviations: 199724991590.0
[2026-01-10 10:58:33] 2026-01-10 09:57:33,947 | INFO     | mean x: 1768027734.0
[2026-01-10 10:58:33] 2026-01-10 09:57:33,947 | INFO     | mean y: 2454112.659400545
[2026-01-10 10:58:33] 2026-01-10 09:57:33,947 | INFO     | intersect: -23035721927.4259
[2026-01-10 10:58:33] 2026-01-10 09:57:33,947 | INFO     | chi2: 7.719384147364144
[2026-01-10 10:58:33] 2026-01-10 09:57:33,948 | INFO     | sum of square deviations: 14709598590.5
[2026-01-10 10:58:33] 2026-01-10 09:57:33,952 | INFO     | sum of deviations: 220903338748.99997
[2026-01-10 10:58:33] 2026-01-10 09:57:33,953 | INFO     | mean x: 1768027581.5
[2026-01-10 10:58:33] 2026-01-10 09:57:33,953 | INFO     | mean y: 2459272.281767956
[2026-01-10 10:58:33] 2026-01-10 09:57:33,953 | INFO     | intersect: -26549128342.482224
[2026-01-10 10:58:33] 2026-01-10 09:57:33,954 | INFO     | chi2: 6.993694350715555
[2026-01-10 10:58:33] 2026-01-10 09:57:33,954 | INFO     | current chi2=6.993694350715555 (change=9.400876841922456 %)
[2026-01-10 10:58:33] 2026-01-10 09:57:33,954 | INFO     | right removable region: 361
[2026-01-10 10:58:33] 2026-01-10 09:57:33,955 | INFO     | sum of square deviations: 14709598590.5
[2026-01-10 10:58:33] 2026-01-10 09:57:33,959 | INFO     | sum of deviations: 70755258409.00002
[2026-01-10 10:58:33] 2026-01-10 09:57:33,959 | INFO     | mean x: 1768027886.5
[2026-01-10 10:58:33] 2026-01-10 09:57:33,959 | INFO     | mean y: 2485924.983425414
[2026-01-10 10:58:33] 2026-01-10 09:57:33,959 | INFO     | intersect: -8501979320.208111
[2026-01-10 10:58:33] 2026-01-10 09:57:33,960 | INFO     | chi2: 2.926005528685481
[2026-01-10 10:58:33] 2026-01-10 09:57:33,960 | INFO     | current chi2=2.926005528685481 (change=62.09535018820649 %)
[2026-01-10 10:58:33] 2026-01-10 09:57:33,961 | INFO     | sum of square deviations: 14108461738.0
[2026-01-10 10:58:33] 2026-01-10 09:57:33,965 | INFO     | sum of deviations: -10655362392.000008
[2026-01-10 10:58:33] 2026-01-10 09:57:33,965 | INFO     | mean x: 1768028039.0
[2026-01-10 10:58:33] 2026-01-10 09:57:33,965 | INFO     | mean y: 2506526.492997199
[2026-01-10 10:58:33] 2026-01-10 09:57:33,966 | INFO     | intersect: 1337803019.0950828
[2026-01-10 10:58:33] 2026-01-10 09:57:33,966 | INFO     | chi2: 0.9192394890139771
[2026-01-10 10:58:33] 2026-01-10 09:57:33,966 | INFO     | current chi2=0.9192394890139771 (change=68.5838088820376 %)
[2026-01-10 10:58:33] 2026-01-10 09:57:33,967 | INFO     | sum of square deviations: 13523929848.0
[2026-01-10 10:58:33] 2026-01-10 09:57:33,971 | INFO     | sum of deviations: -19942247184.999996
[2026-01-10 10:58:33] 2026-01-10 09:57:33,971 | INFO     | mean x: 1768028191.5
[2026-01-10 10:58:33] 2026-01-10 09:57:33,972 | INFO     | mean y: 2508938.278409091
[2026-01-10 10:58:33] 2026-01-10 09:57:33,972 | INFO     | intersect: 2609625037.017692
[2026-01-10 10:58:33] 2026-01-10 09:57:33,972 | INFO     | chi2: 0.8847241331786033
[2026-01-10 10:58:33] 2026-01-10 09:57:33,972 | INFO     | current chi2=0.8847241331786033 (change=3.754772966987821 %)
[2026-01-10 10:58:33] 2026-01-10 09:57:33,972 | INFO     | left removable region: 30
[2026-01-10 10:58:33] 2026-01-10 09:57:33,973 | INFO     | sum of square deviations: 11244973630.0
[2026-01-10 10:58:33] 2026-01-10 09:57:33,977 | INFO     | sum of deviations: 27020212422.0
[2026-01-10 10:58:33] 2026-01-10 09:57:33,977 | INFO     | mean x: 1768028466.0
[2026-01-10 10:58:33] 2026-01-10 09:57:33,977 | INFO     | mean y: 2508222.7734138975
[2026-01-10 10:58:33] 2026-01-10 09:57:33,977 | INFO     | intersect: -4245834751.7278795
[2026-01-10 10:58:33] 2026-01-10 09:57:33,978 | INFO     | chi2: 0.0025927713715990864
[2026-01-10 10:58:33] 2026-01-10 09:57:33,978 | INFO     | current memory leak: 2.40 B/s (using 331 data points, chi2=0.00)
[2026-01-10 10:58:33] 2026-01-10 09:57:33,979 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-01-10 10:58:33] 2026-01-10 09:57:33,979 | INFO     | ..............................
[2026-01-10 10:58:33] 2026-01-10 09:57:33,979 | INFO     | . Timing measurements:
[2026-01-10 10:58:33] 2026-01-10 09:57:33,979 | INFO     | . get job = 0 s
[2026-01-10 10:58:33] 2026-01-10 09:57:33,979 | INFO     | . initial setup = 11 s
[2026-01-10 10:58:33] 2026-01-10 09:57:33,979 | INFO     | . payload setup = 145 s
[2026-01-10 10:58:33] 2026-01-10 09:57:33,980 | INFO     | . stage-in = 0 s
[2026-01-10 10:58:33] 2026-01-10 09:57:33,980 | INFO     | . payload execution = 22540 s
[2026-01-10 10:58:33] 2026-01-10 09:57:33,980 | INFO     | . stage-out = 8 s
[2026-01-10 10:58:33] 2026-01-10 09:57:33,980 | INFO     | . log creation = 1 s
[2026-01-10 10:58:33] 2026-01-10 09:57:33,980 | INFO     | ..............................
[2026-01-10 10:58:33] 2026-01-10 09:57:34,105 | INFO     | 
[2026-01-10 10:58:33] 2026-01-10 09:57:34,106 | INFO     | job summary report
[2026-01-10 10:58:33] 2026-01-10 09:57:34,106 | INFO     | --------------------------------------------------
[2026-01-10 10:58:33] 2026-01-10 09:57:34,106 | INFO     | PanDA job id: 6963186625
[2026-01-10 10:58:33] 2026-01-10 09:57:34,106 | INFO     | task id: 47898826
[2026-01-10 10:58:33] 2026-01-10 09:57:34,106 | INFO     | errors: (none)
[2026-01-10 10:58:33] 2026-01-10 09:57:34,106 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 10:58:33] 2026-01-10 09:57:34,106 | INFO     | pilot state: finished 
[2026-01-10 10:58:33] 2026-01-10 09:57:34,106 | INFO     | transexitcode: 0
[2026-01-10 10:58:33] 2026-01-10 09:57:34,106 | INFO     | exeerrorcode: 0
[2026-01-10 10:58:33] 2026-01-10 09:57:34,107 | INFO     | exeerrordiag: 
[2026-01-10 10:58:33] 2026-01-10 09:57:34,107 | INFO     | exitcode: 0
[2026-01-10 10:58:33] 2026-01-10 09:57:34,107 | INFO     | exitmsg: OK
[2026-01-10 10:58:33] 2026-01-10 09:57:34,107 | INFO     | cpuconsumptiontime: 84463 s
[2026-01-10 10:58:33] 2026-01-10 09:57:34,107 | INFO     | nevents: 400
[2026-01-10 10:58:33] 2026-01-10 09:57:34,107 | INFO     | neventsw: 0
[2026-01-10 10:58:33] 2026-01-10 09:57:34,107 | INFO     | pid: 28842
[2026-01-10 10:58:33] 2026-01-10 09:57:34,107 | INFO     | pgrp: 28842
[2026-01-10 10:58:33] 2026-01-10 09:57:34,107 | INFO     | corecount: 8
[2026-01-10 10:58:33] 2026-01-10 09:57:34,107 | INFO     | event service: False
[2026-01-10 10:58:33] 2026-01-10 09:57:34,108 | INFO     | sizes: {0: 2283743, 1: 2283998, 2: 2283998, 12: 2284026, 23: 2284054, 34: 2284082, 44: 2284238, 55: 2284266, 66: 2284294, 77: 2284322, 88: 2284378, 98: 2284686, 10
[2026-01-10 10:58:33] 2026-01-10 09:57:34,108 | INFO     | --------------------------------------------------
[2026-01-10 10:58:33] 2026-01-10 09:57:34,108 | INFO     | 
[2026-01-10 10:58:33] 2026-01-10 09:57:34,108 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2026-01-10 10:58:33] 2026-01-10 09:57:34,466 | INFO     | time since job start (23031s) is within the limit (349056.0s)
[2026-01-10 10:58:33] 2026-01-10 09:57:34,633 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 10:58:33] 2026-01-10 09:57:34,633 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 10:58:33] 2026-01-10 09:57:34,633 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 10:58:33] 2026-01-10 09:57:34,633 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 10:58:33] 2026-01-10 09:57:34,633 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 10:58:33] 2026-01-10 09:57:34,633 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 10:58:33] 2026-01-10 09:57:34,634 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 10:58:33] 2026-01-10 09:57:34,634 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 10:58:33] 2026-01-10 09:57:34,634 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 10:58:33] 2026-01-10 09:57:34,634 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 10:58:33] 2026-01-10 09:57:34,634 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 10:58:33] 2026-01-10 09:57:34,634 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 10:58:33] 2026-01-10 09:57:34,634 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 10:58:33] 2026-01-10 09:57:34,634 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 10:58:33] 2026-01-10 09:57:34,634 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 10:58:33] 2026-01-10 09:57:34,635 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 10:58:33] 2026-01-10 09:57:34,635 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 10:58:33] 2026-01-10 09:57:34,635 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 10:58:33] 2026-01-10 09:57:34,635 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 10:58:33] 2026-01-10 09:57:34,635 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 10:58:33] 2026-01-10 09:57:34,635 | INFO     | job 6963186625 has completed (purged errors)
[2026-01-10 10:58:33] 2026-01-10 09:57:34,635 | INFO     | overall cleanup function is called
[2026-01-10 10:58:33] 2026-01-10 09:57:35,644 | INFO     | --- collectZombieJob: --- 10, [28842]
[2026-01-10 10:58:33] 2026-01-10 09:57:35,644 | INFO     | zombie collector waiting for pid 28842
[2026-01-10 10:58:33] 2026-01-10 09:57:35,645 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 10:58:33] 2026-01-10 09:57:35,645 | INFO     | collected zombie processes
[2026-01-10 10:58:33] 2026-01-10 09:57:35,645 | INFO     | will attempt to kill all subprocesses of pid=28842
[2026-01-10 10:58:33] 2026-01-10 09:57:35,746 | INFO     | process IDs to be killed: [28842] (in reverse order)
[2026-01-10 10:58:33] 2026-01-10 09:57:36,035 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 10:58:33] 2026-01-10 09:57:36,035 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 10:58:33] 2026-01-10 09:57:36,037 | INFO     | did not find any defunct processes belonging to 28842
[2026-01-10 10:58:33] 2026-01-10 09:57:36,039 | INFO     | did not find any defunct processes belonging to 28842
[2026-01-10 10:58:33] 2026-01-10 09:57:36,040 | INFO     | ready for new job
[2026-01-10 10:58:33] 2026-01-10 09:57:36,040 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 10:58:33] 2026-01-10 09:57:36,042 | INFO     | ***************************************
[2026-01-10 10:58:33] 2026-01-10 09:57:36,042 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 10:58:33] 2026-01-10 09:57:36,042 | INFO     | ***************************************
[2026-01-10 10:58:33] 2026-01-10 09:57:36,042 | INFO     | 
[2026-01-10 10:58:33] 2026-01-10 09:57:36,043 | INFO     | pilot is running in a VM
[2026-01-10 10:58:33] 2026-01-10 09:57:36,043 | INFO     | architecture information:
[2026-01-10 10:58:33] 2026-01-10 09:57:36,055 | INFO     | executing command: cat /etc/os-release
[2026-01-10 10:58:33] 2026-01-10 09:57:36,260 | INFO     | cat /etc/os-release:
[2026-01-10 10:58:33] NAME="CentOS Linux"
[2026-01-10 10:58:33] VERSION="7 (Core)"
[2026-01-10 10:58:33] ID="centos"
[2026-01-10 10:58:33] ID_LIKE="rhel fedora"
[2026-01-10 10:58:33] VERSION_ID="7"
[2026-01-10 10:58:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 10:58:33] ANSI_COLOR="0;31"
[2026-01-10 10:58:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 10:58:33] HOME_URL="https://www.centos.org/"
[2026-01-10 10:58:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 10:58:33] 
[2026-01-10 10:58:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 10:58:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 10:58:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 10:58:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 10:58:33] 
[2026-01-10 10:58:33] 2026-01-10 09:57:36,260 | INFO     | ***************************************
[2026-01-10 10:58:33] 2026-01-10 09:57:36,763 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2026-01-10 10:58:33] 2026-01-10 09:57:36,913 | INFO     | sufficient remaining disk space (496841523200 B)
[2026-01-10 10:58:33] 2026-01-10 09:57:36,913 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 10:58:33] 2026-01-10 09:57:36,913 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 10:58:33] 2026-01-10 09:57:36,914 | INFO     | update_server=False
[2026-01-10 10:58:33] 2026-01-10 09:57:36,914 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 10:58:33] 2026-01-10 09:57:36,914 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 10:58:33] 2026-01-10 09:57:36,925 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 10:58:33] 2026-01-10 09:57:37,481 | INFO     | all data control threads have been joined
[2026-01-10 10:58:33] 2026-01-10 09:57:37,636 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:58:33] 2026-01-10 09:57:37,637 | INFO     | aborting loop
[2026-01-10 10:58:33] 2026-01-10 09:57:37,919 | INFO     | [job] retrieve thread has finished
[2026-01-10 10:58:33] 2026-01-10 09:57:37,964 | INFO     | [payload] validate_post thread has finished
[2026-01-10 10:58:33] 2026-01-10 09:57:38,120 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 10:58:33] 2026-01-10 09:57:38,164 | INFO     | all payload control threads have been joined
[2026-01-10 10:58:33] 2026-01-10 09:57:38,409 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 10:58:33] 2026-01-10 09:57:38,487 | INFO     | [data] control thread has finished
[2026-01-10 10:58:33] 2026-01-10 09:57:38,495 | INFO     | [data] copytool_in thread has finished
[2026-01-10 10:58:33] 2026-01-10 09:57:38,517 | INFO     | [job] validate thread has finished
[2026-01-10 10:58:33] 2026-01-10 09:57:38,526 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 10:58:33] 2026-01-10 09:57:38,541 | INFO     | all job control threads have been joined
[2026-01-10 10:58:33] 2026-01-10 09:57:38,642 | INFO     | [job] job monitor thread has finished
[2026-01-10 10:58:33] 2026-01-10 09:57:38,839 | INFO     | [payload] failed_post thread has finished
[2026-01-10 10:58:33] 2026-01-10 09:57:38,921 | INFO     | [data] copytool_out thread has finished
[2026-01-10 10:58:33] 2026-01-10 09:57:39,050 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 10:58:33] 2026-01-10 09:57:39,119 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:58:33] 2026-01-10 09:57:39,170 | INFO     | [payload] control thread has finished
[2026-01-10 10:58:33] 2026-01-10 09:57:39,547 | INFO     | [job] control thread has finished
[2026-01-10 10:58:33] 2026-01-10 09:57:40,125 | INFO     | [job] queue monitor thread has finished
[2026-01-10 10:58:33] 2026-01-10 09:57:40,936 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 10:58:33] 2026-01-10 09:58:07,660 | INFO     | PID=22385 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 10:58:33] 2026-01-10 09:58:07,661 | INFO     | .. there are 2 such processes running
[2026-01-10 10:58:33] 2026-01-10 09:58:07,661 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 10:58:33] 2026-01-10 09:58:07,661 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 10:58:33] 2026-01-10 09:58:07,661 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 10:58:33] 2026-01-10 09:58:22,811 | INFO     | [monitor] cgroup control has ended
[2026-01-10 10:58:33] 2026-01-10 09:58:22,987 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140310352250688)>', '<ExcThread(monitor, started 140309904209664)>']
[2026-01-10 10:58:33] 2026-01-10 09:58:23,760 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 10:58:33] 2026-01-10 09:58:23,760 | INFO     | [monitor] control thread has ended
[2026-01-10 10:58:33] 2026-01-10 09:58:28,013 | INFO     | all workflow threads have been joined
[2026-01-10 10:58:33] 2026-01-10 09:58:28,014 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 10:58:33] 2026-01-10 09:58:28,014 | INFO     | traces error code: 0
[2026-01-10 10:58:33] 2026-01-10 09:58:28,014 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 10:58:33] 2026-01-10 09:58:28,507 [wrapper] ==== pilot stdout END ====
[2026-01-10 10:58:33] 2026-01-10 09:58:28,597 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 10:58:33] 2026-01-10 09:58:28,690 [wrapper] pilotpid: 22385
[2026-01-10 10:58:33] 2026-01-10 09:58:28,788 [wrapper] Pilot exit status: 0
[2026-01-10 10:58:33] 2026-01-10 09:58:29,251 [wrapper] pandaids: 6963186625
[2026-01-10 10:58:33] 2026-01-10 09:58:29,990 [wrapper] cleanup supervisor_pilot 30390 22386
[2026-01-10 10:58:33] 2026-01-10 09:58:30,100 [wrapper] Test setup, not cleaning
[2026-01-10 10:58:33] 2026-01-10 09:58:30,195 [wrapper] apfmon messages muted
[2026-01-10 10:58:33] 2026-01-10 09:58:30,309 [wrapper] ==== wrapper stdout END ====
[2026-01-10 10:58:33] 2026-01-10 09:58:30,391 [wrapper] ==== wrapper stderr END ====
[2026-01-10 10:58:33]  *** Error codes and diagnostics ***
[2026-01-10 10:58:33]     "exeErrorCode": 0,
[2026-01-10 10:58:33]     "exeErrorDiag": "",
[2026-01-10 10:58:33]     "pilotErrorCode": 0,
[2026-01-10 10:58:33]     "pilotErrorDiag": "",
[2026-01-10 10:58:33]  *** Listing of results directory ***
[2026-01-10 10:58:33] total 450136
[2026-01-10 10:58:33] -rw-r--r--. 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-10 10:58:33] -rwx------. 1 boinc boinc     36322 Jan  9 02:01 runpilot2-wrapper.sh
[2026-01-10 10:58:33] -rw-r--r--. 1 boinc boinc      5112 Jan  9 02:06 queuedata.json
[2026-01-10 10:58:33] -rw-r--r--. 1 boinc boinc       100 Jan 10 04:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 10:58:33] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 04:29 run_atlas
[2026-01-10 10:58:33] -rw-r--r--. 1 boinc boinc       105 Jan 10 04:29 job.xml
[2026-01-10 10:58:33] -rw-r--r--. 2 boinc boinc 225545703 Jan 10 04:29 EVNT.47898824._001403.pool.root.1
[2026-01-10 10:58:33] -rw-r--r--. 2 boinc boinc     15847 Jan 10 04:29 start_atlas.sh
[2026-01-10 10:58:33] drwxrwx--x. 2 boinc boinc        68 Jan 10 04:29 shared
[2026-01-10 10:58:33] -rw-r--r--. 2 boinc boinc    592398 Jan 10 04:29 input.tar.gz
[2026-01-10 10:58:33] -rw-r--r--. 1 boinc boinc      6392 Jan 10 04:29 init_data.xml
[2026-01-10 10:58:33] -rw-r--r--. 1 boinc boinc         0 Jan 10 04:29 boinc_lockfile
[2026-01-10 10:58:33] -rw-r--r--. 1 boinc boinc      2519 Jan 10 04:29 pandaJob.out
[2026-01-10 10:58:33] -rw-------. 1 boinc boinc    989374 Jan 10 04:33 agis_schedconf.cvmfs.json
[2026-01-10 10:58:33] drwx------. 5 boinc boinc      4096 Jan 10 04:33 pilot3
[2026-01-10 10:58:33] -rw-------. 1 boinc boinc 224264970 Jan 10 10:54 HITS.47898826._036601.pool.root.1
[2026-01-10 10:58:33] -rw-r--r--. 1 boinc boinc       531 Jan 10 10:54 boinc_task_state.xml
[2026-01-10 10:58:33] -rw-------. 1 boinc boinc      1012 Jan 10 10:55 memory_monitor_summary.json
[2026-01-10 10:58:33] -rw-------. 1 boinc boinc   1516240 Jan 10 10:55 agis_ddmendpoints.agis.ALL.json
[2026-01-10 10:58:33] -rw-------. 1 boinc boinc    556823 Jan 10 10:55 log.47898826._036601.job.log.tgz.1
[2026-01-10 10:58:33] -rw-------. 1 boinc boinc        95 Jan 10 10:57 pilot_heartbeat.json
[2026-01-10 10:58:33] -rw-------. 1 boinc boinc      7779 Jan 10 10:57 heartbeat.json
[2026-01-10 10:58:33] -rw-r--r--. 1 boinc boinc      8192 Jan 10 10:58 boinc_mmap_file
[2026-01-10 10:58:33] -rw-r--r--. 1 boinc boinc        28 Jan 10 10:58 wrapper_checkpoint.txt
[2026-01-10 10:58:33] -rw-------. 1 boinc boinc      4885 Jan 10 10:58 pilotlog.txt
[2026-01-10 10:58:33] -rw-------. 1 boinc boinc   3059064 Jan 10 10:58 log.47898826._036601.job.log.1
[2026-01-10 10:58:33] -rw-------. 1 boinc boinc       357 Jan 10 10:58 output.list
[2026-01-10 10:58:33] -rw-r--r--. 1 boinc boinc       620 Jan 10 10:58 runtime_log
[2026-01-10 10:58:33] -rw-------. 1 boinc boinc   3635200 Jan 10 10:58 result.tar.gz
[2026-01-10 10:58:33] -rw-------. 1 boinc boinc       657 Jan 10 10:58 ULiLDmj3Fy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmo1lKDm5p3mfn.diag
[2026-01-10 10:58:33] -rw-r--r--. 1 boinc boinc      8833 Jan 10 10:58 runtime_log.err
[2026-01-10 10:58:33] -rw-r--r--. 1 boinc boinc     20782 Jan 10 10:58 stderr.txt
[2026-01-10 10:58:33] HITS file was successfully produced:
[2026-01-10 10:58:33] -rw-------. 1 boinc boinc 224264970 Jan 10 10:54 shared/HITS.pool.root.1
[2026-01-10 10:58:33]  *** Contents of shared directory: ***
[2026-01-10 10:58:33] total 443420
[2026-01-10 10:58:33] -rw-r--r--. 2 boinc boinc 225545703 Jan 10 04:29 ATLAS.root_0
[2026-01-10 10:58:33] -rw-r--r--. 2 boinc boinc     15847 Jan 10 04:29 start_atlas.sh
[2026-01-10 10:58:33] -rw-r--r--. 2 boinc boinc    592398 Jan 10 04:29 input.tar.gz
[2026-01-10 10:58:33] -rw-------. 1 boinc boinc 224264970 Jan 10 10:54 HITS.pool.root.1
[2026-01-10 10:58:33] -rw-------. 1 boinc boinc   3635200 Jan 10 10:58 result.tar.gz
10:58:35 (18646): run_atlas exited; CPU time 84684.012510
10:58:35 (18646): called boinc_finish(0)

</stderr_txt>
]]>

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