Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:34:15 (3284306): wrapper (7.7.26015): starting
13:34:15 (3284306): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 13:34:15] Arguments: --nthreads 8
[2026-01-09 13:34:15] Threads: 8
[2026-01-09 13:34:15] Checking for CVMFS
[2026-01-09 13:34:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 13:34:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 13:34:16] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 13:34:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 13:34:18] 2.13.3.0 10749 50090 488292 154952 1 157 24245795 32935937 59499 16776704 0 525606520 99.784 283681560 29008 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 13:34:18] CVMFS is ok
[2026-01-09 13:34:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 13:34:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 13:34:18] Further information can be found at the LHC@home message board.
[2026-01-09 13:34:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 13:34:18] Checking for apptainer binary...
[2026-01-09 13:34:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 13:34:18] Running /usr/bin/apptainer --version
[2026-01-09 13:34:18] apptainer version 1.4.5-2.el9
[2026-01-09 13:34:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 13:34:19] lc-12-33.aglt2.org
[2026-01-09 13:34:19] apptainer works
[2026-01-09 13:34:19] Set ATHENA_PROC_NUMBER=8
[2026-01-09 13:34:19] Set ATHENA_CORE_NUMBER=8
[2026-01-09 13:34:19] Starting ATLAS job with PandaID=6963167162
[2026-01-09 13:34:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:20:06 (3284306): BOINC client no longer exists - exiting
15:20:06 (3284306): timer handler: client dead, exiting
15:28:46 (623420): wrapper (7.7.26015): starting
15:28:46 (623420): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 15:28:46] Arguments: --nthreads 8
[2026-01-09 15:28:46] Threads: 8
[2026-01-09 15:28:46] This job has been restarted, cleaning up previous attempt
[2026-01-09 15:28:47] Checking for CVMFS
[2026-01-09 15:28:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 15:28:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 15:28:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 15:28:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 15:28:49] 2.13.3.0 10749 50205 496736 154956 2 341 25759242 32935937 53854 16776704 0 527086548 99.784 284145527 29012 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 15:28:49] CVMFS is ok
[2026-01-09 15:28:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 15:28:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 15:28:49] Further information can be found at the LHC@home message board.
[2026-01-09 15:28:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 15:28:49] Checking for apptainer binary...
[2026-01-09 15:28:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 15:28:49] Running /usr/bin/apptainer --version
[2026-01-09 15:28:49] apptainer version 1.4.5-2.el9
[2026-01-09 15:28:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 15:28:50] lc-12-33.aglt2.org
[2026-01-09 15:28:50] apptainer works
[2026-01-09 15:28:50] Set ATHENA_PROC_NUMBER=8
[2026-01-09 15:28:50] Set ATHENA_CORE_NUMBER=8
[2026-01-09 15:28:50] Starting ATLAS job with PandaID=6963167162
[2026-01-09 15:28:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 23:42:25]  *** The last 200 lines of the pilot log: ***
[2026-01-09 23:42:25] 2026-01-10 04:41:28,929 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6963167162/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 23:42:25] 2026-01-10 04:41:28,930 | INFO     | extracted standard info from prmon json
[2026-01-09 23:42:25] 2026-01-10 04:41:28,930 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 23:42:25] 2026-01-10 04:41:28,930 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 23:42:25] 2026-01-10 04:41:28,930 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 23:42:25] 2026-01-10 04:41:28,930 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 23:42:25] 2026-01-10 04:41:28,978 | INFO     | fitting pss+swap vs Time
[2026-01-09 23:42:25] 2026-01-10 04:41:28,979 | INFO     | sum of square deviations: 34939552345.316795
[2026-01-09 23:42:25] 2026-01-10 04:41:29,007 | INFO     | sum of deviations: 145630189486.4536
[2026-01-09 23:42:25] 2026-01-10 04:41:29,007 | INFO     | mean x: 1768005351.0745342
[2026-01-09 23:42:25] 2026-01-10 04:41:29,030 | INFO     | mean y: 2489676.4596273294
[2026-01-09 23:42:25] 2026-01-10 04:41:29,031 | INFO     | intersect: -7366664677.475867
[2026-01-09 23:42:25] 2026-01-10 04:41:29,031 | INFO     | chi2: 2.582943162768059
[2026-01-09 23:42:25] 2026-01-10 04:41:29,032 | INFO     | sum of square deviations: 33865673422.788628
[2026-01-09 23:42:25] 2026-01-10 04:41:29,079 | INFO     | sum of deviations: 173295834193.29108
[2026-01-09 23:42:25] 2026-01-10 04:41:29,079 | INFO     | mean x: 1768005198.5753138
[2026-01-09 23:42:25] 2026-01-10 04:41:29,079 | INFO     | mean y: 2493569.228033473
[2026-01-09 23:42:25] 2026-01-10 04:41:29,079 | INFO     | intersect: -9044659632.781292
[2026-01-09 23:42:25] 2026-01-10 04:41:29,080 | INFO     | chi2: 1.8999279978914891
[2026-01-09 23:42:25] 2026-01-10 04:41:29,080 | INFO     | current chi2=1.8999279978914891 (change=26.44329053468617 %)
[2026-01-09 23:42:25] 2026-01-10 04:41:29,081 | INFO     | sum of square deviations: 32814027475.260147
[2026-01-09 23:42:25] 2026-01-10 04:41:29,092 | INFO     | sum of deviations: 170968734310.71906
[2026-01-09 23:42:25] 2026-01-10 04:41:29,093 | INFO     | mean x: 1768005046.07611
[2026-01-09 23:42:25] 2026-01-10 04:41:29,093 | INFO     | mean y: 2493231.868921776
[2026-01-09 23:42:25] 2026-01-10 04:41:29,093 | INFO     | intersect: -9209225299.496777
[2026-01-09 23:42:25] 2026-01-10 04:41:29,111 | INFO     | chi2: 1.899679067634686
[2026-01-09 23:42:25] 2026-01-10 04:41:29,112 | INFO     | current chi2=1.899679067634686 (change=0.013102088978078609 %)
[2026-01-09 23:42:25] 2026-01-10 04:41:29,112 | INFO     | right removable region: 472
[2026-01-09 23:42:25] 2026-01-10 04:41:29,112 | INFO     | sum of square deviations: 33865651462.78861
[2026-01-09 23:42:25] 2026-01-10 04:41:29,133 | INFO     | sum of deviations: 54260227806.61922
[2026-01-09 23:42:25] 2026-01-10 04:41:29,133 | INFO     | mean x: 1768005503.5753138
[2026-01-09 23:42:25] 2026-01-10 04:41:29,133 | INFO     | mean y: 2502607.2050209204
[2026-01-09 23:42:25] 2026-01-10 04:41:29,134 | INFO     | intersect: -2830231364.9367237
[2026-01-09 23:42:25] 2026-01-10 04:41:29,134 | INFO     | chi2: 0.8790016541757552
[2026-01-09 23:42:25] 2026-01-10 04:41:29,134 | INFO     | current chi2=0.8790016541757552 (change=65.96898968408749 %)
[2026-01-09 23:42:25] 2026-01-10 04:41:29,135 | INFO     | sum of square deviations: 32814041991.555954
[2026-01-09 23:42:25] 2026-01-10 04:41:29,192 | INFO     | sum of deviations: 33345656061.896446
[2026-01-09 23:42:25] 2026-01-10 04:41:29,192 | INFO     | mean x: 1768005656.0718815
[2026-01-09 23:42:25] 2026-01-10 04:41:29,192 | INFO     | mean y: 2505640.1501057083
[2026-01-09 23:42:25] 2026-01-10 04:41:29,192 | INFO     | intersect: -1794143140.2114093
[2026-01-09 23:42:25] 2026-01-10 04:41:29,193 | INFO     | chi2: 0.8220538719461336
[2026-01-09 23:42:25] 2026-01-10 04:41:29,193 | INFO     | current chi2=0.8220538719461336 (change=6.478688857875002 %)
[2026-01-09 23:42:25] 2026-01-10 04:41:29,193 | INFO     | left removable region: 20
[2026-01-09 23:42:25] 2026-01-10 04:41:29,194 | INFO     | sum of square deviations: 28634649194.590633
[2026-01-09 23:42:25] 2026-01-10 04:41:29,247 | INFO     | sum of deviations: 19284376153.097366
[2026-01-09 23:42:25] 2026-01-10 04:41:29,247 | INFO     | mean x: 1768005625.5730088
[2026-01-09 23:42:25] 2026-01-10 04:41:29,247 | INFO     | mean y: 2516030.663716814
[2026-01-09 23:42:25] 2026-01-10 04:41:29,247 | INFO     | intersect: -1188170305.0635245
[2026-01-09 23:42:25] 2026-01-10 04:41:29,248 | INFO     | chi2: 0.008225330023875438
[2026-01-09 23:42:25] 2026-01-10 04:41:29,276 | INFO     | current memory leak: 0.67 B/s (using 452 data points, chi2=0.01)
[2026-01-09 23:42:25] 2026-01-10 04:41:29,305 | INFO     | could have reported an average CPU frequency of 2928 MHz (19 samples)
[2026-01-09 23:42:25] 2026-01-10 04:41:29,305 | INFO     | ..............................
[2026-01-09 23:42:25] 2026-01-10 04:41:29,305 | INFO     | . Timing measurements:
[2026-01-09 23:42:25] 2026-01-10 04:41:29,305 | INFO     | . get job = 0 s
[2026-01-09 23:42:25] 2026-01-10 04:41:29,305 | INFO     | . initial setup = 1 s
[2026-01-09 23:42:25] 2026-01-10 04:41:29,305 | INFO     | . payload setup = 20 s
[2026-01-09 23:42:25] 2026-01-10 04:41:29,305 | INFO     | . stage-in = 0 s
[2026-01-09 23:42:25] 2026-01-10 04:41:29,305 | INFO     | . payload execution = 29433 s
[2026-01-09 23:42:25] 2026-01-10 04:41:29,306 | INFO     | . stage-out = 4 s
[2026-01-09 23:42:25] 2026-01-10 04:41:29,306 | INFO     | . log creation = 0 s
[2026-01-09 23:42:25] 2026-01-10 04:41:29,306 | INFO     | ..............................
[2026-01-09 23:42:25] 2026-01-10 04:41:29,282 | INFO     | monitor loop #1420: job 0:6963167162 is in state 'finished'
[2026-01-09 23:42:25] 2026-01-10 04:41:29,316 | WARNING  | exception caught: deque index out of range
[2026-01-09 23:42:25] 2026-01-10 04:41:30,150 | INFO     | 
[2026-01-09 23:42:25] 2026-01-10 04:41:30,150 | INFO     | job summary report
[2026-01-09 23:42:25] 2026-01-10 04:41:30,151 | INFO     | --------------------------------------------------
[2026-01-09 23:42:25] 2026-01-10 04:41:30,151 | INFO     | PanDA job id: 6963167162
[2026-01-09 23:42:25] 2026-01-10 04:41:30,151 | INFO     | task id: 47898826
[2026-01-09 23:42:25] 2026-01-10 04:41:30,151 | INFO     | errors: (none)
[2026-01-09 23:42:25] 2026-01-10 04:41:30,151 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 23:42:25] 2026-01-10 04:41:30,151 | INFO     | pilot state: finished 
[2026-01-09 23:42:25] 2026-01-10 04:41:30,151 | INFO     | transexitcode: 0
[2026-01-09 23:42:25] 2026-01-10 04:41:30,151 | INFO     | exeerrorcode: 0
[2026-01-09 23:42:25] 2026-01-10 04:41:30,151 | INFO     | exeerrordiag: 
[2026-01-09 23:42:25] 2026-01-10 04:41:30,151 | INFO     | exitcode: 0
[2026-01-09 23:42:25] 2026-01-10 04:41:30,151 | INFO     | exitmsg: OK
[2026-01-09 23:42:25] 2026-01-10 04:41:30,151 | INFO     | cpuconsumptiontime: 60168 s
[2026-01-09 23:42:25] 2026-01-10 04:41:30,151 | INFO     | nevents: 400
[2026-01-09 23:42:25] 2026-01-10 04:41:30,151 | INFO     | neventsw: 0
[2026-01-09 23:42:25] 2026-01-10 04:41:30,152 | INFO     | pid: 706011
[2026-01-09 23:42:25] 2026-01-10 04:41:30,152 | INFO     | pgrp: 706011
[2026-01-09 23:42:25] 2026-01-10 04:41:30,152 | INFO     | corecount: 8
[2026-01-09 23:42:25] 2026-01-10 04:41:30,152 | INFO     | event service: False
[2026-01-09 23:42:25] 2026-01-10 04:41:30,152 | INFO     | sizes: {0: 2283800, 1: 2283828, 2: 2283999, 13: 2284027, 16: 2284345, 24: 2284373, 29458: 2321374, 29464: 2330372, 29465: 2330428, 29488: 2330622}
[2026-01-09 23:42:25] 2026-01-10 04:41:30,152 | INFO     | --------------------------------------------------
[2026-01-09 23:42:25] 2026-01-10 04:41:30,152 | INFO     | 
[2026-01-09 23:42:25] 2026-01-10 04:41:30,152 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-09 23:42:25] 2026-01-10 04:41:30,204 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 23:42:25] 2026-01-10 04:41:30,205 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 23:42:25] 2026-01-10 04:41:30,205 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 23:42:25] 2026-01-10 04:41:30,205 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 23:42:25] 2026-01-10 04:41:30,205 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 23:42:25] 2026-01-10 04:41:30,205 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 23:42:25] 2026-01-10 04:41:30,205 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 23:42:25] 2026-01-10 04:41:30,205 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 23:42:25] 2026-01-10 04:41:30,205 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 23:42:25] 2026-01-10 04:41:30,205 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 23:42:25] 2026-01-10 04:41:30,205 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 23:42:25] 2026-01-10 04:41:30,206 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 23:42:25] 2026-01-10 04:41:30,206 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 23:42:25] 2026-01-10 04:41:30,206 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 23:42:25] 2026-01-10 04:41:30,206 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 23:42:25] 2026-01-10 04:41:30,206 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 23:42:25] 2026-01-10 04:41:30,206 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 23:42:25] 2026-01-10 04:41:30,206 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 23:42:25] 2026-01-10 04:41:30,206 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 23:42:25] 2026-01-10 04:41:30,206 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 23:42:25] 2026-01-10 04:41:30,206 | INFO     | job 6963167162 has completed (purged errors)
[2026-01-09 23:42:25] 2026-01-10 04:41:30,206 | INFO     | overall cleanup function is called
[2026-01-09 23:42:25] 2026-01-10 04:41:31,220 | INFO     | --- collectZombieJob: --- 10, [706011]
[2026-01-09 23:42:25] 2026-01-10 04:41:31,220 | INFO     | zombie collector waiting for pid 706011
[2026-01-09 23:42:25] 2026-01-10 04:41:31,221 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 23:42:25] 2026-01-10 04:41:31,221 | INFO     | collected zombie processes
[2026-01-09 23:42:25] 2026-01-10 04:41:31,221 | INFO     | will attempt to kill all subprocesses of pid=706011
[2026-01-09 23:42:25] 2026-01-10 04:41:32,798 | INFO     | process IDs to be killed: [706011] (in reverse order)
[2026-01-09 23:42:25] 2026-01-10 04:41:33,096 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 23:42:25] 2026-01-10 04:41:33,096 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 23:42:25] 2026-01-10 04:41:33,229 | INFO     | did not find any defunct processes belonging to 706011
[2026-01-09 23:42:25] 2026-01-10 04:41:33,416 | INFO     | did not find any defunct processes belonging to 706011
[2026-01-09 23:42:25] 2026-01-10 04:41:33,416 | INFO     | ready for new job
[2026-01-09 23:42:25] 2026-01-10 04:41:33,416 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 23:42:25] 2026-01-10 04:41:33,419 | INFO     | ***************************************
[2026-01-09 23:42:25] 2026-01-10 04:41:33,419 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 23:42:25] 2026-01-10 04:41:33,419 | INFO     | ***************************************
[2026-01-09 23:42:25] 2026-01-10 04:41:33,419 | INFO     | 
[2026-01-09 23:42:25] 2026-01-10 04:41:33,463 | INFO     | architecture information:
[2026-01-09 23:42:25] 2026-01-10 04:41:33,464 | INFO     | executing command: cat /etc/os-release
[2026-01-09 23:42:25] 2026-01-10 04:41:33,551 | INFO     | cat /etc/os-release:
[2026-01-09 23:42:25] NAME="CentOS Linux"
[2026-01-09 23:42:25] VERSION="7 (Core)"
[2026-01-09 23:42:25] ID="centos"
[2026-01-09 23:42:25] ID_LIKE="rhel fedora"
[2026-01-09 23:42:25] VERSION_ID="7"
[2026-01-09 23:42:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 23:42:25] ANSI_COLOR="0;31"
[2026-01-09 23:42:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 23:42:25] HOME_URL="https://www.centos.org/"
[2026-01-09 23:42:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 23:42:25] 
[2026-01-09 23:42:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 23:42:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 23:42:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 23:42:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 23:42:25] 
[2026-01-09 23:42:25] 2026-01-10 04:41:33,551 | INFO     | ***************************************
[2026-01-09 23:42:25] 2026-01-10 04:41:34,053 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-09 23:42:25] 2026-01-10 04:41:34,102 | INFO     | sufficient remaining disk space (74574725120 B)
[2026-01-09 23:42:25] 2026-01-10 04:41:34,102 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 23:42:25] 2026-01-10 04:41:34,102 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 23:42:25] 2026-01-10 04:41:34,102 | INFO     | update_server=False
[2026-01-09 23:42:25] 2026-01-10 04:41:34,102 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 23:42:25] 2026-01-10 04:41:34,103 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 23:42:25] 2026-01-10 04:41:34,126 | INFO     | all payload control threads have been joined
[2026-01-09 23:42:25] 2026-01-10 04:41:34,360 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 23:42:25] 2026-01-10 04:41:34,360 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 23:42:25] 2026-01-10 04:41:34,360 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:42:25] 2026-01-10 04:41:34,361 | INFO     | will abort loop
[2026-01-09 23:42:25] 2026-01-10 04:41:34,430 | INFO     | all data control threads have been joined
[2026-01-09 23:42:25] 2026-01-10 04:41:34,712 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 23:42:25] 2026-01-10 04:41:34,783 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:42:25] 2026-01-10 04:41:35,108 | INFO     | [job] retrieve thread has finished
[2026-01-09 23:42:25] 2026-01-10 04:41:35,134 | INFO     | [payload] control thread has finished
[2026-01-09 23:42:25] 2026-01-10 04:41:35,248 | INFO     | all job control threads have been joined
[2026-01-09 23:42:25] 2026-01-10 04:41:35,260 | INFO     | [payload] failed_post thread has finished
[2026-01-09 23:42:25] 2026-01-10 04:41:35,367 | INFO     | [job] job monitor thread has finished
[2026-01-09 23:42:25] 2026-01-10 04:41:35,436 | INFO     | [data] control thread has finished
[2026-01-09 23:42:25] 2026-01-10 04:41:35,513 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 23:42:25] 2026-01-10 04:41:35,774 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 23:42:25] 2026-01-10 04:41:35,789 | INFO     | [job] queue monitor thread has finished
[2026-01-09 23:42:25] 2026-01-10 04:41:35,815 | INFO     | [data] copytool_in thread has finished
[2026-01-09 23:42:25] 2026-01-10 04:41:36,008 | INFO     | [payload] validate_post thread has finished
[2026-01-09 23:42:25] 2026-01-10 04:41:36,110 | INFO     | [data] copytool_out thread has finished
[2026-01-09 23:42:25] 2026-01-10 04:41:36,254 | INFO     | [job] control thread has finished
[2026-01-09 23:42:25] 2026-01-10 04:41:36,319 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 23:42:25] 2026-01-10 04:41:36,434 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 23:42:25] 2026-01-10 04:41:36,548 | INFO     | [job] validate thread has finished
[2026-01-09 23:42:25] 2026-01-10 04:41:38,726 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 23:42:25] 2026-01-10 04:42:02,674 | INFO     | PID=654544 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 23:42:25] 2026-01-10 04:42:02,678 | INFO     | .. there are 90 such processes running
[2026-01-09 23:42:25] 2026-01-10 04:42:02,679 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 23:42:25] 2026-01-10 04:42:02,679 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 23:42:25] 2026-01-10 04:42:02,679 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 23:42:25] 2026-01-10 04:42:18,413 | INFO     | [monitor] cgroup control has ended
[2026-01-09 23:42:25] 2026-01-10 04:42:19,300 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139798943459136)>', '<ExcThread(monitor, started 139798408840960)>']
[2026-01-09 23:42:25] 2026-01-10 04:42:19,804 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 23:42:25] 2026-01-10 04:42:19,805 | INFO     | [monitor] control thread has ended
[2026-01-09 23:42:25] 2026-01-10 04:42:24,328 | INFO     | all workflow threads have been joined
[2026-01-09 23:42:25] 2026-01-10 04:42:24,338 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 23:42:25] 2026-01-10 04:42:24,339 | INFO     | traces error code: 0
[2026-01-09 23:42:25] 2026-01-10 04:42:24,339 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 23:42:25] 2026-01-10 04:42:24,857 [wrapper] ==== pilot stdout END ====
[2026-01-09 23:42:25] 2026-01-10 04:42:24,875 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 23:42:25] 2026-01-10 04:42:24,888 [wrapper] pilotpid: 654544
[2026-01-09 23:42:25] 2026-01-10 04:42:24,901 [wrapper] Pilot exit status: 0
[2026-01-09 23:42:25] 2026-01-10 04:42:24,996 [wrapper] pandaids: 6963167162 6963167162
[2026-01-09 23:42:25] 2026-01-10 04:42:25,155 [wrapper] cleanup supervisor_pilot 2006082 654545
[2026-01-09 23:42:25] 2026-01-10 04:42:25,160 [wrapper] Test setup, not cleaning
[2026-01-09 23:42:25] 2026-01-10 04:42:25,164 [wrapper] apfmon messages muted
[2026-01-09 23:42:25] 2026-01-10 04:42:25,170 [wrapper] ==== wrapper stdout END ====
[2026-01-09 23:42:25] 2026-01-10 04:42:25,172 [wrapper] ==== wrapper stderr END ====
[2026-01-09 23:42:25]  *** Error codes and diagnostics ***
[2026-01-09 23:42:25]     "exeErrorCode": 0,
[2026-01-09 23:42:25]     "exeErrorDiag": "",
[2026-01-09 23:42:25]     "pilotErrorCode": 0,
[2026-01-09 23:42:25]     "pilotErrorDiag": "",
[2026-01-09 23:42:25]  *** Listing of results directory ***
[2026-01-09 23:42:25] total 666404
[2026-01-09 23:42:25] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 23:42:25] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-09 23:42:25] -rwx------. 1 boincer umatlas     36322 Jan  8 19:59 runpilot2-wrapper.sh
[2026-01-09 23:42:25] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 20:02 queuedata.json
[2026-01-09 23:42:25] -rw-r--r--. 1 boincer umatlas       100 Jan  9 13:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 23:42:25] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 13:34 run_atlas
[2026-01-09 23:42:25] -rw-r--r--. 1 boincer umatlas       105 Jan  9 13:34 job.xml
[2026-01-09 23:42:25] -rw-r--r--. 3 boincer umatlas 225275399 Jan  9 13:34 EVNT.47898824._001377.pool.root.1
[2026-01-09 23:42:25] -rw-r--r--. 3 boincer umatlas 225275399 Jan  9 13:34 ATLAS.root_0
[2026-01-09 23:42:25] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 13:34 start_atlas.sh
[2026-01-09 23:42:25] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 13:34 shared
[2026-01-09 23:42:25] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 13:34 input.tar.gz
[2026-01-09 23:42:25] -rw-r--r--. 1 boincer umatlas         0 Jan  9 13:34 boinc_lockfile
[2026-01-09 23:42:25] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 15:28 pandaJob.out
[2026-01-09 23:42:25] -rw-------. 1 boincer umatlas        57 Jan  9 15:28 setup.sh.local
[2026-01-09 23:42:25] -rw-------. 1 boincer umatlas    989381 Jan  9 15:29 agis_schedconf.cvmfs.json
[2026-01-09 23:42:25] -rw-r--r--. 1 boincer umatlas      6862 Jan  9 23:36 init_data.xml
[2026-01-09 23:42:25] -rw-------. 1 boincer umatlas 220279390 Jan  9 23:39 HITS.47898826._035537.pool.root.1
[2026-01-09 23:42:25] -rw-r--r--. 1 boincer umatlas       531 Jan  9 23:39 boinc_task_state.xml
[2026-01-09 23:42:25] -rw-------. 1 boincer umatlas      1046 Jan  9 23:40 memory_monitor_summary.json
[2026-01-09 23:42:25] -rw-------. 1 boincer umatlas   1516240 Jan  9 23:41 agis_ddmendpoints.agis.ALL.json
[2026-01-09 23:42:25] -rw-------. 1 boincer umatlas    615016 Jan  9 23:41 log.47898826._035537.job.log.tgz.1
[2026-01-09 23:42:25] -rw-------. 1 boincer umatlas      7828 Jan  9 23:41 heartbeat.json
[2026-01-09 23:42:25] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 23:41 boinc_mmap_file
[2026-01-09 23:42:25] -rw-r--r--. 1 boincer umatlas        28 Jan  9 23:42 wrapper_checkpoint.txt
[2026-01-09 23:42:25] -rw-------. 1 boincer umatlas        96 Jan  9 23:42 pilot_heartbeat.json
[2026-01-09 23:42:25] -rw-------. 1 boincer umatlas      5009 Jan  9 23:42 pilotlog.txt
[2026-01-09 23:42:25] -rw-------. 1 boincer umatlas   3205684 Jan  9 23:42 log.47898826._035537.job.log.1
[2026-01-09 23:42:25] -rw-------. 1 boincer umatlas       357 Jan  9 23:42 output.list
[2026-01-09 23:42:25] -rw-r--r--. 1 boincer umatlas       620 Jan  9 23:42 runtime_log
[2026-01-09 23:42:25] -rw-------. 1 boincer umatlas   3840000 Jan  9 23:42 result.tar.gz
[2026-01-09 23:42:25] -rw-r--r--. 1 boincer umatlas      9428 Jan  9 23:42 runtime_log.err
[2026-01-09 23:42:25] -rw-------. 1 boincer umatlas       782 Jan  9 23:42 I2QNDmM1Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHlgKDmRh4hZm.diag
[2026-01-09 23:42:25] -rw-r--r--. 1 boincer umatlas     23465 Jan  9 23:42 stderr.txt
[2026-01-09 23:42:25] HITS file was successfully produced:
[2026-01-09 23:42:25] -rw-------. 1 boincer umatlas 220279390 Jan  9 23:39 shared/HITS.pool.root.1
[2026-01-09 23:42:25]  *** Contents of shared directory: ***
[2026-01-09 23:42:25] total 439472
[2026-01-09 23:42:25] -rw-r--r--. 3 boincer umatlas 225275399 Jan  9 13:34 ATLAS.root_0
[2026-01-09 23:42:25] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 13:34 start_atlas.sh
[2026-01-09 23:42:25] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 13:34 input.tar.gz
[2026-01-09 23:42:25] -rw-------. 1 boincer umatlas 220279390 Jan  9 23:39 HITS.pool.root.1
[2026-01-09 23:42:25] -rw-------. 1 boincer umatlas   3840000 Jan  9 23:42 result.tar.gz
23:42:27 (623420): run_atlas exited; CPU time 62109.413078
23:42:27 (623420): called boinc_finish(0)

</stderr_txt>
]]>

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