Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:10:18 (2222747): wrapper (7.7.26015): starting
14:10:18 (2222747): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 14:10:18] Arguments: --nthreads 8
[2026-01-09 14:10:18] Threads: 8
[2026-01-09 14:10:18] Checking for CVMFS
[2026-01-09 14:10:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 14:10:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 14:10:19] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 14:10:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 14:10:19] 2.13.3.0 11772 93766 231440 154954 1 121 29123161 32935937 22224 16776704 0 503043369 99.507 663426980 36867 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 14:10:19] CVMFS is ok
[2026-01-09 14:10:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 14:10:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 14:10:19] Further information can be found at the LHC@home message board.
[2026-01-09 14:10:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 14:10:19] Checking for apptainer binary...
[2026-01-09 14:10:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 14:10:19] Running /usr/bin/apptainer --version
[2026-01-09 14:10:19] apptainer version 1.4.5-2.el9
[2026-01-09 14:10:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 14:10:19] c7-3-28.aglt2.org
[2026-01-09 14:10:19] apptainer works
[2026-01-09 14:10:20] Set ATHENA_PROC_NUMBER=8
[2026-01-09 14:10:20] Set ATHENA_CORE_NUMBER=8
[2026-01-09 14:10:20] Starting ATLAS job with PandaID=6963186904
[2026-01-09 14:10:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:40:44 (735569): wrapper (7.7.26015): starting
21:40:44 (735569): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 21:40:44] Arguments: --nthreads 8
[2026-01-09 21:40:44] Threads: 8
[2026-01-09 21:40:44] This job has been restarted, cleaning up previous attempt
[2026-01-09 21:40:44] Checking for CVMFS
[2026-01-09 21:40:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 21:40:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 21:40:44] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 21:40:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 21:40:45] 2.13.3.0 11772 94217 231020 154964 3 152 23691059 32935937 18060 16776704 0 504884444 99.508 664692656 36866 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 21:40:45] CVMFS is ok
[2026-01-09 21:40:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 21:40:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 21:40:45] Further information can be found at the LHC@home message board.
[2026-01-09 21:40:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 21:40:45] Checking for apptainer binary...
[2026-01-09 21:40:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 21:40:45] Running /usr/bin/apptainer --version
[2026-01-09 21:40:45] apptainer version 1.4.5-2.el9
[2026-01-09 21:40:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 21:40:45] c7-3-28.aglt2.org
[2026-01-09 21:40:45] apptainer works
[2026-01-09 21:40:45] Set ATHENA_PROC_NUMBER=8
[2026-01-09 21:40:45] Set ATHENA_CORE_NUMBER=8
[2026-01-09 21:40:45] Starting ATLAS job with PandaID=6963186904
[2026-01-09 21:40:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 01:36:36]  *** The last 200 lines of the pilot log: ***
[2026-01-10 01:36:36] 2026-01-10 06:36:02,056 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 01:36:36] 2026-01-10 06:36:02,402 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 01:36:36] 2026-01-10 06:36:02,407 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3207.6387291666656
[2026-01-10 01:36:36] 2026-01-10 06:36:02,420 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963186904/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 01:36:36] 2026-01-10 06:36:02,420 | INFO     | extracted standard info from prmon json
[2026-01-10 01:36:36] 2026-01-10 06:36:02,420 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 01:36:36] 2026-01-10 06:36:02,421 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 01:36:36] 2026-01-10 06:36:02,421 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 01:36:36] 2026-01-10 06:36:02,421 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 01:36:36] 2026-01-10 06:36:02,424 | INFO     | fitting pss+swap vs Time
[2026-01-10 01:36:36] 2026-01-10 06:36:02,425 | INFO     | sum of square deviations: 3822121061.748911
[2026-01-10 01:36:36] 2026-01-10 06:36:02,426 | INFO     | sum of deviations: 30879223772.891773
[2026-01-10 01:36:36] 2026-01-10 06:36:02,426 | INFO     | mean x: 1768019904.0735931
[2026-01-10 01:36:36] 2026-01-10 06:36:02,426 | INFO     | mean y: 2490130.3593073594
[2026-01-10 01:36:36] 2026-01-10 06:36:02,426 | INFO     | intersect: -14281485016.109161
[2026-01-10 01:36:36] 2026-01-10 06:36:02,427 | INFO     | chi2: 1.3776361866617213
[2026-01-10 01:36:36] 2026-01-10 06:36:02,427 | INFO     | sum of square deviations: 3579265879.221232
[2026-01-10 01:36:36] 2026-01-10 06:36:02,428 | INFO     | sum of deviations: 30169311857.849575
[2026-01-10 01:36:36] 2026-01-10 06:36:02,428 | INFO     | mean x: 1768019751.5752213
[2026-01-10 01:36:36] 2026-01-10 06:36:02,428 | INFO     | mean y: 2489684.5088495575
[2026-01-10 01:36:36] 2026-01-10 06:36:02,428 | INFO     | intersect: -14899990616.204704
[2026-01-10 01:36:36] 2026-01-10 06:36:02,428 | INFO     | chi2: 1.378227685822677
[2026-01-10 01:36:36] 2026-01-10 06:36:02,429 | INFO     | current chi2=1.378227685822677 (change=-0.04293580313021578 %)
[2026-01-10 01:36:36] 2026-01-10 06:36:02,429 | INFO     | right removable region: 225
[2026-01-10 01:36:36] 2026-01-10 06:36:02,429 | INFO     | sum of square deviations: 3579255509.221232
[2026-01-10 01:36:36] 2026-01-10 06:36:02,430 | INFO     | sum of deviations: -3037072837.017698
[2026-01-10 01:36:36] 2026-01-10 06:36:02,430 | INFO     | mean x: 1768020056.5752213
[2026-01-10 01:36:36] 2026-01-10 06:36:02,430 | INFO     | mean y: 2511221.853982301
[2026-01-10 01:36:36] 2026-01-10 06:36:02,430 | INFO     | intersect: 1502713058.6028225
[2026-01-10 01:36:36] 2026-01-10 06:36:02,430 | INFO     | chi2: 0.02721188866726456
[2026-01-10 01:36:36] 2026-01-10 06:36:02,431 | INFO     | current chi2=0.02721188866726456 (change=98.02474057151444 %)
[2026-01-10 01:36:36] 2026-01-10 06:36:02,431 | INFO     | sum of square deviations: 3346901781.6922903
[2026-01-10 01:36:36] 2026-01-10 06:36:02,432 | INFO     | sum of deviations: -4945106220.230772
[2026-01-10 01:36:36] 2026-01-10 06:36:02,432 | INFO     | mean x: 1768020209.0769231
[2026-01-10 01:36:36] 2026-01-10 06:36:02,432 | INFO     | mean y: 2512450.07239819
[2026-01-10 01:36:36] 2026-01-10 06:36:02,432 | INFO     | intersect: 2614793390.381099
[2026-01-10 01:36:36] 2026-01-10 06:36:02,432 | INFO     | chi2: 0.014180359765061414
[2026-01-10 01:36:36] 2026-01-10 06:36:02,432 | INFO     | current chi2=0.014180359765061414 (change=47.88910119965269 %)
[2026-01-10 01:36:36] 2026-01-10 06:36:02,433 | INFO     | sum of square deviations: 3124827316.6620526
[2026-01-10 01:36:36] 2026-01-10 06:36:02,434 | INFO     | sum of deviations: -3835919687.916669
[2026-01-10 01:36:36] 2026-01-10 06:36:02,434 | INFO     | mean x: 1768020361.5787036
[2026-01-10 01:36:36] 2026-01-10 06:36:02,434 | INFO     | mean y: 2511686.5833333335
[2026-01-10 01:36:36] 2026-01-10 06:36:02,434 | INFO     | intersect: 2172866533.859127
[2026-01-10 01:36:36] 2026-01-10 06:36:02,434 | INFO     | chi2: 0.013704174877408892
[2026-01-10 01:36:36] 2026-01-10 06:36:02,434 | INFO     | current chi2=0.013704174877408892 (change=3.358059284403915 %)
[2026-01-10 01:36:36] 2026-01-10 06:36:02,434 | INFO     | left removable region: 30
[2026-01-10 01:36:36] 2026-01-10 06:36:02,435 | INFO     | sum of square deviations: 2299128083.517958
[2026-01-10 01:36:36] 2026-01-10 06:36:02,435 | INFO     | sum of deviations: 2586323707.728205
[2026-01-10 01:36:36] 2026-01-10 06:36:02,436 | INFO     | mean x: 1768020636.0871794
[2026-01-10 01:36:36] 2026-01-10 06:36:02,436 | INFO     | mean y: 2506596.251282051
[2026-01-10 01:36:36] 2026-01-10 06:36:02,436 | INFO     | intersect: -1986366368.08927
[2026-01-10 01:36:36] 2026-01-10 06:36:02,436 | INFO     | chi2: 0.002409366523571437
[2026-01-10 01:36:36] 2026-01-10 06:36:02,436 | INFO     | current memory leak: 1.12 B/s (using 195 data points, chi2=0.00)
[2026-01-10 01:36:36] 2026-01-10 06:36:02,436 | INFO     | could have reported an average CPU frequency of 3176 MHz (11 samples)
[2026-01-10 01:36:36] 2026-01-10 06:36:02,436 | INFO     | ..............................
[2026-01-10 01:36:36] 2026-01-10 06:36:02,437 | INFO     | . Timing measurements:
[2026-01-10 01:36:36] 2026-01-10 06:36:02,437 | INFO     | . get job = 0 s
[2026-01-10 01:36:36] 2026-01-10 06:36:02,437 | INFO     | . initial setup = 2 s
[2026-01-10 01:36:36] 2026-01-10 06:36:02,437 | INFO     | . payload setup = 7 s
[2026-01-10 01:36:36] 2026-01-10 06:36:02,437 | INFO     | . stage-in = 0 s
[2026-01-10 01:36:36] 2026-01-10 06:36:02,437 | INFO     | . payload execution = 14066 s
[2026-01-10 01:36:36] 2026-01-10 06:36:02,437 | INFO     | . stage-out = 2 s
[2026-01-10 01:36:36] 2026-01-10 06:36:02,437 | INFO     | . log creation = 0 s
[2026-01-10 01:36:36] 2026-01-10 06:36:02,437 | INFO     | ..............................
[2026-01-10 01:36:36] 2026-01-10 06:36:02,687 | INFO     | time since job start (14105s) is within the limit (349056.0s)
[2026-01-10 01:36:36] 2026-01-10 06:36:02,994 | INFO     | 
[2026-01-10 01:36:36] 2026-01-10 06:36:02,994 | INFO     | job summary report
[2026-01-10 01:36:36] 2026-01-10 06:36:02,994 | INFO     | --------------------------------------------------
[2026-01-10 01:36:36] 2026-01-10 06:36:02,994 | INFO     | PanDA job id: 6963186904
[2026-01-10 01:36:36] 2026-01-10 06:36:02,994 | INFO     | task id: 47898826
[2026-01-10 01:36:36] 2026-01-10 06:36:02,994 | INFO     | errors: (none)
[2026-01-10 01:36:36] 2026-01-10 06:36:02,994 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 01:36:36] 2026-01-10 06:36:02,994 | INFO     | pilot state: finished 
[2026-01-10 01:36:36] 2026-01-10 06:36:02,994 | INFO     | transexitcode: 0
[2026-01-10 01:36:36] 2026-01-10 06:36:02,994 | INFO     | exeerrorcode: 0
[2026-01-10 01:36:36] 2026-01-10 06:36:02,994 | INFO     | exeerrordiag: 
[2026-01-10 01:36:36] 2026-01-10 06:36:02,995 | INFO     | exitcode: 0
[2026-01-10 01:36:36] 2026-01-10 06:36:02,995 | INFO     | exitmsg: OK
[2026-01-10 01:36:36] 2026-01-10 06:36:02,995 | INFO     | cpuconsumptiontime: 47045 s
[2026-01-10 01:36:36] 2026-01-10 06:36:02,995 | INFO     | nevents: 400
[2026-01-10 01:36:36] 2026-01-10 06:36:02,995 | INFO     | neventsw: 0
[2026-01-10 01:36:36] 2026-01-10 06:36:02,995 | INFO     | pid: 788002
[2026-01-10 01:36:36] 2026-01-10 06:36:02,995 | INFO     | pgrp: 788002
[2026-01-10 01:36:36] 2026-01-10 06:36:02,995 | INFO     | corecount: 8
[2026-01-10 01:36:36] 2026-01-10 06:36:02,995 | INFO     | event service: False
[2026-01-10 01:36:36] 2026-01-10 06:36:02,995 | INFO     | sizes: {0: 2283970, 1: 2283970, 6: 2284260, 11: 2284288, 14077: 2315109, 14081: 2324291, 14088: 2324429}
[2026-01-10 01:36:36] 2026-01-10 06:36:02,995 | INFO     | --------------------------------------------------
[2026-01-10 01:36:36] 2026-01-10 06:36:02,995 | INFO     | 
[2026-01-10 01:36:36] 2026-01-10 06:36:02,995 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-10 01:36:36] 2026-01-10 06:36:03,021 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 01:36:36] 2026-01-10 06:36:03,024 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 01:36:36] 2026-01-10 06:36:03,025 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 01:36:36] 2026-01-10 06:36:03,025 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 01:36:36] 2026-01-10 06:36:03,025 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 01:36:36] 2026-01-10 06:36:03,025 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 01:36:36] 2026-01-10 06:36:03,025 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 01:36:36] 2026-01-10 06:36:03,025 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 01:36:36] 2026-01-10 06:36:03,025 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 01:36:36] 2026-01-10 06:36:03,025 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 01:36:36] 2026-01-10 06:36:03,025 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 01:36:36] 2026-01-10 06:36:03,025 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 01:36:36] 2026-01-10 06:36:03,025 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 01:36:36] 2026-01-10 06:36:03,026 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 01:36:36] 2026-01-10 06:36:03,026 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 01:36:36] 2026-01-10 06:36:03,026 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 01:36:36] 2026-01-10 06:36:03,026 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 01:36:36] 2026-01-10 06:36:03,026 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 01:36:36] 2026-01-10 06:36:03,026 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 01:36:36] 2026-01-10 06:36:03,026 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 01:36:36] 2026-01-10 06:36:03,026 | INFO     | job 6963186904 has completed (purged errors)
[2026-01-10 01:36:36] 2026-01-10 06:36:03,026 | INFO     | overall cleanup function is called
[2026-01-10 01:36:36] 2026-01-10 06:36:04,037 | INFO     | --- collectZombieJob: --- 10, [788002]
[2026-01-10 01:36:36] 2026-01-10 06:36:04,037 | INFO     | zombie collector waiting for pid 788002
[2026-01-10 01:36:36] 2026-01-10 06:36:04,037 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 01:36:36] 2026-01-10 06:36:04,037 | INFO     | collected zombie processes
[2026-01-10 01:36:36] 2026-01-10 06:36:04,037 | INFO     | will attempt to kill all subprocesses of pid=788002
[2026-01-10 01:36:36] 2026-01-10 06:36:04,532 | INFO     | process IDs to be killed: [788002] (in reverse order)
[2026-01-10 01:36:36] 2026-01-10 06:36:04,691 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 01:36:36] 2026-01-10 06:36:04,691 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 01:36:36] 2026-01-10 06:36:04,710 | INFO     | did not find any defunct processes belonging to 788002
[2026-01-10 01:36:36] 2026-01-10 06:36:04,729 | INFO     | did not find any defunct processes belonging to 788002
[2026-01-10 01:36:36] 2026-01-10 06:36:04,729 | INFO     | ready for new job
[2026-01-10 01:36:36] 2026-01-10 06:36:04,729 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 01:36:36] 2026-01-10 06:36:04,731 | INFO     | ***************************************
[2026-01-10 01:36:36] 2026-01-10 06:36:04,731 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 01:36:36] 2026-01-10 06:36:04,731 | INFO     | ***************************************
[2026-01-10 01:36:36] 2026-01-10 06:36:04,731 | INFO     | 
[2026-01-10 01:36:36] 2026-01-10 06:36:04,736 | INFO     | architecture information:
[2026-01-10 01:36:36] 2026-01-10 06:36:04,736 | INFO     | executing command: cat /etc/os-release
[2026-01-10 01:36:36] 2026-01-10 06:36:04,766 | INFO     | cat /etc/os-release:
[2026-01-10 01:36:36] NAME="CentOS Linux"
[2026-01-10 01:36:36] VERSION="7 (Core)"
[2026-01-10 01:36:36] ID="centos"
[2026-01-10 01:36:36] ID_LIKE="rhel fedora"
[2026-01-10 01:36:36] VERSION_ID="7"
[2026-01-10 01:36:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 01:36:36] ANSI_COLOR="0;31"
[2026-01-10 01:36:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 01:36:36] HOME_URL="https://www.centos.org/"
[2026-01-10 01:36:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 01:36:36] 
[2026-01-10 01:36:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 01:36:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 01:36:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 01:36:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 01:36:36] 
[2026-01-10 01:36:36] 2026-01-10 06:36:04,766 | INFO     | ***************************************
[2026-01-10 01:36:36] 2026-01-10 06:36:05,269 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-10 01:36:36] 2026-01-10 06:36:05,303 | INFO     | sufficient remaining disk space (74004299776 B)
[2026-01-10 01:36:36] 2026-01-10 06:36:05,304 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 01:36:36] 2026-01-10 06:36:05,304 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 01:36:36] 2026-01-10 06:36:05,304 | INFO     | update_server=False
[2026-01-10 01:36:36] 2026-01-10 06:36:05,304 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 01:36:36] 2026-01-10 06:36:05,304 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 01:36:36] 2026-01-10 06:36:05,342 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 01:36:36] 2026-01-10 06:36:05,571 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 01:36:36] 2026-01-10 06:36:05,571 | INFO     | aborting loop
[2026-01-10 01:36:36] 2026-01-10 06:36:06,081 | INFO     | all payload control threads have been joined
[2026-01-10 01:36:36] 2026-01-10 06:36:06,146 | INFO     | all data control threads have been joined
[2026-01-10 01:36:36] 2026-01-10 06:36:06,309 | INFO     | [job] retrieve thread has finished
[2026-01-10 01:36:36] 2026-01-10 06:36:06,482 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 01:36:36] 2026-01-10 06:36:06,520 | INFO     | [job] validate thread has finished
[2026-01-10 01:36:36] 2026-01-10 06:36:06,576 | INFO     | [job] job monitor thread has finished
[2026-01-10 01:36:36] 2026-01-10 06:36:06,628 | INFO     | all job control threads have been joined
[2026-01-10 01:36:36] 2026-01-10 06:36:06,894 | INFO     | [payload] failed_post thread has finished
[2026-01-10 01:36:36] 2026-01-10 06:36:07,026 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 01:36:36] 2026-01-10 06:36:07,029 | INFO     | [payload] validate_post thread has finished
[2026-01-10 01:36:36] 2026-01-10 06:36:07,065 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 01:36:36] 2026-01-10 06:36:07,087 | INFO     | [payload] control thread has finished
[2026-01-10 01:36:36] 2026-01-10 06:36:07,151 | INFO     | [data] control thread has finished
[2026-01-10 01:36:36] 2026-01-10 06:36:07,196 | INFO     | [data] copytool_in thread has finished
[2026-01-10 01:36:36] 2026-01-10 06:36:07,311 | INFO     | [data] copytool_out thread has finished
[2026-01-10 01:36:36] 2026-01-10 06:36:07,528 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 01:36:36] 2026-01-10 06:36:07,528 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 01:36:36] 2026-01-10 06:36:07,633 | INFO     | [job] control thread has finished
[2026-01-10 01:36:36] 2026-01-10 06:36:08,533 | INFO     | [job] queue monitor thread has finished
[2026-01-10 01:36:36] 2026-01-10 06:36:09,352 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 01:36:36] 2026-01-10 06:36:21,992 | INFO     | [monitor] cgroup control has ended
[2026-01-10 01:36:36] 2026-01-10 06:36:22,949 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140305663698752)>', '<ExcThread(monitor, started 140305038833408)>']
[2026-01-10 01:36:36] 2026-01-10 06:36:27,977 | INFO     | all workflow threads have been joined
[2026-01-10 01:36:36] 2026-01-10 06:36:27,977 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 01:36:36] 2026-01-10 06:36:27,977 | INFO     | traces error code: 0
[2026-01-10 01:36:36] 2026-01-10 06:36:27,977 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 01:36:36] 2026-01-10 06:36:36,363 | INFO     | PID=754405 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 01:36:36] 2026-01-10 06:36:36,363 | INFO     | .. there are 27 such processes running
[2026-01-10 01:36:36] 2026-01-10 06:36:36,364 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 01:36:36] 2026-01-10 06:36:36,364 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 01:36:36] 2026-01-10 06:36:36,364 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 01:36:36] 2026-01-10 06:36:36,364 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 01:36:36] 2026-01-10 06:36:36,364 | INFO     | [monitor] control thread has ended
[2026-01-10 01:36:36] 2026-01-10 06:36:36,479 [wrapper] ==== pilot stdout END ====
[2026-01-10 01:36:36] 2026-01-10 06:36:36,481 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 01:36:36] 2026-01-10 06:36:36,483 [wrapper] pilotpid: 754405
[2026-01-10 01:36:36] 2026-01-10 06:36:36,486 [wrapper] Pilot exit status: 0
[2026-01-10 01:36:36] 2026-01-10 06:36:36,498 [wrapper] pandaids: 6963186904 6963186904
[2026-01-10 01:36:36] 2026-01-10 06:36:36,610 [wrapper] cleanup supervisor_pilot 2136187 754406
[2026-01-10 01:36:36] 2026-01-10 06:36:36,613 [wrapper] Test setup, not cleaning
[2026-01-10 01:36:36] 2026-01-10 06:36:36,616 [wrapper] apfmon messages muted
[2026-01-10 01:36:36] 2026-01-10 06:36:36,620 [wrapper] ==== wrapper stdout END ====
[2026-01-10 01:36:36] 2026-01-10 06:36:36,623 [wrapper] ==== wrapper stderr END ====
[2026-01-10 01:36:36]  *** Error codes and diagnostics ***
[2026-01-10 01:36:36]     "exeErrorCode": 0,
[2026-01-10 01:36:36]     "exeErrorDiag": "",
[2026-01-10 01:36:36]     "pilotErrorCode": 0,
[2026-01-10 01:36:36]     "pilotErrorDiag": "",
[2026-01-10 01:36:36]  *** Listing of results directory ***
[2026-01-10 01:36:36] total 661712
[2026-01-10 01:36:36] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-10 01:36:36] -rwx------. 1 boincer umatlas     36322 Jan  8 20:01 runpilot2-wrapper.sh
[2026-01-10 01:36:36] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-10 01:36:36] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 20:06 queuedata.json
[2026-01-10 01:36:36] -rw-r--r--. 1 boincer umatlas       100 Jan  9 14:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 01:36:36] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 14:10 run_atlas
[2026-01-10 01:36:36] -rw-r--r--. 1 boincer umatlas       105 Jan  9 14:10 job.xml
[2026-01-10 01:36:36] -rw-r--r--. 3 boincer umatlas 224246184 Jan  9 14:10 EVNT.47898824._001411.pool.root.1
[2026-01-10 01:36:36] -rw-r--r--. 3 boincer umatlas 224246184 Jan  9 14:10 ATLAS.root_0
[2026-01-10 01:36:36] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 14:10 start_atlas.sh
[2026-01-10 01:36:36] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 14:10 shared
[2026-01-10 01:36:36] -rw-r--r--. 2 boincer umatlas    592404 Jan  9 14:10 input.tar.gz
[2026-01-10 01:36:36] -rw-r--r--. 1 boincer umatlas         0 Jan  9 14:10 boinc_lockfile
[2026-01-10 01:36:36] -rw-r--r--. 1 boincer umatlas      2519 Jan  9 21:40 pandaJob.out
[2026-01-10 01:36:36] -rw-------. 1 boincer umatlas        57 Jan  9 21:40 setup.sh.local
[2026-01-10 01:36:36] -rw-------. 1 boincer umatlas    989382 Jan  9 21:40 agis_schedconf.cvmfs.json
[2026-01-10 01:36:36] -rw-r--r--. 1 boincer umatlas      6944 Jan 10 01:31 init_data.xml
[2026-01-10 01:36:36] -rw-------. 1 boincer umatlas 220588765 Jan 10 01:35 HITS.47898826._036812.pool.root.1
[2026-01-10 01:36:36] -rw-r--r--. 1 boincer umatlas       531 Jan 10 01:35 boinc_task_state.xml
[2026-01-10 01:36:36] -rw-------. 1 boincer umatlas      1045 Jan 10 01:35 memory_monitor_summary.json
[2026-01-10 01:36:36] -rw-------. 1 boincer umatlas   1516240 Jan 10 01:35 agis_ddmendpoints.agis.ALL.json
[2026-01-10 01:36:36] -rw-------. 1 boincer umatlas    456452 Jan 10 01:35 log.47898826._036812.job.log.tgz.1
[2026-01-10 01:36:36] -rw-------. 1 boincer umatlas        96 Jan 10 01:35 pilot_heartbeat.json
[2026-01-10 01:36:36] -rw-------. 1 boincer umatlas      7795 Jan 10 01:36 heartbeat.json
[2026-01-10 01:36:36] -rw-r--r--. 1 boincer umatlas        28 Jan 10 01:36 wrapper_checkpoint.txt
[2026-01-10 01:36:36] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 01:36 boinc_mmap_file
[2026-01-10 01:36:36] -rw-------. 1 boincer umatlas       822 Jan 10 01:36 pilotlog.txt
[2026-01-10 01:36:36] -rw-------. 1 boincer umatlas   1839246 Jan 10 01:36 log.47898826._036812.job.log.1
[2026-01-10 01:36:36] -rw-------. 1 boincer umatlas       357 Jan 10 01:36 output.list
[2026-01-10 01:36:36] -rw-r--r--. 1 boincer umatlas       620 Jan 10 01:36 runtime_log
[2026-01-10 01:36:36] -rw-------. 1 boincer umatlas   2314240 Jan 10 01:36 result.tar.gz
[2026-01-10 01:36:36] -rw-r--r--. 1 boincer umatlas      9423 Jan 10 01:36 runtime_log.err
[2026-01-10 01:36:36] -rw-------. 1 boincer umatlas       784 Jan 10 01:36 oPbKDmm3Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbpgKDm8HDdJn.diag
[2026-01-10 01:36:36] -rw-r--r--. 1 boincer umatlas     23353 Jan 10 01:36 stderr.txt
[2026-01-10 01:36:36] HITS file was successfully produced:
[2026-01-10 01:36:36] -rw-------. 1 boincer umatlas 220588765 Jan 10 01:35 shared/HITS.pool.root.1
[2026-01-10 01:36:36]  *** Contents of shared directory: ***
[2026-01-10 01:36:36] total 437276
[2026-01-10 01:36:36] -rw-r--r--. 3 boincer umatlas 224246184 Jan  9 14:10 ATLAS.root_0
[2026-01-10 01:36:36] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 14:10 start_atlas.sh
[2026-01-10 01:36:36] -rw-r--r--. 2 boincer umatlas    592404 Jan  9 14:10 input.tar.gz
[2026-01-10 01:36:36] -rw-------. 1 boincer umatlas 220588765 Jan 10 01:35 HITS.pool.root.1
[2026-01-10 01:36:36] -rw-------. 1 boincer umatlas   2314240 Jan 10 01:36 result.tar.gz
01:36:38 (735569): run_atlas exited; CPU time 47595.172454
01:36:38 (735569): called boinc_finish(0)

</stderr_txt>
]]>

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