Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:38:54 (935977): wrapper (7.7.26015): starting
18:38:54 (935977): wrapper: running run_atlas (--nthreads 6)
[2026-01-10 18:38:54] Arguments: --nthreads 6
[2026-01-10 18:38:54] Threads: 6
[2026-01-10 18:38:54] Checking for CVMFS
[2026-01-10 18:38:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 18:38:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 18:38:54] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 18:38:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 18:38:55] 2.13.3.0 123159 2454 76784 154974 1 81 39207111 52428800 899 130560 0 2606620 99.993 86532 124 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-10 18:38:55] CVMFS is ok
[2026-01-10 18:38:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 18:38:55] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-10 18:38:55] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-10 18:38:55] Further information can be found at the LHC@home message board.
[2026-01-10 18:38:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 18:38:55] Checking for apptainer binary...
[2026-01-10 18:38:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 18:38:55] Running /usr/bin/apptainer --version
[2026-01-10 18:38:55] apptainer version 1.4.5-2.el9
[2026-01-10 18:38:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 18:38:55] Atto003
[2026-01-10 18:38:55] apptainer works
[2026-01-10 18:38:55] Set ATHENA_PROC_NUMBER=6
[2026-01-10 18:38:55] Set ATHENA_CORE_NUMBER=6
[2026-01-10 18:38:55] Starting ATLAS job with PandaID=6963187118
[2026-01-10 18:38:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 21:07:27]  *** The last 200 lines of the pilot log: ***
[2026-01-10 21:07:27] 2026-01-10 12:06:22,090 | INFO     | monitor loop #673: job 0:6963187118 is in state 'finished'
[2026-01-10 21:07:27] 2026-01-10 12:06:22,090 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 21:07:27] 2026-01-10 12:06:23,983 | INFO     | time since job start (8837s) is within the limit (349056.0s)
[2026-01-10 21:07:27] 2026-01-10 12:06:24,592 | INFO     | monitor loop #674: job 0:6963187118 is in state 'finished'
[2026-01-10 21:07:27] 2026-01-10 12:06:24,592 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 21:07:27] 2026-01-10 12:06:25,988 | INFO     | time since job start (8839s) is within the limit (349056.0s)
[2026-01-10 21:07:27] 2026-01-10 12:06:27,071 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 21:07:27] 2026-01-10 12:06:27,073 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3499.9663750000004
[2026-01-10 21:07:27] 2026-01-10 12:06:27,076 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6963187118/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 21:07:27] 2026-01-10 12:06:27,077 | INFO     | extracted standard info from prmon json
[2026-01-10 21:07:27] 2026-01-10 12:06:27,078 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 21:07:27] 2026-01-10 12:06:27,078 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 21:07:27] 2026-01-10 12:06:27,078 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 21:07:27] 2026-01-10 12:06:27,078 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 21:07:27] 2026-01-10 12:06:27,080 | INFO     | fitting pss+swap vs Time
[2026-01-10 21:07:27] 2026-01-10 12:06:27,080 | INFO     | sum of square deviations: 945278936.9931037
[2026-01-10 21:07:27] 2026-01-10 12:06:27,081 | INFO     | sum of deviations: -21367760474.13793
[2026-01-10 21:07:27] 2026-01-10 12:06:27,081 | INFO     | mean x: 1768042364.0068965
[2026-01-10 21:07:27] 2026-01-10 12:06:27,081 | INFO     | mean y: 2492455.1379310344
[2026-01-10 21:07:27] 2026-01-10 12:06:27,081 | INFO     | intersect: 39968585281.031044
[2026-01-10 21:07:27] 2026-01-10 12:06:27,082 | INFO     | chi2: 3.008745601035906
[2026-01-10 21:07:27] 2026-01-10 12:06:27,082 | INFO     | sum of square deviations: 850821656.9928573
[2026-01-10 21:07:27] 2026-01-10 12:06:27,082 | INFO     | sum of deviations: -11329066343.192856
[2026-01-10 21:07:27] 2026-01-10 12:06:27,082 | INFO     | mean x: 1768042211.5071428
[2026-01-10 21:07:27] 2026-01-10 12:06:27,083 | INFO     | mean y: 2508269.692857143
[2026-01-10 21:07:27] 2026-01-10 12:06:27,083 | INFO     | intersect: 23544771618.42422
[2026-01-10 21:07:27] 2026-01-10 12:06:27,083 | INFO     | chi2: 2.361332813102844
[2026-01-10 21:07:27] 2026-01-10 12:06:27,083 | INFO     | current chi2=2.361332813102844 (change=21.517697864191604 %)
[2026-01-10 21:07:27] 2026-01-10 12:06:27,083 | INFO     | right removable region: 139
[2026-01-10 21:07:27] 2026-01-10 12:06:27,083 | INFO     | sum of square deviations: 850821046.9928573
[2026-01-10 21:07:27] 2026-01-10 12:06:27,084 | INFO     | sum of deviations: -51140205391.750015
[2026-01-10 21:07:27] 2026-01-10 12:06:27,084 | INFO     | mean x: 1768042516.5071428
[2026-01-10 21:07:27] 2026-01-10 12:06:27,084 | INFO     | mean y: 2540157.25
[2026-01-10 21:07:27] 2026-01-10 12:06:27,084 | INFO     | intersect: 106274073701.3431
[2026-01-10 21:07:27] 2026-01-10 12:06:27,084 | INFO     | chi2: 0.98853773556275
[2026-01-10 21:07:27] 2026-01-10 12:06:27,084 | INFO     | current chi2=0.98853773556275 (change=67.1445224474147 %)
[2026-01-10 21:07:27] 2026-01-10 12:06:27,085 | INFO     | sum of square deviations: 762874906.9925944
[2026-01-10 21:07:27] 2026-01-10 12:06:27,085 | INFO     | sum of deviations: -49171839248.533325
[2026-01-10 21:07:27] 2026-01-10 12:06:27,085 | INFO     | mean x: 1768042669.0074074
[2026-01-10 21:07:27] 2026-01-10 12:06:27,085 | INFO     | mean y: 2536623.533333333
[2026-01-10 21:07:27] 2026-01-10 12:06:27,085 | INFO     | intersect: 113963435203.49413
[2026-01-10 21:07:27] 2026-01-10 12:06:27,086 | INFO     | chi2: 0.9594252611035714
[2026-01-10 21:07:27] 2026-01-10 12:06:27,086 | INFO     | current chi2=0.9594252611035714 (change=2.945003858917498 %)
[2026-01-10 21:07:27] 2026-01-10 12:06:27,086 | INFO     | left removable region: 20
[2026-01-10 21:07:27] 2026-01-10 12:06:27,086 | INFO     | sum of square deviations: 522498062.9915964
[2026-01-10 21:07:27] 2026-01-10 12:06:27,086 | INFO     | sum of deviations: -26743104693.571426
[2026-01-10 21:07:27] 2026-01-10 12:06:27,087 | INFO     | mean x: 1768042791.0084033
[2026-01-10 21:07:27] 2026-01-10 12:06:27,087 | INFO     | mean y: 2530948.5714285714
[2026-01-10 21:07:27] 2026-01-10 12:06:27,087 | INFO     | intersect: 90496557265.01431
[2026-01-10 21:07:27] 2026-01-10 12:06:27,087 | INFO     | chi2: 0.24543970636834894
[2026-01-10 21:07:27] 2026-01-10 12:06:27,087 | INFO     | current memory leak: -51.18 B/s (using 119 data points, chi2=0.25)
[2026-01-10 21:07:27] 2026-01-10 12:06:27,087 | INFO     | could have reported an average CPU frequency of 3515 MHz (8 samples)
[2026-01-10 21:07:27] 2026-01-10 12:06:27,087 | INFO     | ..............................
[2026-01-10 21:07:27] 2026-01-10 12:06:27,087 | INFO     | . Timing measurements:
[2026-01-10 21:07:27] 2026-01-10 12:06:27,088 | INFO     | . get job = 0 s
[2026-01-10 21:07:27] 2026-01-10 12:06:27,088 | INFO     | . initial setup = 4 s
[2026-01-10 21:07:27] 2026-01-10 12:06:27,088 | INFO     | . payload setup = 6 s
[2026-01-10 21:07:27] 2026-01-10 12:06:27,088 | INFO     | . stage-in = 0 s
[2026-01-10 21:07:27] 2026-01-10 12:06:27,088 | INFO     | . payload execution = 8797 s
[2026-01-10 21:07:27] 2026-01-10 12:06:27,088 | INFO     | . stage-out = 0 s
[2026-01-10 21:07:27] 2026-01-10 12:06:27,088 | INFO     | . log creation = 0 s
[2026-01-10 21:07:27] 2026-01-10 12:06:27,088 | INFO     | ..............................
[2026-01-10 21:07:27] 2026-01-10 12:06:27,463 | INFO     | 
[2026-01-10 21:07:27] 2026-01-10 12:06:27,463 | INFO     | job summary report
[2026-01-10 21:07:27] 2026-01-10 12:06:27,463 | INFO     | --------------------------------------------------
[2026-01-10 21:07:27] 2026-01-10 12:06:27,463 | INFO     | PanDA job id: 6963187118
[2026-01-10 21:07:27] 2026-01-10 12:06:27,463 | INFO     | task id: 47898826
[2026-01-10 21:07:27] 2026-01-10 12:06:27,463 | INFO     | errors: (none)
[2026-01-10 21:07:27] 2026-01-10 12:06:27,463 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 21:07:27] 2026-01-10 12:06:27,463 | INFO     | pilot state: finished 
[2026-01-10 21:07:27] 2026-01-10 12:06:27,463 | INFO     | transexitcode: 0
[2026-01-10 21:07:27] 2026-01-10 12:06:27,463 | INFO     | exeerrorcode: 0
[2026-01-10 21:07:27] 2026-01-10 12:06:27,463 | INFO     | exeerrordiag: 
[2026-01-10 21:07:27] 2026-01-10 12:06:27,464 | INFO     | exitcode: 0
[2026-01-10 21:07:27] 2026-01-10 12:06:27,464 | INFO     | exitmsg: OK
[2026-01-10 21:07:27] 2026-01-10 12:06:27,464 | INFO     | cpuconsumptiontime: 49662 s
[2026-01-10 21:07:27] 2026-01-10 12:06:27,464 | INFO     | nevents: 400
[2026-01-10 21:07:27] 2026-01-10 12:06:27,464 | INFO     | neventsw: 0
[2026-01-10 21:07:27] 2026-01-10 12:06:27,464 | INFO     | pid: 946502
[2026-01-10 21:07:27] 2026-01-10 12:06:27,464 | INFO     | pgrp: 946502
[2026-01-10 21:07:27] 2026-01-10 12:06:27,464 | INFO     | corecount: 6
[2026-01-10 21:07:27] 2026-01-10 12:06:27,464 | INFO     | event service: False
[2026-01-10 21:07:27] 2026-01-10 12:06:27,464 | INFO     | sizes: {0: 2283856, 1: 2283998, 5: 2284260, 11: 2284316, 8807: 2312580, 8809: 2321578, 8812: 2321762, 8825: 2321956}
[2026-01-10 21:07:27] 2026-01-10 12:06:27,464 | INFO     | --------------------------------------------------
[2026-01-10 21:07:27] 2026-01-10 12:06:27,464 | INFO     | 
[2026-01-10 21:07:27] 2026-01-10 12:06:27,464 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2026-01-10 21:07:27] 2026-01-10 12:06:27,478 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 21:07:27] 2026-01-10 12:06:27,478 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 21:07:27] 2026-01-10 12:06:27,478 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 21:07:27] 2026-01-10 12:06:27,478 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 21:07:27] 2026-01-10 12:06:27,478 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 21:07:27] 2026-01-10 12:06:27,478 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 21:07:27] 2026-01-10 12:06:27,478 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 21:07:27] 2026-01-10 12:06:27,479 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 21:07:27] 2026-01-10 12:06:27,479 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 21:07:27] 2026-01-10 12:06:27,479 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 21:07:27] 2026-01-10 12:06:27,479 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 21:07:27] 2026-01-10 12:06:27,479 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 21:07:27] 2026-01-10 12:06:27,479 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 21:07:27] 2026-01-10 12:06:27,479 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 21:07:27] 2026-01-10 12:06:27,479 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 21:07:27] 2026-01-10 12:06:27,479 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 21:07:27] 2026-01-10 12:06:27,479 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 21:07:27] 2026-01-10 12:06:27,479 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 21:07:27] 2026-01-10 12:06:27,479 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 21:07:27] 2026-01-10 12:06:27,480 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 21:07:27] 2026-01-10 12:06:27,480 | INFO     | job 6963187118 has completed (purged errors)
[2026-01-10 21:07:27] 2026-01-10 12:06:27,480 | INFO     | overall cleanup function is called
[2026-01-10 21:07:27] 2026-01-10 12:06:28,486 | INFO     | --- collectZombieJob: --- 10, [946502]
[2026-01-10 21:07:27] 2026-01-10 12:06:28,486 | INFO     | zombie collector waiting for pid 946502
[2026-01-10 21:07:27] 2026-01-10 12:06:28,486 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 21:07:27] 2026-01-10 12:06:28,486 | INFO     | collected zombie processes
[2026-01-10 21:07:27] 2026-01-10 12:06:28,486 | INFO     | will attempt to kill all subprocesses of pid=946502
[2026-01-10 21:07:27] 2026-01-10 12:06:28,563 | INFO     | process IDs to be killed: [946502] (in reverse order)
[2026-01-10 21:07:27] 2026-01-10 12:06:28,590 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 21:07:27] 2026-01-10 12:06:28,591 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 21:07:27] 2026-01-10 12:06:28,592 | INFO     | did not find any defunct processes belonging to 946502
[2026-01-10 21:07:27] 2026-01-10 12:06:28,594 | INFO     | did not find any defunct processes belonging to 946502
[2026-01-10 21:07:27] 2026-01-10 12:06:28,594 | INFO     | ready for new job
[2026-01-10 21:07:27] 2026-01-10 12:06:28,594 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 21:07:27] 2026-01-10 12:06:28,595 | INFO     | ***************************************
[2026-01-10 21:07:27] 2026-01-10 12:06:28,595 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 21:07:27] 2026-01-10 12:06:28,595 | INFO     | ***************************************
[2026-01-10 21:07:27] 2026-01-10 12:06:28,595 | INFO     | 
[2026-01-10 21:07:27] 2026-01-10 12:06:28,596 | INFO     | architecture information:
[2026-01-10 21:07:27] 2026-01-10 12:06:28,596 | INFO     | executing command: cat /etc/os-release
[2026-01-10 21:07:27] 2026-01-10 12:06:28,605 | INFO     | cat /etc/os-release:
[2026-01-10 21:07:27] NAME="CentOS Linux"
[2026-01-10 21:07:27] VERSION="7 (Core)"
[2026-01-10 21:07:27] ID="centos"
[2026-01-10 21:07:27] ID_LIKE="rhel fedora"
[2026-01-10 21:07:27] VERSION_ID="7"
[2026-01-10 21:07:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 21:07:27] ANSI_COLOR="0;31"
[2026-01-10 21:07:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 21:07:27] HOME_URL="https://www.centos.org/"
[2026-01-10 21:07:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 21:07:27] 
[2026-01-10 21:07:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 21:07:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 21:07:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 21:07:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 21:07:27] 
[2026-01-10 21:07:27] 2026-01-10 12:06:28,605 | INFO     | ***************************************
[2026-01-10 21:07:27] 2026-01-10 12:06:29,107 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2026-01-10 21:07:27] 2026-01-10 12:06:29,116 | INFO     | sufficient remaining disk space (97053048832 B)
[2026-01-10 21:07:27] 2026-01-10 12:06:29,116 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 21:07:27] 2026-01-10 12:06:29,116 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 21:07:27] 2026-01-10 12:06:29,116 | INFO     | update_server=False
[2026-01-10 21:07:27] 2026-01-10 12:06:29,117 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 21:07:27] 2026-01-10 12:06:29,117 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 21:07:27] 2026-01-10 12:06:29,117 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 21:07:27] 2026-01-10 12:06:29,117 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 21:07:27] 2026-01-10 12:06:29,195 | INFO     | all job control threads have been joined
[2026-01-10 21:07:27] 2026-01-10 12:06:29,438 | INFO     | all payload control threads have been joined
[2026-01-10 21:07:27] 2026-01-10 12:06:29,601 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 21:07:27] 2026-01-10 12:06:29,601 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 21:07:27] 2026-01-10 12:06:29,601 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 21:07:27] 2026-01-10 12:06:29,601 | INFO     | will abort loop
[2026-01-10 21:07:27] 2026-01-10 12:06:29,745 | INFO     | all data control threads have been joined
[2026-01-10 21:07:27] 2026-01-10 12:06:30,121 | INFO     | [job] retrieve thread has finished
[2026-01-10 21:07:27] 2026-01-10 12:06:30,122 | INFO     | [job] queue monitor thread has finished
[2026-01-10 21:07:27] 2026-01-10 12:06:30,143 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 21:07:27] 2026-01-10 12:06:30,200 | INFO     | [job] control thread has finished
[2026-01-10 21:07:27] 2026-01-10 12:06:30,307 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 21:07:27] 2026-01-10 12:06:30,408 | INFO     | [job] validate thread has finished
[2026-01-10 21:07:27] 2026-01-10 12:06:30,409 | INFO     | [payload] failed_post thread has finished
[2026-01-10 21:07:27] 2026-01-10 12:06:30,443 | INFO     | [payload] control thread has finished
[2026-01-10 21:07:27] 2026-01-10 12:06:30,606 | INFO     | [job] job monitor thread has finished
[2026-01-10 21:07:27] 2026-01-10 12:06:30,750 | INFO     | [data] control thread has finished
[2026-01-10 21:07:27] 2026-01-10 12:06:30,873 | INFO     | [data] copytool_in thread has finished
[2026-01-10 21:07:27] 2026-01-10 12:06:31,005 | INFO     | [payload] validate_post thread has finished
[2026-01-10 21:07:27] 2026-01-10 12:06:31,122 | INFO     | [data] copytool_out thread has finished
[2026-01-10 21:07:27] 2026-01-10 12:06:31,160 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 21:07:27] 2026-01-10 12:06:33,122 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 21:07:27] 2026-01-10 12:06:39,275 | INFO     | job.realtimelogging is not enabled
[2026-01-10 21:07:27] 2026-01-10 12:06:40,276 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 21:07:27] 2026-01-10 12:06:59,132 | INFO     | PID=939755 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 21:07:27] 2026-01-10 12:06:59,132 | INFO     | .. there are 2 such processes running
[2026-01-10 21:07:27] 2026-01-10 12:06:59,132 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 21:07:27] 2026-01-10 12:06:59,132 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 21:07:27] 2026-01-10 12:06:59,132 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 21:07:27] 2026-01-10 12:07:20,938 | INFO     | [monitor] cgroup control has ended
[2026-01-10 21:07:27] 2026-01-10 12:07:22,824 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140475334006592)>', '<ExcThread(monitor, started 140474815866624)>']
[2026-01-10 21:07:27] 2026-01-10 12:07:23,247 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 21:07:27] 2026-01-10 12:07:23,247 | INFO     | [monitor] control thread has ended
[2026-01-10 21:07:27] 2026-01-10 12:07:27,849 | INFO     | all workflow threads have been joined
[2026-01-10 21:07:27] 2026-01-10 12:07:27,849 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 21:07:27] 2026-01-10 12:07:27,849 | INFO     | traces error code: 0
[2026-01-10 21:07:27] 2026-01-10 12:07:27,849 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 21:07:27] 2026-01-10 12:07:27,918 [wrapper] ==== pilot stdout END ====
[2026-01-10 21:07:27] 2026-01-10 12:07:27,920 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 21:07:27] 2026-01-10 12:07:27,921 [wrapper] pilotpid: 939755
[2026-01-10 21:07:27] 2026-01-10 12:07:27,922 [wrapper] Pilot exit status: 0
[2026-01-10 21:07:27] 2026-01-10 12:07:27,927 [wrapper] pandaids: 6963187118
[2026-01-10 21:07:27] 2026-01-10 12:07:27,943 [wrapper] cleanup supervisor_pilot  992634 939756
[2026-01-10 21:07:27] 2026-01-10 12:07:27,945 [wrapper] Test setup, not cleaning
[2026-01-10 21:07:27] 2026-01-10 12:07:27,946 [wrapper] apfmon messages muted
[2026-01-10 21:07:27] 2026-01-10 12:07:27,947 [wrapper] ==== wrapper stdout END ====
[2026-01-10 21:07:27] 2026-01-10 12:07:27,949 [wrapper] ==== wrapper stderr END ====
[2026-01-10 21:07:27]  *** Error codes and diagnostics ***
[2026-01-10 21:07:27]     "exeErrorCode": 0,
[2026-01-10 21:07:27]     "exeErrorDiag": "",
[2026-01-10 21:07:27]     "pilotErrorCode": 0,
[2026-01-10 21:07:27]     "pilotErrorDiag": "",
[2026-01-10 21:07:27]  *** Listing of results directory ***
[2026-01-10 21:07:27] total 442248
[2026-01-10 21:07:27] -rwx------. 1 boinc boinc     36322 Jan  9 10:01 runpilot2-wrapper.sh
[2026-01-10 21:07:27] -rw-r--r--. 1 boinc boinc    579449 Jan  9 10:06 pilot3.tar.gz
[2026-01-10 21:07:27] -rw-r--r--. 1 boinc boinc      5112 Jan  9 10:06 queuedata.json
[2026-01-10 21:07:27] -rw-r--r--. 1 boinc boinc       100 Jan 10 18:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 21:07:27] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 18:38 run_atlas
[2026-01-10 21:07:27] -rw-r--r--. 1 boinc boinc       105 Jan 10 18:38 job.xml
[2026-01-10 21:07:27] -rw-r--r--. 1 boinc boinc      9344 Jan 10 18:38 init_data.xml
[2026-01-10 21:07:27] -rw-r--r--. 2 boinc boinc 225045758 Jan 10 18:38 EVNT.47898824._001418.pool.root.1
[2026-01-10 21:07:27] -rw-r--r--. 2 boinc boinc     15847 Jan 10 18:38 start_atlas.sh
[2026-01-10 21:07:27] drwxrwx--x. 2 boinc boinc        68 Jan 10 18:38 shared
[2026-01-10 21:07:27] -rw-r--r--. 2 boinc boinc    592401 Jan 10 18:38 input.tar.gz
[2026-01-10 21:07:27] -rw-r--r--. 1 boinc boinc         0 Jan 10 18:38 boinc_lockfile
[2026-01-10 21:07:27] -rw-r--r--. 1 boinc boinc      2519 Jan 10 18:38 pandaJob.out
[2026-01-10 21:07:27] -rw-------. 1 boinc boinc    989548 Jan 10 18:39 agis_schedconf.cvmfs.json
[2026-01-10 21:07:27] -rw-------. 1 boinc boinc   1516240 Jan 10 18:39 agis_ddmendpoints.agis.ALL.json
[2026-01-10 21:07:27] drwx------. 5 boinc boinc      4096 Jan 10 18:39 pilot3
[2026-01-10 21:07:27] -rw-------. 1 boinc boinc 220612161 Jan 10 21:05 HITS.47898826._036992.pool.root.1
[2026-01-10 21:07:27] -rw-r--r--. 1 boinc boinc       529 Jan 10 21:05 boinc_task_state.xml
[2026-01-10 21:07:27] -rw-------. 1 boinc boinc      1022 Jan 10 21:06 memory_monitor_summary.json
[2026-01-10 21:07:27] -rw-------. 1 boinc boinc    364765 Jan 10 21:06 log.47898826._036992.job.log.tgz.1
[2026-01-10 21:07:27] -rw-------. 1 boinc boinc        95 Jan 10 21:06 pilot_heartbeat.json
[2026-01-10 21:07:27] -rw-------. 1 boinc boinc      7779 Jan 10 21:06 heartbeat.json
[2026-01-10 21:07:27] -rw-r--r--. 1 boinc boinc      8192 Jan 10 21:07 boinc_mmap_file
[2026-01-10 21:07:27] -rw-r--r--. 1 boinc boinc        27 Jan 10 21:07 wrapper_checkpoint.txt
[2026-01-10 21:07:27] -rw-------. 1 boinc boinc      5080 Jan 10 21:07 pilotlog.txt
[2026-01-10 21:07:27] -rw-------. 1 boinc boinc   1281418 Jan 10 21:07 log.47898826._036992.job.log.1
[2026-01-10 21:07:27] -rw-------. 1 boinc boinc       357 Jan 10 21:07 output.list
[2026-01-10 21:07:27] -rw-r--r--. 1 boinc boinc       620 Jan 10 21:07 runtime_log
[2026-01-10 21:07:27] -rw-------. 1 boinc boinc   1669120 Jan 10 21:07 result.tar.gz
[2026-01-10 21:07:27] -rw-------. 1 boinc boinc       641 Jan 10 21:07 ZH8LDmx3Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmqgKDmQ6nH0m.diag
[2026-01-10 21:07:27] -rw-r--r--. 1 boinc boinc      8765 Jan 10 21:07 runtime_log.err
[2026-01-10 21:07:27] -rw-r--r--. 1 boinc boinc     21374 Jan 10 21:07 stderr.txt
[2026-01-10 21:07:27] HITS file was successfully produced:
[2026-01-10 21:07:28] -rw-------. 1 boinc boinc 220612161 Jan 10 21:05 shared/HITS.pool.root.1
[2026-01-10 21:07:28]  *** Contents of shared directory: ***
[2026-01-10 21:07:28] total 437448
[2026-01-10 21:07:28] -rw-r--r--. 2 boinc boinc 225045758 Jan 10 18:38 ATLAS.root_0
[2026-01-10 21:07:28] -rw-r--r--. 2 boinc boinc     15847 Jan 10 18:38 start_atlas.sh
[2026-01-10 21:07:28] -rw-r--r--. 2 boinc boinc    592401 Jan 10 18:38 input.tar.gz
[2026-01-10 21:07:28] -rw-------. 1 boinc boinc 220612161 Jan 10 21:05 HITS.pool.root.1
[2026-01-10 21:07:28] -rw-------. 1 boinc boinc   1669120 Jan 10 21:07 result.tar.gz
21:07:29 (935977): run_atlas exited; CPU time 49756.076531
21:07:29 (935977): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN