Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:37:42 (24480): wrapper (7.7.26015): starting
12:37:42 (24480): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 12:37:42] Arguments: --nthreads 8
[2026-01-09 12:37:42] Threads: 8
[2026-01-09 12:37:42] Checking for CVMFS
[2026-01-09 12:37:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 12:37:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 12:37:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 12:37:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 12:37:43] 2.11.2.0 3869 167063 139984 154951 1 64 12350250 18432001 1833 130560 0 116167115 99.987 5969340 33050 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 12:37:43] CVMFS is ok
[2026-01-09 12:37:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 12:37:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 12:37:43] Further information can be found at the LHC@home message board.
[2026-01-09 12:37:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 12:37:43] Checking for apptainer binary...
[2026-01-09 12:37:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 12:37:43] Running /usr/bin/apptainer --version
[2026-01-09 12:37:43] apptainer version 1.3.2-1.el7
[2026-01-09 12:37:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 12:37:43] c-206-12.aglt2.org
[2026-01-09 12:37:43] apptainer works
[2026-01-09 12:37:43] Set ATHENA_PROC_NUMBER=8
[2026-01-09 12:37:43] Set ATHENA_CORE_NUMBER=8
[2026-01-09 12:37:43] Starting ATLAS job with PandaID=6963186577
[2026-01-09 12:37:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:00:02 (24480): BOINC client no longer exists - exiting
15:00:02 (24480): timer handler: client dead, exiting
15:12:50 (14035): wrapper (7.7.26015): starting
15:12:50 (14035): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 15:12:50] Arguments: --nthreads 8
[2026-01-09 15:12:50] Threads: 8
[2026-01-09 15:12:50] This job has been restarted, cleaning up previous attempt
[2026-01-09 15:12:50] Checking for CVMFS
[2026-01-09 15:12:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 15:12:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 15:12:50] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 15:12:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 15:12:51] 2.11.2.0 3869 167218 141276 154955 2 39 12370207 18432001 1 130560 0 116301403 99.987 5976167 33053 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 15:12:51] CVMFS is ok
[2026-01-09 15:12:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 15:12:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 15:12:51] Further information can be found at the LHC@home message board.
[2026-01-09 15:12:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 15:12:51] Checking for apptainer binary...
[2026-01-09 15:12:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 15:12:51] Running /usr/bin/apptainer --version
[2026-01-09 15:12:51] apptainer version 1.3.2-1.el7
[2026-01-09 15:12:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 15:12:52] c-206-12.aglt2.org
[2026-01-09 15:12:52] apptainer works
[2026-01-09 15:12:52] Set ATHENA_PROC_NUMBER=8
[2026-01-09 15:12:52] Set ATHENA_CORE_NUMBER=8
[2026-01-09 15:12:52] Starting ATLAS job with PandaID=6963186577
[2026-01-09 15:12:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 19:36:48]  *** The last 200 lines of the pilot log: ***
[2026-01-09 19:36:48] 2026-01-10 00:36:15,573 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 19:36:48] 2026-01-10 00:36:15,576 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2477.875
[2026-01-09 19:36:48] 2026-01-10 00:36:15,579 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963186577/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 19:36:48] 2026-01-10 00:36:15,579 | INFO     | extracted standard info from prmon json
[2026-01-09 19:36:48] 2026-01-10 00:36:15,580 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 19:36:48] 2026-01-10 00:36:15,580 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 19:36:48] 2026-01-10 00:36:15,580 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 19:36:48] 2026-01-10 00:36:15,580 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 19:36:48] 2026-01-10 00:36:15,584 | INFO     | fitting pss+swap vs Time
[2026-01-09 19:36:48] 2026-01-10 00:36:15,584 | INFO     | sum of square deviations: 5387301010.0
[2026-01-09 19:36:48] 2026-01-10 00:36:15,586 | INFO     | sum of deviations: 34051799176.000004
[2026-01-09 19:36:48] 2026-01-10 00:36:15,586 | INFO     | mean x: 1767997480.0
[2026-01-09 19:36:48] 2026-01-10 00:36:15,586 | INFO     | mean y: 2475105.49034749
[2026-01-09 19:36:48] 2026-01-10 00:36:15,586 | INFO     | intersect: -11172600321.125565
[2026-01-09 19:36:48] 2026-01-10 00:36:15,586 | INFO     | chi2: 2.1434794999532856
[2026-01-09 19:36:48] 2026-01-10 00:36:15,587 | INFO     | sum of square deviations: 5081276667.5
[2026-01-09 19:36:48] 2026-01-10 00:36:15,588 | INFO     | sum of deviations: 50700491417.00001
[2026-01-09 19:36:48] 2026-01-10 00:36:15,588 | INFO     | mean x: 1767997327.5
[2026-01-09 19:36:48] 2026-01-10 00:36:15,588 | INFO     | mean y: 2483263.6456692913
[2026-01-09 19:36:48] 2026-01-10 00:36:15,589 | INFO     | intersect: -17638424562.043533
[2026-01-09 19:36:48] 2026-01-10 00:36:15,589 | INFO     | chi2: 1.318545555260061
[2026-01-09 19:36:48] 2026-01-10 00:36:15,589 | INFO     | current chi2=1.318545555260061 (change=38.48573987813754 %)
[2026-01-09 19:36:48] 2026-01-10 00:36:15,589 | INFO     | sum of square deviations: 4787066500.0
[2026-01-09 19:36:48] 2026-01-10 00:36:15,592 | INFO     | sum of deviations: 49317641180.99999
[2026-01-09 19:36:48] 2026-01-10 00:36:15,592 | INFO     | mean x: 1767997175.0
[2026-01-09 19:36:48] 2026-01-10 00:36:15,592 | INFO     | mean y: 2482546.578313253
[2026-01-09 19:36:48] 2026-01-10 00:36:15,592 | INFO     | intersect: -18211897864.82221
[2026-01-09 19:36:48] 2026-01-10 00:36:15,593 | INFO     | chi2: 1.3187557475567313
[2026-01-09 19:36:48] 2026-01-10 00:36:15,593 | INFO     | current chi2=1.3187557475567313 (change=-0.015941223709100553 %)
[2026-01-09 19:36:48] 2026-01-10 00:36:15,593 | INFO     | right removable region: 248
[2026-01-09 19:36:48] 2026-01-10 00:36:15,594 | INFO     | sum of square deviations: 5081276667.5
[2026-01-09 19:36:48] 2026-01-10 00:36:15,596 | INFO     | sum of deviations: -4634110341.999998
[2026-01-09 19:36:48] 2026-01-10 00:36:15,596 | INFO     | mean x: 1767997632.5
[2026-01-09 19:36:48] 2026-01-10 00:36:15,597 | INFO     | mean y: 2494238.1653543306
[2026-01-09 19:36:48] 2026-01-10 00:36:15,597 | INFO     | intersect: 1614903215.1854513
[2026-01-09 19:36:48] 2026-01-10 00:36:15,597 | INFO     | chi2: 0.8618523222628495
[2026-01-09 19:36:48] 2026-01-10 00:36:15,598 | INFO     | current chi2=0.8618523222628495 (change=59.791902731907044 %)
[2026-01-09 19:36:48] 2026-01-10 00:36:15,598 | INFO     | sum of square deviations: 4787066500.0
[2026-01-09 19:36:48] 2026-01-10 00:36:15,600 | INFO     | sum of deviations: -9009576475.0
[2026-01-09 19:36:48] 2026-01-10 00:36:15,601 | INFO     | mean x: 1767997785.0
[2026-01-09 19:36:48] 2026-01-10 00:36:15,601 | INFO     | mean y: 2496485.642570281
[2026-01-09 19:36:48] 2026-01-10 00:36:15,601 | INFO     | intersect: 3329985512.9180655
[2026-01-09 19:36:48] 2026-01-10 00:36:15,602 | INFO     | chi2: 0.8413286829272331
[2026-01-09 19:36:48] 2026-01-10 00:36:15,602 | INFO     | current chi2=0.8413286829272331 (change=2.381340608531431 %)
[2026-01-09 19:36:48] 2026-01-10 00:36:15,602 | INFO     | left removable region: 20
[2026-01-09 19:36:48] 2026-01-10 00:36:15,602 | INFO     | sum of square deviations: 3675146117.0
[2026-01-09 19:36:48] 2026-01-10 00:36:15,605 | INFO     | sum of deviations: 5097154509.999999
[2026-01-09 19:36:48] 2026-01-10 00:36:15,605 | INFO     | mean x: 1767997754.5
[2026-01-09 19:36:48] 2026-01-10 00:36:15,605 | INFO     | mean y: 2506318.6842105263
[2026-01-09 19:36:48] 2026-01-10 00:36:15,605 | INFO     | intersect: -2449575160.834158
[2026-01-09 19:36:48] 2026-01-10 00:36:15,606 | INFO     | chi2: 0.00109448515556886
[2026-01-09 19:36:48] 2026-01-10 00:36:15,606 | INFO     | current memory leak: 1.39 B/s (using 228 data points, chi2=0.00)
[2026-01-09 19:36:48] 2026-01-10 00:36:15,607 | INFO     | could have reported an average CPU frequency of 2433 MHz (12 samples)
[2026-01-09 19:36:48] 2026-01-10 00:36:15,607 | INFO     | ..............................
[2026-01-09 19:36:48] 2026-01-10 00:36:15,607 | INFO     | . Timing measurements:
[2026-01-09 19:36:48] 2026-01-10 00:36:15,607 | INFO     | . get job = 0 s
[2026-01-09 19:36:48] 2026-01-10 00:36:15,607 | INFO     | . initial setup = 1 s
[2026-01-09 19:36:48] 2026-01-10 00:36:15,608 | INFO     | . payload setup = 6 s
[2026-01-09 19:36:48] 2026-01-10 00:36:15,608 | INFO     | . stage-in = 0 s
[2026-01-09 19:36:48] 2026-01-10 00:36:15,608 | INFO     | . payload execution = 15754 s
[2026-01-09 19:36:48] 2026-01-10 00:36:15,608 | INFO     | . stage-out = 2 s
[2026-01-09 19:36:48] 2026-01-10 00:36:15,608 | INFO     | . log creation = 0 s
[2026-01-09 19:36:48] 2026-01-10 00:36:15,608 | INFO     | ..............................
[2026-01-09 19:36:48] 2026-01-10 00:36:16,059 | INFO     | 
[2026-01-09 19:36:48] 2026-01-10 00:36:16,059 | INFO     | job summary report
[2026-01-09 19:36:48] 2026-01-10 00:36:16,059 | INFO     | --------------------------------------------------
[2026-01-09 19:36:48] 2026-01-10 00:36:16,059 | INFO     | PanDA job id: 6963186577
[2026-01-09 19:36:48] 2026-01-10 00:36:16,060 | INFO     | task id: 47898826
[2026-01-09 19:36:48] 2026-01-10 00:36:16,060 | INFO     | errors: (none)
[2026-01-09 19:36:48] 2026-01-10 00:36:16,060 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 19:36:48] 2026-01-10 00:36:16,060 | INFO     | pilot state: finished 
[2026-01-09 19:36:48] 2026-01-10 00:36:16,060 | INFO     | transexitcode: 0
[2026-01-09 19:36:48] 2026-01-10 00:36:16,060 | INFO     | exeerrorcode: 0
[2026-01-09 19:36:48] 2026-01-10 00:36:16,061 | INFO     | exeerrordiag: 
[2026-01-09 19:36:48] 2026-01-10 00:36:16,061 | INFO     | exitcode: 0
[2026-01-09 19:36:48] 2026-01-10 00:36:16,061 | INFO     | exitmsg: OK
[2026-01-09 19:36:48] 2026-01-10 00:36:16,061 | INFO     | cpuconsumptiontime: 121681 s
[2026-01-09 19:36:48] 2026-01-10 00:36:16,061 | INFO     | nevents: 400
[2026-01-09 19:36:48] 2026-01-10 00:36:16,061 | INFO     | neventsw: 0
[2026-01-09 19:36:48] 2026-01-10 00:36:16,061 | INFO     | pid: 12233
[2026-01-09 19:36:48] 2026-01-10 00:36:16,062 | INFO     | pgrp: 12233
[2026-01-09 19:36:48] 2026-01-10 00:36:16,062 | INFO     | corecount: 8
[2026-01-09 19:36:48] 2026-01-10 00:36:16,062 | INFO     | event service: False
[2026-01-09 19:36:48] 2026-01-10 00:36:16,062 | INFO     | sizes: {0: 2283800, 1: 2283999, 5: 2284261, 11: 2284317, 15764: 2315443, 15765: 2315442, 15768: 2324624, 15771: 2324680, 15776: 2324874}
[2026-01-09 19:36:48] 2026-01-10 00:36:16,062 | INFO     | --------------------------------------------------
[2026-01-09 19:36:48] 2026-01-10 00:36:16,063 | INFO     | 
[2026-01-09 19:36:48] 2026-01-10 00:36:16,063 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-09 19:36:48] 2026-01-10 00:36:16,087 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 19:36:48] 2026-01-10 00:36:16,087 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 19:36:48] 2026-01-10 00:36:16,087 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 19:36:48] 2026-01-10 00:36:16,087 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 19:36:48] 2026-01-10 00:36:16,088 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 19:36:48] 2026-01-10 00:36:16,088 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 19:36:48] 2026-01-10 00:36:16,088 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 19:36:48] 2026-01-10 00:36:16,088 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 19:36:48] 2026-01-10 00:36:16,088 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 19:36:48] 2026-01-10 00:36:16,088 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 19:36:48] 2026-01-10 00:36:16,089 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 19:36:48] 2026-01-10 00:36:16,089 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 19:36:48] 2026-01-10 00:36:16,089 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 19:36:48] 2026-01-10 00:36:16,089 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 19:36:48] 2026-01-10 00:36:16,089 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 19:36:48] 2026-01-10 00:36:16,090 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 19:36:48] 2026-01-10 00:36:16,090 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 19:36:48] 2026-01-10 00:36:16,090 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 19:36:48] 2026-01-10 00:36:16,090 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 19:36:48] 2026-01-10 00:36:16,090 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 19:36:48] 2026-01-10 00:36:16,091 | INFO     | job 6963186577 has completed (purged errors)
[2026-01-09 19:36:48] 2026-01-10 00:36:16,091 | INFO     | overall cleanup function is called
[2026-01-09 19:36:48] 2026-01-10 00:36:17,099 | INFO     | --- collectZombieJob: --- 10, [12233]
[2026-01-09 19:36:48] 2026-01-10 00:36:17,099 | INFO     | zombie collector waiting for pid 12233
[2026-01-09 19:36:48] 2026-01-10 00:36:17,100 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 19:36:48] 2026-01-10 00:36:17,100 | INFO     | collected zombie processes
[2026-01-09 19:36:48] 2026-01-10 00:36:17,100 | INFO     | will attempt to kill all subprocesses of pid=12233
[2026-01-09 19:36:48] 2026-01-10 00:36:17,261 | INFO     | process IDs to be killed: [12233] (in reverse order)
[2026-01-09 19:36:48] 2026-01-10 00:36:17,327 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 19:36:48] 2026-01-10 00:36:17,327 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 19:36:48] 2026-01-10 00:36:17,333 | INFO     | did not find any defunct processes belonging to 12233
[2026-01-09 19:36:48] 2026-01-10 00:36:17,396 | INFO     | did not find any defunct processes belonging to 12233
[2026-01-09 19:36:48] 2026-01-10 00:36:17,397 | INFO     | ready for new job
[2026-01-09 19:36:48] 2026-01-10 00:36:17,397 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 19:36:48] 2026-01-10 00:36:17,399 | INFO     | ***************************************
[2026-01-09 19:36:48] 2026-01-10 00:36:17,399 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 19:36:48] 2026-01-10 00:36:17,399 | INFO     | ***************************************
[2026-01-09 19:36:48] 2026-01-10 00:36:17,400 | INFO     | 
[2026-01-09 19:36:48] 2026-01-10 00:36:17,401 | INFO     | architecture information:
[2026-01-09 19:36:48] 2026-01-10 00:36:17,401 | INFO     | executing command: cat /etc/os-release
[2026-01-09 19:36:48] 2026-01-10 00:36:17,413 | INFO     | cat /etc/os-release:
[2026-01-09 19:36:48] NAME="CentOS Linux"
[2026-01-09 19:36:48] VERSION="7 (Core)"
[2026-01-09 19:36:48] ID="centos"
[2026-01-09 19:36:48] ID_LIKE="rhel fedora"
[2026-01-09 19:36:48] VERSION_ID="7"
[2026-01-09 19:36:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 19:36:48] ANSI_COLOR="0;31"
[2026-01-09 19:36:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 19:36:48] HOME_URL="https://www.centos.org/"
[2026-01-09 19:36:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 19:36:48] 
[2026-01-09 19:36:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 19:36:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 19:36:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 19:36:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 19:36:48] 
[2026-01-09 19:36:48] 2026-01-10 00:36:17,413 | INFO     | ***************************************
[2026-01-09 19:36:48] 2026-01-10 00:36:17,916 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-09 19:36:48] 2026-01-10 00:36:17,930 | INFO     | sufficient remaining disk space (28264366080 B)
[2026-01-09 19:36:48] 2026-01-10 00:36:17,931 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 19:36:48] 2026-01-10 00:36:17,931 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 19:36:48] 2026-01-10 00:36:17,931 | INFO     | update_server=False
[2026-01-09 19:36:48] 2026-01-10 00:36:17,931 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 19:36:48] 2026-01-10 00:36:18,035 | INFO     | all data control threads have been joined
[2026-01-09 19:36:48] 2026-01-10 00:36:18,058 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 19:36:48] 2026-01-10 00:36:18,059 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 19:36:48] 2026-01-10 00:36:18,059 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:36:48] 2026-01-10 00:36:18,059 | INFO     | will abort loop
[2026-01-09 19:36:48] 2026-01-10 00:36:18,538 | INFO     | all payload control threads have been joined
[2026-01-09 19:36:48] 2026-01-10 00:36:18,658 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 19:36:48] 2026-01-10 00:36:18,937 | INFO     | [job] retrieve thread has finished
[2026-01-09 19:36:48] 2026-01-10 00:36:18,991 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 19:36:48] 2026-01-10 00:36:19,042 | INFO     | [data] control thread has finished
[2026-01-09 19:36:48] 2026-01-10 00:36:19,064 | INFO     | [job] job monitor thread has finished
[2026-01-09 19:36:48] 2026-01-10 00:36:19,081 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 19:36:48] 2026-01-10 00:36:19,111 | INFO     | [payload] failed_post thread has finished
[2026-01-09 19:36:48] 2026-01-10 00:36:19,474 | INFO     | [data] copytool_in thread has finished
[2026-01-09 19:36:48] 2026-01-10 00:36:19,485 | INFO     | all job control threads have been joined
[2026-01-09 19:36:48] 2026-01-10 00:36:19,544 | INFO     | [payload] control thread has finished
[2026-01-09 19:36:48] 2026-01-10 00:36:19,587 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 19:36:48] 2026-01-10 00:36:19,907 | INFO     | [job] validate thread has finished
[2026-01-09 19:36:48] 2026-01-10 00:36:19,916 | INFO     | [payload] validate_post thread has finished
[2026-01-09 19:36:48] 2026-01-10 00:36:20,384 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 19:36:48] 2026-01-10 00:36:20,492 | INFO     | [job] control thread has finished
[2026-01-09 19:36:48] 2026-01-10 00:36:20,664 | INFO     | [data] copytool_out thread has finished
[2026-01-09 19:36:48] 2026-01-10 00:36:20,719 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:36:48] 2026-01-10 00:36:21,266 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 19:36:48] 2026-01-10 00:36:21,725 | INFO     | [job] queue monitor thread has finished
[2026-01-09 19:36:48] 2026-01-10 00:36:25,276 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 19:36:48] 2026-01-10 00:36:29,690 | INFO     | [monitor] cgroup control has ended
[2026-01-09 19:36:48] 2026-01-10 00:36:29,988 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140499954698048)>', '<ExcThread(monitor, started 140499251885824)>']
[2026-01-09 19:36:48] 2026-01-10 00:36:34,989 | INFO     | all workflow threads have been joined
[2026-01-09 19:36:48] 2026-01-10 00:36:34,990 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 19:36:48] 2026-01-10 00:36:34,990 | INFO     | traces error code: 0
[2026-01-09 19:36:48] 2026-01-10 00:36:34,990 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 19:36:48] 2026-01-10 00:36:48,339 | INFO     | PID=25388 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 19:36:48] 2026-01-10 00:36:48,340 | INFO     | .. there are 3 such processes running
[2026-01-09 19:36:48] 2026-01-10 00:36:48,340 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 19:36:48] 2026-01-10 00:36:48,340 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 19:36:48] 2026-01-10 00:36:48,340 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 19:36:48] 2026-01-10 00:36:48,341 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 19:36:48] 2026-01-10 00:36:48,341 | INFO     | [monitor] control thread has ended
[2026-01-09 19:36:48] 2026-01-10 00:36:48,459 [wrapper] ==== pilot stdout END ====
[2026-01-09 19:36:48] 2026-01-10 00:36:48,461 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 19:36:48] 2026-01-10 00:36:48,464 [wrapper] pilotpid: 25388
[2026-01-09 19:36:48] 2026-01-10 00:36:48,466 [wrapper] Pilot exit status: 0
[2026-01-09 19:36:48] 2026-01-10 00:36:48,476 [wrapper] pandaids: 6963186577 6963186577
[2026-01-09 19:36:48] 2026-01-10 00:36:48,515 [wrapper] cleanup supervisor_pilot 21475 25390
[2026-01-09 19:36:48] 2026-01-10 00:36:48,518 [wrapper] Test setup, not cleaning
[2026-01-09 19:36:48] 2026-01-10 00:36:48,520 [wrapper] apfmon messages muted
[2026-01-09 19:36:48] 2026-01-10 00:36:48,523 [wrapper] ==== wrapper stdout END ====
[2026-01-09 19:36:48] 2026-01-10 00:36:48,526 [wrapper] ==== wrapper stderr END ====
[2026-01-09 19:36:48]  *** Error codes and diagnostics ***
[2026-01-09 19:36:48]     "exeErrorCode": 0,
[2026-01-09 19:36:48]     "exeErrorDiag": "",
[2026-01-09 19:36:48]     "pilotErrorCode": 0,
[2026-01-09 19:36:48]     "pilotErrorDiag": "",
[2026-01-09 19:36:48]  *** Listing of results directory ***
[2026-01-09 19:36:48] total 661940
[2026-01-09 19:36:48] drwx------ 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 19:36:48] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-09 19:36:48] -rwx------ 1 boincer umatlas     36322 Jan  8 20:01 runpilot2-wrapper.sh
[2026-01-09 19:36:48] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 20:06 queuedata.json
[2026-01-09 19:36:48] -rw-r--r-- 1 boincer umatlas       100 Jan  9 12:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 19:36:48] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 12:37 run_atlas
[2026-01-09 19:36:48] -rw-r--r-- 1 boincer umatlas       105 Jan  9 12:37 job.xml
[2026-01-09 19:36:48] -rw-r--r-- 3 boincer umatlas 222913346 Jan  9 12:37 EVNT.47898824._001401.pool.root.1
[2026-01-09 19:36:48] -rw-r--r-- 3 boincer umatlas 222913346 Jan  9 12:37 ATLAS.root_0
[2026-01-09 19:36:48] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 12:37 start_atlas.sh
[2026-01-09 19:36:48] drwxrwx--x 2 boincer umatlas      4096 Jan  9 12:37 shared
[2026-01-09 19:36:48] -rw-r--r-- 2 boincer umatlas    592399 Jan  9 12:37 input.tar.gz
[2026-01-09 19:36:48] -rw-r--r-- 1 boincer umatlas         0 Jan  9 12:37 boinc_lockfile
[2026-01-09 19:36:48] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 15:12 pandaJob.out
[2026-01-09 19:36:48] -rw------- 1 boincer umatlas        57 Jan  9 15:12 setup.sh.local
[2026-01-09 19:36:48] -rw------- 1 boincer umatlas    989364 Jan  9 15:13 agis_schedconf.cvmfs.json
[2026-01-09 19:36:48] -rw-r--r-- 1 boincer umatlas      5953 Jan  9 19:27 init_data.xml
[2026-01-09 19:36:48] -rw------- 1 boincer umatlas 222737816 Jan  9 19:35 HITS.47898826._036553.pool.root.1
[2026-01-09 19:36:48] -rw-r--r-- 1 boincer umatlas       531 Jan  9 19:35 boinc_task_state.xml
[2026-01-09 19:36:48] -rw------- 1 boincer umatlas        96 Jan  9 19:35 pilot_heartbeat.json
[2026-01-09 19:36:48] -rw------- 1 boincer umatlas      1054 Jan  9 19:36 memory_monitor_summary.json
[2026-01-09 19:36:48] -rw------- 1 boincer umatlas   1516240 Jan  9 19:36 agis_ddmendpoints.agis.ALL.json
[2026-01-09 19:36:48] -rw------- 1 boincer umatlas    475747 Jan  9 19:36 log.47898826._036553.job.log.tgz.1
[2026-01-09 19:36:48] -rw------- 1 boincer umatlas      7857 Jan  9 19:36 heartbeat.json
[2026-01-09 19:36:48] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 19:36 boinc_mmap_file
[2026-01-09 19:36:48] -rw-r--r-- 1 boincer umatlas        29 Jan  9 19:36 wrapper_checkpoint.txt
[2026-01-09 19:36:48] -rw------- 1 boincer umatlas       820 Jan  9 19:36 pilotlog.txt
[2026-01-09 19:36:48] -rw------- 1 boincer umatlas   2195445 Jan  9 19:36 log.47898826._036553.job.log.1
[2026-01-09 19:36:48] -rw------- 1 boincer umatlas       357 Jan  9 19:36 output.list
[2026-01-09 19:36:48] -rw-r--r-- 1 boincer umatlas       620 Jan  9 19:36 runtime_log
[2026-01-09 19:36:48] -rw------- 1 boincer umatlas   2693120 Jan  9 19:36 result.tar.gz
[2026-01-09 19:36:48] -rw-r--r-- 1 boincer umatlas      9428 Jan  9 19:36 runtime_log.err
[2026-01-09 19:36:48] -rw------- 1 boincer umatlas       788 Jan  9 19:36 by8KDmj3Fy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmP1lKDm0ujMan.diag
[2026-01-09 19:36:48] -rw-r--r-- 1 boincer umatlas     23344 Jan  9 19:36 stderr.txt
[2026-01-09 19:36:48] HITS file was successfully produced:
[2026-01-09 19:36:48] -rw------- 1 boincer umatlas 222737816 Jan  9 19:35 shared/HITS.pool.root.1
[2026-01-09 19:36:48]  *** Contents of shared directory: ***
[2026-01-09 19:36:48] total 438444
[2026-01-09 19:36:48] -rw-r--r-- 3 boincer umatlas 222913346 Jan  9 12:37 ATLAS.root_0
[2026-01-09 19:36:48] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 12:37 start_atlas.sh
[2026-01-09 19:36:48] -rw-r--r-- 2 boincer umatlas    592399 Jan  9 12:37 input.tar.gz
[2026-01-09 19:36:48] -rw------- 1 boincer umatlas 222737816 Jan  9 19:35 HITS.pool.root.1
[2026-01-09 19:36:48] -rw------- 1 boincer umatlas   2693120 Jan  9 19:36 result.tar.gz
19:36:50 (14035): run_atlas exited; CPU time 121866.300719
19:36:50 (14035): called boinc_finish(0)

</stderr_txt>
]]>

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