Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:51:22 (2599307): wrapper (7.7.26015): starting
02:51:22 (2599307): wrapper: running run_atlas (--nthreads 6)
[2026-01-10 02:51:22] Arguments: --nthreads 6
[2026-01-10 02:51:22] Threads: 6
[2026-01-10 02:51:22] Checking for CVMFS
[2026-01-10 02:51:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 02:51:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 02:51:41] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 02:51:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 02:51:42] 2.13.3.0 2288015 728 63424 154951 3 56 12029536 20971520 916 130560 0 980696 99.993 28795 16 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-01-10 02:51:42] CVMFS is ok
[2026-01-10 02:51:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 02:51:42] Checking for apptainer binary...
[2026-01-10 02:51:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 02:51:42] Running /usr/bin/apptainer --version
[2026-01-10 02:51:42] apptainer version 1.4.4-1.el9
[2026-01-10 02:51:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 02:51:42] testio006
[2026-01-10 02:51:42] apptainer works
[2026-01-10 02:51:42] Set ATHENA_PROC_NUMBER=6
[2026-01-10 02:51:42] Set ATHENA_CORE_NUMBER=6
[2026-01-10 02:51:42] Starting ATLAS job with PandaID=6963166947
[2026-01-10 02:51:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/17 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 05:09:13]  *** The last 200 lines of the pilot log: ***
[2026-01-10 05:09:14] 2026-01-09 20:08:37,239 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 05:09:14] 2026-01-09 20:08:38,628 | INFO     | time since job start (8149s) is within the limit (349056.0s)
[2026-01-10 05:09:14] 2026-01-09 20:08:38,765 | INFO     | monitor loop #591: job 0:6963166947 is in state 'finished'
[2026-01-10 05:09:14] 2026-01-09 20:08:38,765 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 05:09:14] 2026-01-09 20:08:40,633 | INFO     | time since job start (8151s) is within the limit (349056.0s)
[2026-01-10 05:09:14] 2026-01-09 20:08:41,268 | INFO     | monitor loop #592: job 0:6963166947 is in state 'finished'
[2026-01-10 05:09:14] 2026-01-09 20:08:41,268 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 05:09:14] 2026-01-09 20:08:41,509 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 05:09:14] 2026-01-09 20:08:41,512 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3960.0873124999994
[2026-01-10 05:09:14] 2026-01-09 20:08:41,514 | INFO     | using path: /var/lib/boinc/slots/17/PanDA_Pilot-6963166947/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 05:09:14] 2026-01-09 20:08:41,514 | INFO     | extracted standard info from prmon json
[2026-01-10 05:09:14] 2026-01-09 20:08:41,514 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 05:09:14] 2026-01-09 20:08:41,514 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 05:09:14] 2026-01-09 20:08:41,514 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 05:09:14] 2026-01-09 20:08:41,514 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 05:09:14] 2026-01-09 20:08:41,516 | INFO     | fitting pss+swap vs Time
[2026-01-10 05:09:14] 2026-01-09 20:08:41,516 | INFO     | sum of square deviations: 746051197.5
[2026-01-10 05:09:14] 2026-01-09 20:08:41,516 | INFO     | sum of deviations: -24238807.49999237
[2026-01-10 05:09:14] 2026-01-09 20:08:41,517 | INFO     | mean x: 1767985250.5
[2026-01-10 05:09:14] 2026-01-09 20:08:41,517 | INFO     | mean y: 2460647.5447761193
[2026-01-10 05:09:14] 2026-01-09 20:08:41,517 | INFO     | intersect: 59901550.117277235
[2026-01-10 05:09:14] 2026-01-09 20:08:41,517 | INFO     | chi2: 2.854590390649582
[2026-01-10 05:09:14] 2026-01-09 20:08:41,517 | INFO     | sum of square deviations: 665612480.0
[2026-01-10 05:09:14] 2026-01-09 20:08:41,517 | INFO     | sum of deviations: 8066965922.999994
[2026-01-10 05:09:14] 2026-01-09 20:08:41,517 | INFO     | mean x: 1767985098.0
[2026-01-10 05:09:14] 2026-01-09 20:08:41,517 | INFO     | mean y: 2475520.2713178294
[2026-01-10 05:09:14] 2026-01-09 20:08:41,518 | INFO     | intersect: -21424820341.034958
[2026-01-10 05:09:14] 2026-01-09 20:08:41,518 | INFO     | chi2: 2.2100053428040702
[2026-01-10 05:09:14] 2026-01-09 20:08:41,518 | INFO     | current chi2=2.2100053428040702 (change=22.58064939743708 %)
[2026-01-10 05:09:14] 2026-01-09 20:08:41,518 | INFO     | right removable region: 128
[2026-01-10 05:09:14] 2026-01-09 20:08:41,518 | INFO     | sum of square deviations: 665612480.0
[2026-01-10 05:09:14] 2026-01-09 20:08:41,518 | INFO     | sum of deviations: -27061259322.0
[2026-01-10 05:09:14] 2026-01-09 20:08:41,518 | INFO     | mean x: 1767985403.0
[2026-01-10 05:09:14] 2026-01-09 20:08:41,518 | INFO     | mean y: 2511482.984496124
[2026-01-10 05:09:14] 2026-01-09 20:08:41,518 | INFO     | intersect: 71882040346.52635
[2026-01-10 05:09:14] 2026-01-09 20:08:41,519 | INFO     | chi2: 0.9139304163763129
[2026-01-10 05:09:14] 2026-01-09 20:08:41,519 | INFO     | current chi2=0.9139304163763129 (change=67.98383335942142 %)
[2026-01-10 05:09:14] 2026-01-09 20:08:41,519 | INFO     | sum of square deviations: 591173875.0
[2026-01-10 05:09:14] 2026-01-09 20:08:41,519 | INFO     | sum of deviations: -23607745176.0
[2026-01-10 05:09:14] 2026-01-09 20:08:41,519 | INFO     | mean x: 1767985555.5
[2026-01-10 05:09:14] 2026-01-09 20:08:41,519 | INFO     | mean y: 2504269.5967741935
[2026-01-10 05:09:14] 2026-01-09 20:08:41,519 | INFO     | intersect: 70604664199.43604
[2026-01-10 05:09:14] 2026-01-09 20:08:41,520 | INFO     | chi2: 0.8923832099616759
[2026-01-10 05:09:14] 2026-01-09 20:08:41,520 | INFO     | current chi2=0.8923832099616759 (change=2.3576418979543976 %)
[2026-01-10 05:09:14] 2026-01-09 20:08:41,520 | INFO     | left removable region: 20
[2026-01-10 05:09:14] 2026-01-09 20:08:41,520 | INFO     | sum of square deviations: 390582207.0
[2026-01-10 05:09:14] 2026-01-09 20:08:41,520 | INFO     | sum of deviations: -2715588911.0
[2026-01-10 05:09:14] 2026-01-09 20:08:41,520 | INFO     | mean x: 1767985677.5
[2026-01-10 05:09:14] 2026-01-09 20:08:41,520 | INFO     | mean y: 2490465.4444444445
[2026-01-10 05:09:14] 2026-01-09 20:08:41,520 | INFO     | intersect: 12294710168.69842
[2026-01-10 05:09:14] 2026-01-09 20:08:41,520 | INFO     | chi2: 0.07723744795170498
[2026-01-10 05:09:14] 2026-01-09 20:08:41,520 | INFO     | current memory leak: -6.95 B/s (using 108 data points, chi2=0.08)
[2026-01-10 05:09:14] 2026-01-09 20:08:41,521 | INFO     | could have reported an average CPU frequency of 3917 MHz (8 samples)
[2026-01-10 05:09:14] 2026-01-09 20:08:41,521 | INFO     | ..............................
[2026-01-10 05:09:14] 2026-01-09 20:08:41,521 | INFO     | . Timing measurements:
[2026-01-10 05:09:14] 2026-01-09 20:08:41,521 | INFO     | . get job = 0 s
[2026-01-10 05:09:14] 2026-01-09 20:08:41,521 | INFO     | . initial setup = 4 s
[2026-01-10 05:09:14] 2026-01-09 20:08:41,521 | INFO     | . payload setup = 5 s
[2026-01-10 05:09:14] 2026-01-09 20:08:41,521 | INFO     | . stage-in = 0 s
[2026-01-10 05:09:14] 2026-01-09 20:08:41,521 | INFO     | . payload execution = 8118 s
[2026-01-10 05:09:14] 2026-01-09 20:08:41,521 | INFO     | . stage-out = 0 s
[2026-01-10 05:09:14] 2026-01-09 20:08:41,521 | INFO     | . log creation = 0 s
[2026-01-10 05:09:14] 2026-01-09 20:08:41,521 | INFO     | ..............................
[2026-01-10 05:09:14] 2026-01-09 20:08:41,590 | INFO     | 
[2026-01-10 05:09:14] 2026-01-09 20:08:41,591 | INFO     | job summary report
[2026-01-10 05:09:14] 2026-01-09 20:08:41,591 | INFO     | --------------------------------------------------
[2026-01-10 05:09:14] 2026-01-09 20:08:41,591 | INFO     | PanDA job id: 6963166947
[2026-01-10 05:09:14] 2026-01-09 20:08:41,591 | INFO     | task id: 47898826
[2026-01-10 05:09:14] 2026-01-09 20:08:41,591 | INFO     | errors: (none)
[2026-01-10 05:09:14] 2026-01-09 20:08:41,591 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 05:09:14] 2026-01-09 20:08:41,591 | INFO     | pilot state: finished 
[2026-01-10 05:09:14] 2026-01-09 20:08:41,591 | INFO     | transexitcode: 0
[2026-01-10 05:09:14] 2026-01-09 20:08:41,591 | INFO     | exeerrorcode: 0
[2026-01-10 05:09:14] 2026-01-09 20:08:41,591 | INFO     | exeerrordiag: 
[2026-01-10 05:09:14] 2026-01-09 20:08:41,591 | INFO     | exitcode: 0
[2026-01-10 05:09:14] 2026-01-09 20:08:41,591 | INFO     | exitmsg: OK
[2026-01-10 05:09:14] 2026-01-09 20:08:41,591 | INFO     | cpuconsumptiontime: 44997 s
[2026-01-10 05:09:14] 2026-01-09 20:08:41,591 | INFO     | nevents: 400
[2026-01-10 05:09:14] 2026-01-09 20:08:41,591 | INFO     | neventsw: 0
[2026-01-10 05:09:14] 2026-01-09 20:08:41,592 | INFO     | pid: 2610167
[2026-01-10 05:09:14] 2026-01-09 20:08:41,592 | INFO     | pgrp: 2610167
[2026-01-10 05:09:14] 2026-01-09 20:08:41,592 | INFO     | corecount: 6
[2026-01-10 05:09:14] 2026-01-09 20:08:41,592 | INFO     | event service: False
[2026-01-10 05:09:14] 2026-01-09 20:08:41,592 | INFO     | sizes: {0: 2283972, 5: 2284234, 11: 2284290, 8127: 2312083, 8128: 2321083, 8130: 2321139, 8137: 2321461}
[2026-01-10 05:09:14] 2026-01-09 20:08:41,592 | INFO     | --------------------------------------------------
[2026-01-10 05:09:14] 2026-01-09 20:08:41,592 | INFO     | 
[2026-01-10 05:09:14] 2026-01-09 20:08:41,592 | INFO     | executing command: ls -lF /var/lib/boinc/slots/17
[2026-01-10 05:09:14] 2026-01-09 20:08:41,609 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 05:09:14] 2026-01-09 20:08:41,609 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 05:09:14] 2026-01-09 20:08:41,609 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 05:09:14] 2026-01-09 20:08:41,609 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 05:09:14] 2026-01-09 20:08:41,609 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 05:09:14] 2026-01-09 20:08:41,609 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 05:09:14] 2026-01-09 20:08:41,609 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 05:09:14] 2026-01-09 20:08:41,609 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 05:09:14] 2026-01-09 20:08:41,609 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 05:09:14] 2026-01-09 20:08:41,610 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 05:09:14] 2026-01-09 20:08:41,610 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 05:09:14] 2026-01-09 20:08:41,610 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 05:09:14] 2026-01-09 20:08:41,610 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 05:09:14] 2026-01-09 20:08:41,610 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 05:09:14] 2026-01-09 20:08:41,610 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 05:09:14] 2026-01-09 20:08:41,610 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 05:09:14] 2026-01-09 20:08:41,610 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 05:09:14] 2026-01-09 20:08:41,610 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 05:09:14] 2026-01-09 20:08:41,610 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 05:09:14] 2026-01-09 20:08:41,610 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 05:09:14] 2026-01-09 20:08:41,610 | INFO     | job 6963166947 has completed (purged errors)
[2026-01-10 05:09:14] 2026-01-09 20:08:41,611 | INFO     | overall cleanup function is called
[2026-01-10 05:09:14] 2026-01-09 20:08:42,617 | INFO     | --- collectZombieJob: --- 10, [2610167]
[2026-01-10 05:09:14] 2026-01-09 20:08:42,618 | INFO     | zombie collector waiting for pid 2610167
[2026-01-10 05:09:14] 2026-01-09 20:08:42,618 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 05:09:14] 2026-01-09 20:08:42,618 | INFO     | collected zombie processes
[2026-01-10 05:09:14] 2026-01-09 20:08:42,618 | INFO     | will attempt to kill all subprocesses of pid=2610167
[2026-01-10 05:09:14] 2026-01-09 20:08:42,716 | INFO     | process IDs to be killed: [2610167] (in reverse order)
[2026-01-10 05:09:14] 2026-01-09 20:08:42,756 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 05:09:14] 2026-01-09 20:08:42,756 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 05:09:14] 2026-01-09 20:08:42,760 | INFO     | did not find any defunct processes belonging to 2610167
[2026-01-10 05:09:14] 2026-01-09 20:08:42,763 | INFO     | did not find any defunct processes belonging to 2610167
[2026-01-10 05:09:14] 2026-01-09 20:08:42,763 | INFO     | ready for new job
[2026-01-10 05:09:14] 2026-01-09 20:08:42,763 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 05:09:14] 2026-01-09 20:08:42,764 | INFO     | ***************************************
[2026-01-10 05:09:14] 2026-01-09 20:08:42,764 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 05:09:14] 2026-01-09 20:08:42,765 | INFO     | ***************************************
[2026-01-10 05:09:14] 2026-01-09 20:08:42,765 | INFO     | 
[2026-01-10 05:09:14] 2026-01-09 20:08:42,766 | INFO     | architecture information:
[2026-01-10 05:09:14] 2026-01-09 20:08:42,766 | INFO     | executing command: cat /etc/os-release
[2026-01-10 05:09:14] 2026-01-09 20:08:42,778 | INFO     | cat /etc/os-release:
[2026-01-10 05:09:14] NAME="CentOS Linux"
[2026-01-10 05:09:14] VERSION="7 (Core)"
[2026-01-10 05:09:14] ID="centos"
[2026-01-10 05:09:14] ID_LIKE="rhel fedora"
[2026-01-10 05:09:14] VERSION_ID="7"
[2026-01-10 05:09:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 05:09:14] ANSI_COLOR="0;31"
[2026-01-10 05:09:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 05:09:14] HOME_URL="https://www.centos.org/"
[2026-01-10 05:09:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 05:09:14] 
[2026-01-10 05:09:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 05:09:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 05:09:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 05:09:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 05:09:14] 
[2026-01-10 05:09:14] 2026-01-09 20:08:42,778 | INFO     | ***************************************
[2026-01-10 05:09:14] 2026-01-09 20:08:43,281 | INFO     | executing command: df -mP /var/lib/boinc/slots/17
[2026-01-10 05:09:14] 2026-01-09 20:08:43,293 | INFO     | sufficient remaining disk space (92702507008 B)
[2026-01-10 05:09:14] 2026-01-09 20:08:43,293 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 05:09:14] 2026-01-09 20:08:43,294 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 05:09:14] 2026-01-09 20:08:43,294 | INFO     | update_server=False
[2026-01-10 05:09:14] 2026-01-09 20:08:43,294 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 05:09:14] 2026-01-09 20:08:43,294 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 05:09:14] 2026-01-09 20:08:43,294 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 05:09:14] 2026-01-09 20:08:43,554 | INFO     | all job control threads have been joined
[2026-01-10 05:09:14] 2026-01-09 20:08:43,771 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 05:09:14] 2026-01-09 20:08:43,771 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 05:09:14] 2026-01-09 20:08:43,771 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 05:09:14] 2026-01-09 20:08:43,771 | INFO     | will abort loop
[2026-01-10 05:09:14] 2026-01-09 20:08:44,058 | INFO     | all data control threads have been joined
[2026-01-10 05:09:14] 2026-01-09 20:08:44,299 | INFO     | [job] retrieve thread has finished
[2026-01-10 05:09:14] 2026-01-09 20:08:44,299 | INFO     | [job] queue monitor thread has finished
[2026-01-10 05:09:14] 2026-01-09 20:08:44,317 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 05:09:14] 2026-01-09 20:08:44,332 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 05:09:14] 2026-01-09 20:08:44,534 | INFO     | [payload] failed_post thread has finished
[2026-01-10 05:09:14] 2026-01-09 20:08:44,541 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 05:09:14] 2026-01-09 20:08:44,560 | INFO     | [job] control thread has finished
[2026-01-10 05:09:14] 2026-01-09 20:08:44,701 | INFO     | all payload control threads have been joined
[2026-01-10 05:09:14] 2026-01-09 20:08:44,771 | INFO     | [data] copytool_in thread has finished
[2026-01-10 05:09:14] 2026-01-09 20:08:44,773 | INFO     | [job] job monitor thread has finished
[2026-01-10 05:09:14] 2026-01-09 20:08:45,022 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 05:09:14] 2026-01-09 20:08:45,063 | INFO     | [data] control thread has finished
[2026-01-10 05:09:14] 2026-01-09 20:08:45,273 | INFO     | [payload] validate_post thread has finished
[2026-01-10 05:09:14] 2026-01-09 20:08:45,297 | INFO     | [data] copytool_out thread has finished
[2026-01-10 05:09:14] 2026-01-09 20:08:45,326 | INFO     | [job] validate thread has finished
[2026-01-10 05:09:14] 2026-01-09 20:08:45,643 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 05:09:14] 2026-01-09 20:08:45,705 | INFO     | [payload] control thread has finished
[2026-01-10 05:09:14] 2026-01-09 20:08:49,028 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 05:09:14] 2026-01-09 20:09:02,338 | INFO     | [monitor] cgroup control has ended
[2026-01-10 05:09:14] 2026-01-09 20:09:02,377 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140397767632704)>', '<ExcThread(monitor, started 140397397382912)>']
[2026-01-10 05:09:14] 2026-01-09 20:09:07,402 | INFO     | all workflow threads have been joined
[2026-01-10 05:09:14] 2026-01-09 20:09:07,402 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 05:09:14] 2026-01-09 20:09:07,402 | INFO     | traces error code: 0
[2026-01-10 05:09:14] 2026-01-09 20:09:07,402 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 05:09:14] 2026-01-09 20:09:13,809 | INFO     | PID=2603462 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 05:09:14] 2026-01-09 20:09:13,809 | INFO     | .. there are 2 such processes running
[2026-01-10 05:09:14] 2026-01-09 20:09:13,809 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 05:09:14] 2026-01-09 20:09:13,809 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 05:09:14] 2026-01-09 20:09:13,810 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 05:09:14] 2026-01-09 20:09:13,810 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 05:09:14] 2026-01-09 20:09:13,810 | INFO     | [monitor] control thread has ended
[2026-01-10 05:09:14] 2026-01-09 20:09:13,899 [wrapper] ==== pilot stdout END ====
[2026-01-10 05:09:14] 2026-01-09 20:09:13,902 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 05:09:14] 2026-01-09 20:09:13,904 [wrapper] pilotpid: 2603462
[2026-01-10 05:09:14] 2026-01-09 20:09:13,906 [wrapper] Pilot exit status: 0
[2026-01-10 05:09:14] 2026-01-09 20:09:13,913 [wrapper] pandaids: 6963166947
[2026-01-10 05:09:14] 2026-01-09 20:09:13,940 [wrapper] cleanup supervisor_pilot 2639862 2603463
[2026-01-10 05:09:14] 2026-01-09 20:09:13,942 [wrapper] Test setup, not cleaning
[2026-01-10 05:09:14] 2026-01-09 20:09:13,947 [wrapper] apfmon messages muted
[2026-01-10 05:09:14] 2026-01-09 20:09:13,949 [wrapper] ==== wrapper stdout END ====
[2026-01-10 05:09:14] 2026-01-09 20:09:13,951 [wrapper] ==== wrapper stderr END ====
[2026-01-10 05:09:14]  *** Error codes and diagnostics ***
[2026-01-10 05:09:14]     "exeErrorCode": 0,
[2026-01-10 05:09:14]     "exeErrorDiag": "",
[2026-01-10 05:09:14]     "pilotErrorCode": 0,
[2026-01-10 05:09:14]     "pilotErrorDiag": "",
[2026-01-10 05:09:14]  *** Listing of results directory ***
[2026-01-10 05:09:14] total 441560
[2026-01-10 05:09:14] -rw-r--r--. 1 boinc boinc    579449 Jan  9 09:57 pilot3.tar.gz
[2026-01-10 05:09:14] -rwx------. 1 boinc boinc     36322 Jan  9 09:59 runpilot2-wrapper.sh
[2026-01-10 05:09:14] -rw-r--r--. 1 boinc boinc      5112 Jan  9 10:02 queuedata.json
[2026-01-10 05:09:14] -rw-r--r--. 1 boinc boinc       100 Jan 10 02:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 05:09:14] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 02:51 run_atlas
[2026-01-10 05:09:14] -rw-r--r--. 1 boinc boinc       105 Jan 10 02:51 job.xml
[2026-01-10 05:09:14] -rw-r--r--. 2 boinc boinc 223561063 Jan 10 02:51 EVNT.47898824._001370.pool.root.1
[2026-01-10 05:09:14] -rw-r--r--. 2 boinc boinc     15847 Jan 10 02:51 start_atlas.sh
[2026-01-10 05:09:14] drwxrwx--x. 2 boinc boinc        68 Jan 10 02:51 shared
[2026-01-10 05:09:14] -rw-r--r--. 2 boinc boinc    592397 Jan 10 02:51 input.tar.gz
[2026-01-10 05:09:14] -rw-r--r--. 1 boinc boinc         0 Jan 10 02:51 boinc_lockfile
[2026-01-10 05:09:14] -rw-r--r--. 1 boinc boinc      2520 Jan 10 02:51 pandaJob.out
[2026-01-10 05:09:14] -rw-------. 1 boinc boinc    989356 Jan 10 02:52 agis_schedconf.cvmfs.json
[2026-01-10 05:09:14] -rw-------. 1 boinc boinc   1516240 Jan 10 02:52 agis_ddmendpoints.agis.ALL.json
[2026-01-10 05:09:14] drwx------. 5 boinc boinc      4096 Jan 10 02:52 pilot3
[2026-01-10 05:09:14] -rw-r--r--. 1 boinc boinc      9363 Jan 10 03:08 init_data.xml
[2026-01-10 05:09:14] -rw-------. 1 boinc boinc 221687769 Jan 10 05:08 HITS.47898826._035353.pool.root.1
[2026-01-10 05:09:14] -rw-r--r--. 1 boinc boinc       530 Jan 10 05:08 boinc_task_state.xml
[2026-01-10 05:09:14] -rw-------. 1 boinc boinc      1016 Jan 10 05:08 memory_monitor_summary.json
[2026-01-10 05:09:14] -rw-------. 1 boinc boinc    336645 Jan 10 05:08 log.47898826._035353.job.log.tgz.1
[2026-01-10 05:09:14] -rw-------. 1 boinc boinc      7748 Jan 10 05:08 heartbeat.json
[2026-01-10 05:09:14] -rw-r--r--. 1 boinc boinc      8192 Jan 10 05:09 boinc_mmap_file
[2026-01-10 05:09:14] -rw-r--r--. 1 boinc boinc        27 Jan 10 05:09 wrapper_checkpoint.txt
[2026-01-10 05:09:14] -rw-------. 1 boinc boinc        95 Jan 10 05:09 pilot_heartbeat.json
[2026-01-10 05:09:14] -rw-------. 1 boinc boinc       822 Jan 10 05:09 pilotlog.txt
[2026-01-10 05:09:14] -rw-------. 1 boinc boinc   1166353 Jan 10 05:09 log.47898826._035353.job.log.1
[2026-01-10 05:09:14] -rw-------. 1 boinc boinc       357 Jan 10 05:09 output.list
[2026-01-10 05:09:14] -rw-r--r--. 1 boinc boinc       620 Jan 10 05:09 runtime_log
[2026-01-10 05:09:14] -rw-------. 1 boinc boinc   1525760 Jan 10 05:09 result.tar.gz
[2026-01-10 05:09:14] -rw-r--r--. 1 boinc boinc      8791 Jan 10 05:09 runtime_log.err
[2026-01-10 05:09:14] -rw-------. 1 boinc boinc       644 Jan 10 05:09 ATjMDmM1Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmkgKDmH6wiLn.diag
[2026-01-10 05:09:14] -rw-r--r--. 1 boinc boinc     21070 Jan 10 05:09 stderr.txt
[2026-01-10 05:09:14] HITS file was successfully produced:
[2026-01-10 05:09:14] -rw-------. 1 boinc boinc 221687769 Jan 10 05:08 shared/HITS.pool.root.1
[2026-01-10 05:09:14]  *** Contents of shared directory: ***
[2026-01-10 05:09:14] total 436904
[2026-01-10 05:09:14] -rw-r--r--. 2 boinc boinc 223561063 Jan 10 02:51 ATLAS.root_0
[2026-01-10 05:09:14] -rw-r--r--. 2 boinc boinc     15847 Jan 10 02:51 start_atlas.sh
[2026-01-10 05:09:14] -rw-r--r--. 2 boinc boinc    592397 Jan 10 02:51 input.tar.gz
[2026-01-10 05:09:14] -rw-------. 1 boinc boinc 221687769 Jan 10 05:08 HITS.pool.root.1
[2026-01-10 05:09:14] -rw-------. 1 boinc boinc   1525760 Jan 10 05:09 result.tar.gz
05:09:15 (2599307): run_atlas exited; CPU time 45067.907506
05:09:15 (2599307): called boinc_finish(0)

</stderr_txt>
]]>

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