Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:19:50 (993403): wrapper (7.7.26015): starting
07:19:50 (993403): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 07:19:50] Arguments: --nthreads 3
[2026-01-10 07:19:50] Threads: 3
[2026-01-10 07:19:50] Checking for CVMFS
[2026-01-10 07:19:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 07:19:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 07:19:50] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 07:19:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 07:19:50] 2.9.2.0 187979 3430 81052 154970 2 56 23598329 36864000 0 130560 0 2082919 99.987 129312 6826 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 07:19:50] CVMFS is ok
[2026-01-10 07:19:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 07:19:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 07:19:50] Further information can be found at the LHC@home message board.
[2026-01-10 07:19:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 07:19:50] Checking for apptainer binary...
[2026-01-10 07:19:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 07:19:50] Running /usr/bin/apptainer --version
[2026-01-10 07:19:50] apptainer version 1.4.1-1.1
[2026-01-10 07:19:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 07:19:50] atlasA223
[2026-01-10 07:19:50] apptainer works
[2026-01-10 07:19:50] Set ATHENA_PROC_NUMBER=3
[2026-01-10 07:19:50] Set ATHENA_CORE_NUMBER=3
[2026-01-10 07:19:50] Starting ATLAS job with PandaID=6963163346
[2026-01-10 07:19:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 09:18:08]  *** The last 200 lines of the pilot log: ***
[2026-01-10 09:18:08] 2026-01-10 08:17:34,319 | INFO     | overall cleanup function is called
[2026-01-10 09:18:08] 2026-01-10 08:17:35,325 | INFO     | --- collectZombieJob: --- 10, [1003566]
[2026-01-10 09:18:08] 2026-01-10 08:17:35,325 | INFO     | zombie collector waiting for pid 1003566
[2026-01-10 09:18:08] 2026-01-10 08:17:35,326 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 09:18:08] 2026-01-10 08:17:35,326 | INFO     | collected zombie processes
[2026-01-10 09:18:08] 2026-01-10 08:17:35,326 | INFO     | will attempt to kill all subprocesses of pid=1003566
[2026-01-10 09:18:08] 2026-01-10 08:17:35,375 | INFO     | process IDs to be killed: [1003566] (in reverse order)
[2026-01-10 09:18:08] 2026-01-10 08:17:35,401 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 09:18:08] 2026-01-10 08:17:35,401 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 09:18:08] 2026-01-10 08:17:35,403 | INFO     | did not find any defunct processes belonging to 1003566
[2026-01-10 09:18:08] 2026-01-10 08:17:35,404 | INFO     | did not find any defunct processes belonging to 1003566
[2026-01-10 09:18:08] 2026-01-10 08:17:35,404 | INFO     | ready for new job
[2026-01-10 09:18:08] 2026-01-10 08:17:35,404 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 09:18:08] 2026-01-10 08:17:35,405 | INFO     | ***************************************
[2026-01-10 09:18:08] 2026-01-10 08:17:35,405 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 09:18:08] 2026-01-10 08:17:35,405 | INFO     | ***************************************
[2026-01-10 09:18:08] 2026-01-10 08:17:35,405 | INFO     | 
[2026-01-10 09:18:08] 2026-01-10 08:17:35,405 | INFO     | architecture information:
[2026-01-10 09:18:08] 2026-01-10 08:17:35,405 | INFO     | executing command: cat /etc/os-release
[2026-01-10 09:18:08] 2026-01-10 08:17:35,414 | INFO     | cat /etc/os-release:
[2026-01-10 09:18:08] NAME="CentOS Linux"
[2026-01-10 09:18:08] VERSION="7 (Core)"
[2026-01-10 09:18:08] ID="centos"
[2026-01-10 09:18:08] ID_LIKE="rhel fedora"
[2026-01-10 09:18:08] VERSION_ID="7"
[2026-01-10 09:18:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 09:18:08] ANSI_COLOR="0;31"
[2026-01-10 09:18:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 09:18:08] HOME_URL="https://www.centos.org/"
[2026-01-10 09:18:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 09:18:08] 
[2026-01-10 09:18:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 09:18:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 09:18:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 09:18:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 09:18:08] 
[2026-01-10 09:18:08] 2026-01-10 08:17:35,414 | INFO     | ***************************************
[2026-01-10 09:18:08] 2026-01-10 08:17:35,915 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 09:18:08] 2026-01-10 08:17:35,928 | INFO     | sufficient remaining disk space (382318149632 B)
[2026-01-10 09:18:08] 2026-01-10 08:17:35,928 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 09:18:08] 2026-01-10 08:17:35,928 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 09:18:08] 2026-01-10 08:17:35,928 | INFO     | update_server=False
[2026-01-10 09:18:08] 2026-01-10 08:17:35,928 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 09:18:08] 2026-01-10 08:17:35,928 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-10 09:18:08] 2026-01-10 08:17:35,929 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 09:18:08] 2026-01-10 08:17:35,929 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 09:18:08] 2026-01-10 08:17:35,929 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 09:18:08] 2026-01-10 08:17:35,929 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 09:18:08] 2026-01-10 08:17:35,929 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:18:08] 2026-01-10 08:17:35,929 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:18:08] 2026-01-10 08:17:35,929 | INFO     | aborting loop
[2026-01-10 09:18:08] 2026-01-10 08:17:36,170 | INFO     | all data control threads have been joined
[2026-01-10 09:18:08] 2026-01-10 08:17:36,275 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 09:18:08] 2026-01-10 08:17:36,541 | INFO     | all payload control threads have been joined
[2026-01-10 09:18:08] 2026-01-10 08:17:36,934 | INFO     | [job] retrieve thread has finished
[2026-01-10 09:18:08] 2026-01-10 08:17:36,934 | INFO     | [job] job monitor thread has finished
[2026-01-10 09:18:08] 2026-01-10 08:17:36,934 | INFO     | [job] queue monitor thread has finished
[2026-01-10 09:18:08] 2026-01-10 08:17:36,962 | INFO     | [data] copytool_in thread has finished
[2026-01-10 09:18:08] 2026-01-10 08:17:37,176 | INFO     | [data] control thread has finished
[2026-01-10 09:18:08] 2026-01-10 08:17:37,325 | INFO     | [payload] validate_post thread has finished
[2026-01-10 09:18:08] 2026-01-10 08:17:37,411 | INFO     | all job control threads have been joined
[2026-01-10 09:18:08] 2026-01-10 08:17:37,510 | INFO     | [job] validate thread has finished
[2026-01-10 09:18:08] 2026-01-10 08:17:37,547 | INFO     | [payload] control thread has finished
[2026-01-10 09:18:08] 2026-01-10 08:17:37,627 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 09:18:08] 2026-01-10 08:17:37,667 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 09:18:08] 2026-01-10 08:17:37,929 | INFO     | [payload] failed_post thread has finished
[2026-01-10 09:18:08] 2026-01-10 08:17:37,935 | INFO     | [data] copytool_out thread has finished
[2026-01-10 09:18:08] 2026-01-10 08:17:38,400 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 09:18:08] 2026-01-10 08:17:38,417 | INFO     | [job] control thread has finished
[2026-01-10 09:18:08] 2026-01-10 08:17:40,281 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 09:18:08] 2026-01-10 08:17:46,857 | INFO     | job.realtimelogging is not enabled
[2026-01-10 09:18:08] 2026-01-10 08:17:47,863 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 09:18:08] 2026-01-10 08:18:03,311 | INFO     | [monitor] cgroup control has ended
[2026-01-10 09:18:08] 2026-01-10 08:18:03,745 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140692010198848)>', '<ExcThread(monitor, started 140691376170752)>']
[2026-01-10 09:18:08] 2026-01-10 08:18:04,068 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 09:18:08] 2026-01-10 08:18:04,068 | INFO     | [monitor] control thread has ended
[2026-01-10 09:18:08] 2026-01-10 08:18:08,770 | INFO     | all workflow threads have been joined
[2026-01-10 09:18:08] 2026-01-10 08:18:08,770 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 09:18:08] 2026-01-10 08:18:08,771 | INFO     | traces error code: 0
[2026-01-10 09:18:08] 2026-01-10 08:18:08,771 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 09:18:08] 2026-01-10 08:18:08,820 [wrapper] ==== pilot stdout END ====
[2026-01-10 09:18:08] 2026-01-10 08:18:08,822 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 09:18:08] 2026-01-10 08:18:08,824 [wrapper] pilotpid: 997124
[2026-01-10 09:18:08] 2026-01-10 08:18:08,827 [wrapper] Pilot exit status: 0
[2026-01-10 09:18:08] 2026-01-10 08:18:08,834 [wrapper] pandaids: 6963163346
[2026-01-10 09:18:08] 2026-01-10 08:18:08,851 [wrapper] cleanup supervisor_pilot 1018035 997125
[2026-01-10 09:18:08] 2026-01-10 08:18:08,854 [wrapper] Test setup, not cleaning
[2026-01-10 09:18:08] 2026-01-10 08:18:08,856 [wrapper] apfmon messages muted
[2026-01-10 09:18:08] 2026-01-10 08:18:08,858 [wrapper] ==== wrapper stdout END ====
[2026-01-10 09:18:08] 2026-01-10 08:18:08,860 [wrapper] ==== wrapper stderr END ====
[2026-01-10 09:18:08]  *** Error codes and diagnostics ***
[2026-01-10 09:18:08]     "exeErrorCode": 0,
[2026-01-10 09:18:08]     "exeErrorDiag": "",
[2026-01-10 09:18:08]     "pilotErrorCode": 0,
[2026-01-10 09:18:08]     "pilotErrorDiag": "",
[2026-01-10 09:18:08]  *** Listing of results directory ***
[2026-01-10 09:18:08] total 440684
[2026-01-10 09:18:08] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-10 09:18:08] -rwx------ 1 boinc boinc     36322 Jan  9 01:58 runpilot2-wrapper.sh
[2026-01-10 09:18:08] -rw-r--r-- 1 boinc boinc      5112 Jan  9 02:02 queuedata.json
[2026-01-10 09:18:08] -rw-r--r-- 1 boinc boinc       100 Jan 10 07:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 09:18:08] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 07:19 run_atlas
[2026-01-10 09:18:08] -rw-r--r-- 1 boinc boinc       105 Jan 10 07:19 job.xml
[2026-01-10 09:18:08] -rw-r--r-- 2 boinc boinc 223580605 Jan 10 07:19 EVNT.47898824._001318.pool.root.1
[2026-01-10 09:18:08] -rw-r--r-- 2 boinc boinc    592399 Jan 10 07:19 input.tar.gz
[2026-01-10 09:18:08] -rw-r--r-- 2 boinc boinc     15847 Jan 10 07:19 start_atlas.sh
[2026-01-10 09:18:08] drwxrwx--x 2 boinc boinc      4096 Jan 10 07:19 shared
[2026-01-10 09:18:08] -rw-r--r-- 1 boinc boinc         0 Jan 10 07:19 boinc_setup_complete
[2026-01-10 09:18:08] -rw-r--r-- 1 boinc boinc      6446 Jan 10 07:19 init_data.xml
[2026-01-10 09:18:08] -rw-r--r-- 1 boinc boinc         0 Jan 10 07:19 boinc_lockfile
[2026-01-10 09:18:08] -rw-r--r-- 1 boinc boinc      2520 Jan 10 07:19 pandaJob.out
[2026-01-10 09:18:08] -rw------- 1 boinc boinc    989374 Jan 10 07:19 agis_schedconf.cvmfs.json
[2026-01-10 09:18:08] -rw------- 1 boinc boinc   1516240 Jan 10 07:19 agis_ddmendpoints.agis.ALL.json
[2026-01-10 09:18:08] drwx------ 5 boinc boinc      4096 Jan 10 07:19 pilot3
[2026-01-10 09:18:08] -rw-r--r-- 1 boinc boinc       529 Jan 10 09:17 boinc_task_state.xml
[2026-01-10 09:18:08] -rw------- 1 boinc boinc 221149675 Jan 10 09:17 HITS.47898826._034573.pool.root.1
[2026-01-10 09:18:08] -rw------- 1 boinc boinc      1014 Jan 10 09:17 memory_monitor_summary.json
[2026-01-10 09:18:08] -rw------- 1 boinc boinc    299216 Jan 10 09:17 log.47898826._034573.job.log.tgz.1
[2026-01-10 09:18:08] -rw------- 1 boinc boinc        95 Jan 10 09:17 pilot_heartbeat.json
[2026-01-10 09:18:08] -rw------- 1 boinc boinc      7756 Jan 10 09:17 heartbeat.json
[2026-01-10 09:18:08] -rw-r--r-- 1 boinc boinc      8192 Jan 10 09:18 boinc_mmap_file
[2026-01-10 09:18:08] -rw-r--r-- 1 boinc boinc        27 Jan 10 09:18 wrapper_checkpoint.txt
[2026-01-10 09:18:08] -rw------- 1 boinc boinc      4628 Jan 10 09:18 pilotlog.txt
[2026-01-10 09:18:08] -rw------- 1 boinc boinc   1015502 Jan 10 09:18 log.47898826._034573.job.log.1
[2026-01-10 09:18:08] -rw------- 1 boinc boinc       357 Jan 10 09:18 output.list
[2026-01-10 09:18:08] -rw-r--r-- 1 boinc boinc       620 Jan 10 09:18 runtime_log
[2026-01-10 09:18:08] -rw------- 1 boinc boinc   1331200 Jan 10 09:18 result.tar.gz
[2026-01-10 09:18:08] -rw-r--r-- 1 boinc boinc      8912 Jan 10 09:18 runtime_log.err
[2026-01-10 09:18:08] -rw------- 1 boinc boinc       662 Jan 10 09:18 qczNDmA1Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7igKDmX4cAjm.diag
[2026-01-10 09:18:08] -rw-r--r-- 1 boinc boinc     10722 Jan 10 09:18 stderr.txt
[2026-01-10 09:18:08] HITS file was successfully produced:
[2026-01-10 09:18:08] -rw------- 1 boinc boinc 221149675 Jan 10 09:17 shared/HITS.pool.root.1
[2026-01-10 09:18:08]  *** Contents of shared directory: ***
[2026-01-10 09:18:08] total 436216
[2026-01-10 09:18:08] -rw-r--r-- 2 boinc boinc 223580605 Jan 10 07:19 ATLAS.root_0
[2026-01-10 09:18:08] -rw-r--r-- 2 boinc boinc    592399 Jan 10 07:19 input.tar.gz
[2026-01-10 09:18:08] -rw-r--r-- 2 boinc boinc     15847 Jan 10 07:19 start_atlas.sh
[2026-01-10 09:18:08] -rw------- 1 boinc boinc 221149675 Jan 10 09:17 HITS.pool.root.1
[2026-01-10 09:18:08] -rw------- 1 boinc boinc   1331200 Jan 10 09:18 result.tar.gz
09:18:10 (993403): run_atlas exited; CPU time 20421.169762
09:18:10 (993403): called boinc_finish(0)

</stderr_txt>
]]>

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