Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
10:34:41 (534103): wrapper (7.7.26015): starting
10:34:41 (534103): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 10:34:41] Arguments: --nthreads 12
[2026-01-10 10:34:41] Threads: 12
[2026-01-10 10:34:41] Checking for CVMFS
[2026-01-10 10:34:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 10:34:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 10:34:41] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 10:34:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 10:34:41] 2.13.3.0 359710 509 47648 154957 0 57 4847868 6144001 0 130560 0 370402 99.983 20790 422 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-10 10:34:41] CVMFS is ok
[2026-01-10 10:34:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 10:34:41] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-10 10:34:41] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-10 10:34:41] Further information can be found at the LHC@home message board.
[2026-01-10 10:34:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 10:34:41] Checking for apptainer binary...
[2026-01-10 10:34:41] apptainer is not installed, using version from CVMFS
[2026-01-10 10:34:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 10:34:41] aeryn
[2026-01-10 10:34:41] apptainer works
[2026-01-10 10:34:41] Set ATHENA_PROC_NUMBER=12
[2026-01-10 10:34:41] Set ATHENA_CORE_NUMBER=12
[2026-01-10 10:34:41] Starting ATLAS job with PandaID=6963152396
[2026-01-10 10:34:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 11:39:03]  *** The last 200 lines of the pilot log: ***
[2026-01-10 11:39:03]  lfn=log.47898826._029197.job.log.tgz.1
[2026-01-10 11:39:03]  mtime=0
[2026-01-10 11:39:03]  protocol_id=None
[2026-01-10 11:39:03]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 11:39:03]  replicas=None
[2026-01-10 11:39:03]  scope=mc23_13p6TeV
[2026-01-10 11:39:03]  status=None
[2026-01-10 11:39:03]  status_code=0
[2026-01-10 11:39:03]  storage_token=
[2026-01-10 11:39:03]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-6963152396/log.47898826._029197.job.log.tgz.1
[2026-01-10 11:39:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9e/07/log.47898826._029197.job.log.tgz.1
[2026-01-10 11:39:03]  workdir=None
[2026-01-10 11:39:03] ]
[2026-01-10 11:39:03] 2026-01-09 22:38:10,496 | INFO     | transferring file log.47898826._029197.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-6963152396/log.47898826._029197.job.log.tgz.1 to /var/lib/boinc
[2026-01-10 11:39:03] 2026-01-09 22:38:10,497 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6963152396/log.47898826._029197.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.478988
[2026-01-10 11:39:03] 2026-01-09 22:38:10,511 | INFO     | adding to output.list: log.47898826._029197.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9e/07/log.47898826._029197.job.log.tg
[2026-01-10 11:39:03] 2026-01-09 22:38:10,512 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 11:39:03] 2026-01-09 22:38:10,512 | INFO     | summary of transferred files:
[2026-01-10 11:39:03] 2026-01-09 22:38:10,512 | INFO     |  -- lfn=log.47898826._029197.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 11:39:03] 2026-01-09 22:38:10,512 | INFO     | stage-out finished correctly
[2026-01-10 11:39:03] 2026-01-09 22:38:10,566 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 11:39:03] 2026-01-09 22:38:11,666 | INFO     | time since job start (3799s) is within the limit (349056.0s)
[2026-01-10 11:39:03] 2026-01-09 22:38:11,868 | INFO     | job 6963152396 has state=finished
[2026-01-10 11:39:03] 2026-01-09 22:38:11,868 | INFO     | preparing for final server update for job 6963152396 in state='finished'
[2026-01-10 11:39:03] 2026-01-09 22:38:12,932 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-10 11:39:03] 2026-01-09 22:38:12,933 | INFO     | this job has now completed (state=finished)
[2026-01-10 11:39:03] 2026-01-09 22:38:12,933 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 11:39:03] 2026-01-09 22:38:12,933 | INFO     | log transfer has been attempted: DONE
[2026-01-10 11:39:03] 2026-01-09 22:38:12,933 | INFO     | job 6963152396 has finished - writing final server update
[2026-01-10 11:39:03] 2026-01-09 22:38:12,933 | INFO     | total number of processed events: 400 (read)
[2026-01-10 11:39:03] 2026-01-09 22:38:12,934 | INFO     | executing command: lscpu
[2026-01-10 11:39:03] 2026-01-09 22:38:12,958 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 11:39:03] 2026-01-09 22:38:13,672 | INFO     | time since job start (3801s) is within the limit (349056.0s)
[2026-01-10 11:39:03] 2026-01-09 22:38:15,272 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 11:39:03] 2026-01-09 22:38:15,274 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 2487.9478749999994
[2026-01-10 11:39:03] 2026-01-09 22:38:15,276 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6963152396/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 11:39:03] 2026-01-09 22:38:15,276 | INFO     | extracted standard info from prmon json
[2026-01-10 11:39:03] 2026-01-09 22:38:15,277 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 11:39:03] 2026-01-09 22:38:15,277 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 11:39:03] 2026-01-09 22:38:15,277 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 11:39:03] 2026-01-09 22:38:15,277 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 11:39:03] 2026-01-09 22:38:15,278 | INFO     | fitting pss+swap vs Time
[2026-01-10 11:39:03] 2026-01-09 22:38:15,278 | INFO     | sum of square deviations: 51573060.0
[2026-01-10 11:39:03] 2026-01-09 22:38:15,278 | INFO     | sum of deviations: -4241480486.999999
[2026-01-10 11:39:03] 2026-01-09 22:38:15,278 | INFO     | mean x: 1767996464.0
[2026-01-10 11:39:03] 2026-01-09 22:38:15,278 | INFO     | mean y: 3017988.5090909093
[2026-01-10 11:39:03] 2026-01-09 22:38:15,278 | INFO     | intersect: 145406887821.73203
[2026-01-10 11:39:03] 2026-01-09 22:38:15,278 | INFO     | chi2: 0.18111808306615504
[2026-01-10 11:39:03] 2026-01-09 22:38:15,278 | INFO     | current memory leak: -82.24 B/s (using 55 data points, chi2=0.18)
[2026-01-10 11:39:03] 2026-01-09 22:38:15,279 | INFO     | could have reported an average CPU frequency of 3054 MHz (6 samples)
[2026-01-10 11:39:03] 2026-01-09 22:38:15,279 | INFO     | ..............................
[2026-01-10 11:39:03] 2026-01-09 22:38:15,279 | INFO     | . Timing measurements:
[2026-01-10 11:39:03] 2026-01-09 22:38:15,279 | INFO     | . get job = 0 s
[2026-01-10 11:39:03] 2026-01-09 22:38:15,279 | INFO     | . initial setup = 5 s
[2026-01-10 11:39:03] 2026-01-09 22:38:15,279 | INFO     | . payload setup = 3 s
[2026-01-10 11:39:03] 2026-01-09 22:38:15,279 | INFO     | . stage-in = 0 s
[2026-01-10 11:39:03] 2026-01-09 22:38:15,279 | INFO     | . payload execution = 3776 s
[2026-01-10 11:39:03] 2026-01-09 22:38:15,279 | INFO     | . stage-out = 0 s
[2026-01-10 11:39:03] 2026-01-09 22:38:15,279 | INFO     | . log creation = 0 s
[2026-01-10 11:39:03] 2026-01-09 22:38:15,279 | INFO     | ..............................
[2026-01-10 11:39:03] 2026-01-09 22:38:15,399 | INFO     | 
[2026-01-10 11:39:03] 2026-01-09 22:38:15,399 | INFO     | job summary report
[2026-01-10 11:39:03] 2026-01-09 22:38:15,399 | INFO     | --------------------------------------------------
[2026-01-10 11:39:03] 2026-01-09 22:38:15,399 | INFO     | PanDA job id: 6963152396
[2026-01-10 11:39:03] 2026-01-09 22:38:15,399 | INFO     | task id: 47898826
[2026-01-10 11:39:03] 2026-01-09 22:38:15,399 | INFO     | errors: (none)
[2026-01-10 11:39:03] 2026-01-09 22:38:15,399 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 11:39:03] 2026-01-09 22:38:15,399 | INFO     | pilot state: finished 
[2026-01-10 11:39:03] 2026-01-09 22:38:15,399 | INFO     | transexitcode: 0
[2026-01-10 11:39:03] 2026-01-09 22:38:15,399 | INFO     | exeerrorcode: 0
[2026-01-10 11:39:03] 2026-01-09 22:38:15,399 | INFO     | exeerrordiag: 
[2026-01-10 11:39:03] 2026-01-09 22:38:15,399 | INFO     | exitcode: 0
[2026-01-10 11:39:03] 2026-01-09 22:38:15,400 | INFO     | exitmsg: OK
[2026-01-10 11:39:03] 2026-01-09 22:38:15,400 | INFO     | cpuconsumptiontime: 39811 s
[2026-01-10 11:39:03] 2026-01-09 22:38:15,400 | INFO     | nevents: 400
[2026-01-10 11:39:03] 2026-01-09 22:38:15,400 | INFO     | neventsw: 0
[2026-01-10 11:39:03] 2026-01-09 22:38:15,400 | INFO     | pid: 544428
[2026-01-10 11:39:03] 2026-01-09 22:38:15,400 | INFO     | pgrp: 544428
[2026-01-10 11:39:03] 2026-01-09 22:38:15,400 | INFO     | corecount: 12
[2026-01-10 11:39:03] 2026-01-09 22:38:15,400 | INFO     | event service: False
[2026-01-10 11:39:03] 2026-01-09 22:38:15,400 | INFO     | sizes: {0: 2283804, 1: 2284003, 3: 2284265, 11: 2284293, 3783: 2310125, 3784: 2319321, 3789: 2319459}
[2026-01-10 11:39:03] 2026-01-09 22:38:15,400 | INFO     | --------------------------------------------------
[2026-01-10 11:39:03] 2026-01-09 22:38:15,400 | INFO     | 
[2026-01-10 11:39:03] 2026-01-09 22:38:15,400 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2026-01-10 11:39:03] 2026-01-09 22:38:15,417 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 11:39:03] 2026-01-09 22:38:15,418 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 11:39:03] 2026-01-09 22:38:15,418 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 11:39:03] 2026-01-09 22:38:15,418 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 11:39:03] 2026-01-09 22:38:15,418 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 11:39:03] 2026-01-09 22:38:15,418 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 11:39:03] 2026-01-09 22:38:15,418 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 11:39:03] 2026-01-09 22:38:15,418 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 11:39:03] 2026-01-09 22:38:15,418 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 11:39:03] 2026-01-09 22:38:15,419 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 11:39:03] 2026-01-09 22:38:15,419 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 11:39:03] 2026-01-09 22:38:15,419 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 11:39:03] 2026-01-09 22:38:15,419 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 11:39:03] 2026-01-09 22:38:15,419 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 11:39:03] 2026-01-09 22:38:15,419 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 11:39:03] 2026-01-09 22:38:15,419 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 11:39:03] 2026-01-09 22:38:15,419 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 11:39:03] 2026-01-09 22:38:15,419 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 11:39:03] 2026-01-09 22:38:15,419 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 11:39:03] 2026-01-09 22:38:15,419 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 11:39:03] 2026-01-09 22:38:15,420 | INFO     | job 6963152396 has completed (purged errors)
[2026-01-10 11:39:03] 2026-01-09 22:38:15,420 | INFO     | overall cleanup function is called
[2026-01-10 11:39:03] 2026-01-09 22:38:15,565 | WARNING  | process 544428 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 11:39:03] 2026-01-09 22:38:15,611 | INFO     | using path: /var/lib/boinc-client/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 11:39:03] 2026-01-09 22:38:15,670 | INFO     | number of running child processes to parent process 544428: 1
[2026-01-10 11:39:03] 2026-01-09 22:38:15,670 | INFO     | maximum number of monitored processes: 6
[2026-01-10 11:39:03] 2026-01-09 22:38:15,670 | INFO     | aborting job monitoring since job object (job id=6963152396) has expired
[2026-01-10 11:39:03] 2026-01-09 22:38:16,427 | INFO     | --- collectZombieJob: --- 10, [544428]
[2026-01-10 11:39:03] 2026-01-09 22:38:16,428 | INFO     | zombie collector waiting for pid 544428
[2026-01-10 11:39:03] 2026-01-09 22:38:16,428 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 11:39:03] 2026-01-09 22:38:16,428 | INFO     | collected zombie processes
[2026-01-10 11:39:03] 2026-01-09 22:38:16,428 | INFO     | will attempt to kill all subprocesses of pid=544428
[2026-01-10 11:39:03] 2026-01-09 22:38:16,512 | INFO     | process IDs to be killed: [544428] (in reverse order)
[2026-01-10 11:39:03] 2026-01-09 22:38:16,542 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 11:39:03] 2026-01-09 22:38:16,543 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 11:39:03] 2026-01-09 22:38:16,544 | INFO     | did not find any defunct processes belonging to 544428
[2026-01-10 11:39:03] 2026-01-09 22:38:16,546 | INFO     | did not find any defunct processes belonging to 544428
[2026-01-10 11:39:03] 2026-01-09 22:38:16,546 | INFO     | ready for new job
[2026-01-10 11:39:03] 2026-01-09 22:38:16,546 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 11:39:03] 2026-01-09 22:38:16,547 | INFO     | ***************************************
[2026-01-10 11:39:03] 2026-01-09 22:38:16,547 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 11:39:03] 2026-01-09 22:38:16,547 | INFO     | ***************************************
[2026-01-10 11:39:03] 2026-01-09 22:38:16,547 | INFO     | 
[2026-01-10 11:39:03] 2026-01-09 22:38:16,548 | INFO     | architecture information:
[2026-01-10 11:39:03] 2026-01-09 22:38:16,548 | INFO     | executing command: cat /etc/os-release
[2026-01-10 11:39:03] 2026-01-09 22:38:16,559 | INFO     | cat /etc/os-release:
[2026-01-10 11:39:03] NAME="CentOS Linux"
[2026-01-10 11:39:03] VERSION="7 (Core)"
[2026-01-10 11:39:03] ID="centos"
[2026-01-10 11:39:03] ID_LIKE="rhel fedora"
[2026-01-10 11:39:03] VERSION_ID="7"
[2026-01-10 11:39:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 11:39:03] ANSI_COLOR="0;31"
[2026-01-10 11:39:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 11:39:03] HOME_URL="https://www.centos.org/"
[2026-01-10 11:39:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 11:39:03] 
[2026-01-10 11:39:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 11:39:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 11:39:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 11:39:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 11:39:03] 
[2026-01-10 11:39:03] 2026-01-09 22:38:16,559 | INFO     | ***************************************
[2026-01-10 11:39:03] 2026-01-09 22:38:17,062 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2026-01-10 11:39:03] 2026-01-09 22:38:17,076 | INFO     | sufficient remaining disk space (74393321472 B)
[2026-01-10 11:39:03] 2026-01-09 22:38:17,076 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 11:39:03] 2026-01-09 22:38:17,077 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 11:39:03] 2026-01-09 22:38:17,077 | INFO     | update_server=False
[2026-01-10 11:39:03] 2026-01-09 22:38:17,077 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 11:39:03] 2026-01-09 22:38:17,077 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 11:39:03] 2026-01-09 22:38:17,077 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 11:39:03] 2026-01-09 22:38:17,077 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 11:39:03] 2026-01-09 22:38:17,078 | INFO     | aborting loop
[2026-01-10 11:39:03] 2026-01-09 22:38:17,656 | INFO     | all data control threads have been joined
[2026-01-10 11:39:03] 2026-01-09 22:38:18,082 | INFO     | [job] retrieve thread has finished
[2026-01-10 11:39:03] 2026-01-09 22:38:18,083 | INFO     | [job] queue monitor thread has finished
[2026-01-10 11:39:03] 2026-01-09 22:38:18,083 | INFO     | [job] job monitor thread has finished
[2026-01-10 11:39:03] 2026-01-09 22:38:18,203 | INFO     | [payload] validate_post thread has finished
[2026-01-10 11:39:03] 2026-01-09 22:38:18,312 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 11:39:03] 2026-01-09 22:38:18,437 | INFO     | all job control threads have been joined
[2026-01-10 11:39:03] 2026-01-09 22:38:18,520 | INFO     | all payload control threads have been joined
[2026-01-10 11:39:03] 2026-01-09 22:38:18,577 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 11:39:03] 2026-01-09 22:38:18,608 | INFO     | [payload] failed_post thread has finished
[2026-01-10 11:39:03] 2026-01-09 22:38:18,662 | INFO     | [data] control thread has finished
[2026-01-10 11:39:03] 2026-01-09 22:38:19,146 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 11:39:03] 2026-01-09 22:38:19,443 | INFO     | [job] control thread has finished
[2026-01-10 11:39:03] 2026-01-09 22:38:19,492 | INFO     | [data] copytool_in thread has finished
[2026-01-10 11:39:03] 2026-01-09 22:38:19,516 | INFO     | [job] validate thread has finished
[2026-01-10 11:39:03] 2026-01-09 22:38:19,525 | INFO     | [payload] control thread has finished
[2026-01-10 11:39:03] 2026-01-09 22:38:19,563 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 11:39:03] 2026-01-09 22:38:20,582 | INFO     | [data] copytool_out thread has finished
[2026-01-10 11:39:03] 2026-01-09 22:38:21,080 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 11:39:03] 2026-01-09 22:38:27,928 | INFO     | job.realtimelogging is not enabled
[2026-01-10 11:39:03] 2026-01-09 22:38:28,930 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 11:39:03] 2026-01-09 22:38:46,871 | INFO     | PID=537885 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 11:39:03] 2026-01-09 22:38:46,872 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 11:39:03] 2026-01-09 22:38:46,872 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 11:39:03] 2026-01-09 22:38:46,872 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 11:39:03] 2026-01-09 22:38:57,479 | INFO     | [monitor] cgroup control has ended
[2026-01-10 11:39:03] 2026-01-09 22:38:58,295 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140460595996480)>', '<ExcThread(monitor, started 140459926091520)>']
[2026-01-10 11:39:03] 2026-01-09 22:38:58,933 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 11:39:03] 2026-01-09 22:38:58,933 | INFO     | [monitor] control thread has ended
[2026-01-10 11:39:03] 2026-01-09 22:39:03,321 | INFO     | all workflow threads have been joined
[2026-01-10 11:39:03] 2026-01-09 22:39:03,321 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 11:39:03] 2026-01-09 22:39:03,321 | INFO     | traces error code: 0
[2026-01-10 11:39:03] 2026-01-09 22:39:03,321 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 11:39:03] 2026-01-09 22:39:03,400 [wrapper] ==== pilot stdout END ====
[2026-01-10 11:39:03] 2026-01-09 22:39:03,402 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 11:39:03] 2026-01-09 22:39:03,404 [wrapper] pilotpid: 537885
[2026-01-10 11:39:03] 2026-01-09 22:39:03,406 [wrapper] Pilot exit status: 0
[2026-01-10 11:39:03] 2026-01-09 22:39:03,415 [wrapper] pandaids: 6963152396
[2026-01-10 11:39:03] 2026-01-09 22:39:03,443 [wrapper] cleanup supervisor_pilot  553668 537886
[2026-01-10 11:39:03] 2026-01-09 22:39:03,445 [wrapper] Test setup, not cleaning
[2026-01-10 11:39:03] 2026-01-09 22:39:03,448 [wrapper] apfmon messages muted
[2026-01-10 11:39:03] 2026-01-09 22:39:03,450 [wrapper] ==== wrapper stdout END ====
[2026-01-10 11:39:03] 2026-01-09 22:39:03,453 [wrapper] ==== wrapper stderr END ====
[2026-01-10 11:39:03]  *** Error codes and diagnostics ***
[2026-01-10 11:39:03]     "exeErrorCode": 0,
[2026-01-10 11:39:03]     "exeErrorDiag": "",
[2026-01-10 11:39:03]     "pilotErrorCode": 0,
[2026-01-10 11:39:03]     "pilotErrorDiag": "",
[2026-01-10 11:39:03]  *** Listing of results directory ***
[2026-01-10 11:39:03] total 434832
[2026-01-10 11:39:03] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:02 pilot3.tar.gz
[2026-01-10 11:39:03] -rwx------ 1 boinc boinc     36322 Jan  9 05:06 runpilot2-wrapper.sh
[2026-01-10 11:39:03] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:09 queuedata.json
[2026-01-10 11:39:03] -rw-r--r-- 1 boinc boinc       100 Jan 10 10:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 11:39:03] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 10:34 run_atlas
[2026-01-10 11:39:03] -rw-r--r-- 1 boinc boinc       105 Jan 10 10:34 job.xml
[2026-01-10 11:39:03] drwxrwx--x 2 boinc boinc        68 Jan 10 10:34 shared
[2026-01-10 11:39:03] -rw-r--r-- 2 boinc boinc    592397 Jan 10 10:34 input.tar.gz
[2026-01-10 11:39:03] -rw-r--r-- 2 boinc boinc 224187894 Jan 10 10:34 EVNT.47898824._000868.pool.root.1
[2026-01-10 11:39:03] -rw-r--r-- 2 boinc boinc     15847 Jan 10 10:34 start_atlas.sh
[2026-01-10 11:39:03] -rw-r--r-- 1 boinc boinc      8860 Jan 10 10:34 init_data.xml
[2026-01-10 11:39:03] -rw-r--r-- 1 boinc boinc         0 Jan 10 10:34 boinc_setup_complete
[2026-01-10 11:39:03] -rw-r--r-- 1 boinc boinc         0 Jan 10 10:34 boinc_lockfile
[2026-01-10 11:39:03] -rw-r--r-- 1 boinc boinc      2518 Jan 10 10:34 pandaJob.out
[2026-01-10 11:39:03] -rw------- 1 boinc boinc    989398 Jan 10 10:34 agis_schedconf.cvmfs.json
[2026-01-10 11:39:03] -rw------- 1 boinc boinc   1516240 Jan 10 10:34 agis_ddmendpoints.agis.ALL.json
[2026-01-10 11:39:03] drwx------ 5 boinc boinc      4096 Jan 10 10:34 pilot3
[2026-01-10 11:39:03] -rw------- 1 boinc boinc 215254078 Jan 10 11:37 HITS.47898826._029197.pool.root.1
[2026-01-10 11:39:03] -rw-r--r-- 1 boinc boinc       530 Jan 10 11:37 boinc_task_state.xml
[2026-01-10 11:39:03] -rw------- 1 boinc boinc      1027 Jan 10 11:38 memory_monitor_summary.json
[2026-01-10 11:39:03] -rw------- 1 boinc boinc    388215 Jan 10 11:38 log.47898826._029197.job.log.tgz.1
[2026-01-10 11:39:03] -rw------- 1 boinc boinc      7734 Jan 10 11:38 heartbeat.json
[2026-01-10 11:39:03] -rw------- 1 boinc boinc        95 Jan 10 11:38 pilot_heartbeat.json
[2026-01-10 11:39:03] -rw-r--r-- 1 boinc boinc      8192 Jan 10 11:38 boinc_mmap_file
[2026-01-10 11:39:03] -rw-r--r-- 1 boinc boinc        27 Jan 10 11:38 wrapper_checkpoint.txt
[2026-01-10 11:39:03] -rw------- 1 boinc boinc      4826 Jan 10 11:39 pilotlog.txt
[2026-01-10 11:39:03] -rw------- 1 boinc boinc    570419 Jan 10 11:39 log.47898826._029197.job.log.1
[2026-01-10 11:39:03] -rw------- 1 boinc boinc       357 Jan 10 11:39 output.list
[2026-01-10 11:39:03] -rw-r--r-- 1 boinc boinc       620 Jan 10 11:39 runtime_log
[2026-01-10 11:39:03] -rw------- 1 boinc boinc    983040 Jan 10 11:39 result.tar.gz
[2026-01-10 11:39:03] -rw-r--r-- 1 boinc boinc      8869 Jan 10 11:39 runtime_log.err
[2026-01-10 11:39:03] -rw------- 1 boinc boinc       638 Jan 10 11:39 1RRMDmCi7x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm83kKDmSxaDen.diag
[2026-01-10 11:39:03] -rw-r--r-- 1 boinc boinc     21785 Jan 10 11:39 stderr.txt
[2026-01-10 11:39:03] HITS file was successfully produced:
[2026-01-10 11:39:03] -rw------- 1 boinc boinc 215254078 Jan 10 11:37 shared/HITS.pool.root.1
[2026-01-10 11:39:03]  *** Contents of shared directory: ***
[2026-01-10 11:39:03] total 430704
[2026-01-10 11:39:03] -rw-r--r-- 2 boinc boinc    592397 Jan 10 10:34 input.tar.gz
[2026-01-10 11:39:03] -rw-r--r-- 2 boinc boinc 224187894 Jan 10 10:34 ATLAS.root_0
[2026-01-10 11:39:03] -rw-r--r-- 2 boinc boinc     15847 Jan 10 10:34 start_atlas.sh
[2026-01-10 11:39:03] -rw------- 1 boinc boinc 215254078 Jan 10 11:37 HITS.pool.root.1
[2026-01-10 11:39:03] -rw------- 1 boinc boinc    983040 Jan 10 11:39 result.tar.gz
11:39:04 (534103): run_atlas exited; CPU time 39828.415488
11:39:04 (534103): called boinc_finish(0)

</stderr_txt>
]]>

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