Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:06:23 (2394435): wrapper (7.7.26015): starting
13:06:23 (2394435): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 13:06:23] Arguments: --nthreads 9
[2026-01-09 13:06:23] Threads: 9
[2026-01-09 13:06:23] Checking for CVMFS
[2026-01-09 13:06:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 13:06:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 13:06:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 13:06:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 13:06:24] 2.13.3.0 11442 93747 424672 154951 3 581 17336865 32935937 13439 16776704 17 358163652 99.466 502009701 38950 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 13:06:24] CVMFS is ok
[2026-01-09 13:06:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 13:06:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 13:06:24] Further information can be found at the LHC@home message board.
[2026-01-09 13:06:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 13:06:24] Checking for apptainer binary...
[2026-01-09 13:06:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 13:06:24] Running /usr/bin/apptainer --version
[2026-01-09 13:06:24] apptainer version 1.4.5-2.el9
[2026-01-09 13:06:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 13:06:24] c7-11-16.aglt2.org
[2026-01-09 13:06:24] apptainer works
[2026-01-09 13:06:25] Set ATHENA_PROC_NUMBER=9
[2026-01-09 13:06:25] Set ATHENA_CORE_NUMBER=9
[2026-01-09 13:06:25] Starting ATLAS job with PandaID=6963167906
[2026-01-09 13:06:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 21:06:35]  *** The last 200 lines of the pilot log: ***
[2026-01-09 21:06:35] 2026-01-10 02:05:42,669 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 21:06:35] 2026-01-10 02:05:42,684 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3289.623375
[2026-01-09 21:06:35] 2026-01-10 02:05:42,721 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6963167906/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 21:06:35] 2026-01-10 02:05:42,722 | INFO     | extracted standard info from prmon json
[2026-01-09 21:06:35] 2026-01-10 02:05:42,722 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 21:06:35] 2026-01-10 02:05:42,722 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 21:06:35] 2026-01-10 02:05:42,722 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 21:06:35] 2026-01-10 02:05:42,722 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 21:06:35] 2026-01-10 02:05:42,729 | INFO     | fitting pss+swap vs Time
[2026-01-09 21:06:35] 2026-01-10 02:05:42,729 | INFO     | sum of square deviations: 32196082923.59362
[2026-01-09 21:06:35] 2026-01-10 02:05:42,734 | INFO     | sum of deviations: 111285864297.99771
[2026-01-09 21:06:35] 2026-01-10 02:05:42,734 | INFO     | mean x: 1767996346.125532
[2026-01-09 21:06:35] 2026-01-10 02:05:42,734 | INFO     | mean y: 2528903.5085106385
[2026-01-09 21:06:35] 2026-01-10 02:05:42,734 | INFO     | intersect: -6108556159.889034
[2026-01-09 21:06:35] 2026-01-10 02:05:42,734 | INFO     | chi2: 4.69683987587474
[2026-01-09 21:06:35] 2026-01-10 02:05:42,735 | INFO     | sum of square deviations: 31179547840.6366
[2026-01-09 21:06:35] 2026-01-10 02:05:42,739 | INFO     | sum of deviations: 199491937445.25385
[2026-01-09 21:06:35] 2026-01-10 02:05:42,739 | INFO     | mean x: 1767996193.627957
[2026-01-09 21:06:35] 2026-01-10 02:05:42,739 | INFO     | mean y: 2542077.088172043
[2026-01-09 21:06:35] 2026-01-10 02:05:42,740 | INFO     | intersect: -11309391882.48634
[2026-01-09 21:06:35] 2026-01-10 02:05:42,740 | INFO     | chi2: 2.607791191454835
[2026-01-09 21:06:35] 2026-01-10 02:05:42,740 | INFO     | current chi2=2.607791191454835 (change=44.47774971316944 %)
[2026-01-09 21:06:35] 2026-01-10 02:05:42,741 | INFO     | sum of square deviations: 30184583608.687004
[2026-01-09 21:06:35] 2026-01-10 02:05:42,745 | INFO     | sum of deviations: 196534942328.07822
[2026-01-09 21:06:35] 2026-01-10 02:05:42,745 | INFO     | mean x: 1767996041.126087
[2026-01-09 21:06:35] 2026-01-10 02:05:42,745 | INFO     | mean y: 2541623.843478261
[2026-01-09 21:06:35] 2026-01-10 02:05:42,745 | INFO     | intersect: -11509063256.43669
[2026-01-09 21:06:35] 2026-01-10 02:05:42,745 | INFO     | chi2: 2.6079164581004552
[2026-01-09 21:06:35] 2026-01-10 02:05:42,768 | INFO     | current chi2=2.6079164581004552 (change=-0.004803553521879928 %)
[2026-01-09 21:06:35] 2026-01-10 02:05:42,768 | INFO     | right removable region: 459
[2026-01-09 21:06:35] 2026-01-10 02:05:42,769 | INFO     | sum of square deviations: 31179425354.11617
[2026-01-09 21:06:35] 2026-01-10 02:05:42,801 | INFO     | sum of deviations: -6704171038.025864
[2026-01-09 21:06:35] 2026-01-10 02:05:42,801 | INFO     | mean x: 1767996498.6322582
[2026-01-09 21:06:35] 2026-01-10 02:05:42,802 | INFO     | mean y: 2546558.4150537634
[2026-01-09 21:06:35] 2026-01-10 02:05:42,802 | INFO     | intersect: 382699521.0448395
[2026-01-09 21:06:35] 2026-01-10 02:05:42,802 | INFO     | chi2: 2.1986930681500545
[2026-01-09 21:06:35] 2026-01-10 02:05:42,802 | INFO     | current chi2=2.1986930681500545 (change=53.18782146601134 %)
[2026-01-09 21:06:35] 2026-01-10 02:05:42,803 | INFO     | sum of square deviations: 30184424584.371746
[2026-01-09 21:06:35] 2026-01-10 02:05:42,835 | INFO     | sum of deviations: -25243521763.002155
[2026-01-09 21:06:35] 2026-01-10 02:05:42,835 | INFO     | mean x: 1767996651.1369565
[2026-01-09 21:06:35] 2026-01-10 02:05:42,835 | INFO     | mean y: 2549393.841304348
[2026-01-09 21:06:35] 2026-01-10 02:05:42,865 | INFO     | intersect: 1481141831.9757223
[2026-01-09 21:06:35] 2026-01-10 02:05:42,865 | INFO     | chi2: 2.143402248217991
[2026-01-09 21:06:35] 2026-01-10 02:05:42,865 | INFO     | current chi2=2.143402248217991 (change=2.51471297804128 %)
[2026-01-09 21:06:35] 2026-01-10 02:05:42,865 | INFO     | left removable region: 20
[2026-01-09 21:06:35] 2026-01-10 02:05:42,866 | INFO     | sum of square deviations: 26236438932.85193
[2026-01-09 21:06:35] 2026-01-10 02:05:42,926 | INFO     | sum of deviations: 47893937385.170815
[2026-01-09 21:06:35] 2026-01-10 02:05:42,927 | INFO     | mean x: 1767996620.642369
[2026-01-09 21:06:35] 2026-01-10 02:05:42,927 | INFO     | mean y: 2564957.797266515
[2026-01-09 21:06:35] 2026-01-10 02:05:42,927 | INFO     | intersect: -3224866922.83848
[2026-01-09 21:06:35] 2026-01-10 02:05:42,927 | INFO     | chi2: 0.006132132377593697
[2026-01-09 21:06:35] 2026-01-10 02:05:42,927 | INFO     | current memory leak: 1.83 B/s (using 439 data points, chi2=0.01)
[2026-01-09 21:06:35] 2026-01-10 02:05:42,928 | INFO     | could have reported an average CPU frequency of 3286 MHz (19 samples)
[2026-01-09 21:06:35] 2026-01-10 02:05:42,928 | INFO     | ..............................
[2026-01-09 21:06:35] 2026-01-10 02:05:42,928 | INFO     | . Timing measurements:
[2026-01-09 21:06:35] 2026-01-10 02:05:42,928 | INFO     | . get job = 0 s
[2026-01-09 21:06:35] 2026-01-10 02:05:42,929 | INFO     | . initial setup = 2 s
[2026-01-09 21:06:35] 2026-01-10 02:05:42,929 | INFO     | . payload setup = 13 s
[2026-01-09 21:06:35] 2026-01-10 02:05:42,929 | INFO     | . stage-in = 0 s
[2026-01-09 21:06:35] 2026-01-10 02:05:42,929 | INFO     | . payload execution = 28650 s
[2026-01-09 21:06:35] 2026-01-10 02:05:42,929 | INFO     | . stage-out = 8 s
[2026-01-09 21:06:35] 2026-01-10 02:05:42,929 | INFO     | . log creation = 1 s
[2026-01-09 21:06:35] 2026-01-10 02:05:42,929 | INFO     | ..............................
[2026-01-09 21:06:35] 2026-01-10 02:05:43,094 | INFO     | 
[2026-01-09 21:06:35] 2026-01-10 02:05:43,094 | INFO     | job summary report
[2026-01-09 21:06:35] 2026-01-10 02:05:43,094 | INFO     | --------------------------------------------------
[2026-01-09 21:06:35] 2026-01-10 02:05:43,094 | INFO     | PanDA job id: 6963167906
[2026-01-09 21:06:35] 2026-01-10 02:05:43,094 | INFO     | task id: 47898826
[2026-01-09 21:06:35] 2026-01-10 02:05:43,094 | INFO     | errors: (none)
[2026-01-09 21:06:35] 2026-01-10 02:05:43,094 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 21:06:35] 2026-01-10 02:05:43,094 | INFO     | pilot state: finished 
[2026-01-09 21:06:35] 2026-01-10 02:05:43,094 | INFO     | transexitcode: 0
[2026-01-09 21:06:35] 2026-01-10 02:05:43,094 | INFO     | exeerrorcode: 0
[2026-01-09 21:06:35] 2026-01-10 02:05:43,094 | INFO     | exeerrordiag: 
[2026-01-09 21:06:35] 2026-01-10 02:05:43,095 | INFO     | exitcode: 0
[2026-01-09 21:06:35] 2026-01-10 02:05:43,095 | INFO     | exitmsg: OK
[2026-01-09 21:06:35] 2026-01-10 02:05:43,095 | INFO     | cpuconsumptiontime: 46010 s
[2026-01-09 21:06:35] 2026-01-10 02:05:43,095 | INFO     | nevents: 400
[2026-01-09 21:06:35] 2026-01-10 02:05:43,095 | INFO     | neventsw: 0
[2026-01-09 21:06:35] 2026-01-10 02:05:43,095 | INFO     | pid: 2405181
[2026-01-09 21:06:35] 2026-01-10 02:05:43,095 | INFO     | pgrp: 2405181
[2026-01-09 21:06:35] 2026-01-10 02:05:43,095 | INFO     | corecount: 9
[2026-01-09 21:06:35] 2026-01-10 02:05:43,095 | INFO     | event service: False
[2026-01-09 21:06:35] 2026-01-10 02:05:43,095 | INFO     | sizes: {0: 2283971, 6: 2284233, 11: 2284261, 28668: 2321448, 28669: 2321447, 28680: 2330501, 28684: 2330685, 28728: 2330879}
[2026-01-09 21:06:35] 2026-01-10 02:05:43,095 | INFO     | --------------------------------------------------
[2026-01-09 21:06:35] 2026-01-10 02:05:43,095 | INFO     | 
[2026-01-09 21:06:35] 2026-01-10 02:05:43,095 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-09 21:06:35] 2026-01-10 02:05:43,118 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 21:06:35] 2026-01-10 02:05:43,119 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 21:06:35] 2026-01-10 02:05:43,119 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 21:06:35] 2026-01-10 02:05:43,119 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 21:06:35] 2026-01-10 02:05:43,119 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 21:06:35] 2026-01-10 02:05:43,119 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 21:06:35] 2026-01-10 02:05:43,119 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 21:06:35] 2026-01-10 02:05:43,119 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 21:06:35] 2026-01-10 02:05:43,119 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 21:06:35] 2026-01-10 02:05:43,119 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 21:06:35] 2026-01-10 02:05:43,119 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 21:06:35] 2026-01-10 02:05:43,119 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 21:06:35] 2026-01-10 02:05:43,119 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 21:06:35] 2026-01-10 02:05:43,119 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 21:06:35] 2026-01-10 02:05:43,120 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 21:06:35] 2026-01-10 02:05:43,120 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 21:06:35] 2026-01-10 02:05:43,120 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 21:06:35] 2026-01-10 02:05:43,120 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 21:06:35] 2026-01-10 02:05:43,120 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 21:06:35] 2026-01-10 02:05:43,120 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 21:06:35] 2026-01-10 02:05:43,120 | INFO     | job 6963167906 has completed (purged errors)
[2026-01-09 21:06:35] 2026-01-10 02:05:43,120 | INFO     | overall cleanup function is called
[2026-01-09 21:06:35] 2026-01-10 02:05:44,132 | INFO     | --- collectZombieJob: --- 10, [2405181]
[2026-01-09 21:06:35] 2026-01-10 02:05:44,132 | INFO     | zombie collector waiting for pid 2405181
[2026-01-09 21:06:35] 2026-01-10 02:05:44,132 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 21:06:35] 2026-01-10 02:05:44,132 | INFO     | collected zombie processes
[2026-01-09 21:06:35] 2026-01-10 02:05:44,132 | INFO     | will attempt to kill all subprocesses of pid=2405181
[2026-01-09 21:06:35] 2026-01-10 02:05:46,489 | INFO     | PID=2398728 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 21:06:35] 2026-01-10 02:05:46,506 | INFO     | .. there are 11 such processes running
[2026-01-09 21:06:35] 2026-01-10 02:05:46,989 | INFO     | process IDs to be killed: [2405181] (in reverse order)
[2026-01-09 21:06:35] 2026-01-10 02:05:47,921 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 21:06:35] 2026-01-10 02:05:47,955 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 21:06:35] 2026-01-10 02:05:48,022 | INFO     | did not find any defunct processes belonging to 2405181
[2026-01-09 21:06:35] 2026-01-10 02:05:48,107 | INFO     | did not find any defunct processes belonging to 2405181
[2026-01-09 21:06:35] 2026-01-10 02:05:48,143 | INFO     | ready for new job
[2026-01-09 21:06:35] 2026-01-10 02:05:48,143 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 21:06:35] 2026-01-10 02:05:48,146 | INFO     | ***************************************
[2026-01-09 21:06:35] 2026-01-10 02:05:48,172 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 21:06:35] 2026-01-10 02:05:48,172 | INFO     | ***************************************
[2026-01-09 21:06:35] 2026-01-10 02:05:48,172 | INFO     | 
[2026-01-09 21:06:35] 2026-01-10 02:05:48,244 | INFO     | architecture information:
[2026-01-09 21:06:35] 2026-01-10 02:05:48,326 | INFO     | executing command: cat /etc/os-release
[2026-01-09 21:06:35] 2026-01-10 02:05:48,541 | INFO     | cat /etc/os-release:
[2026-01-09 21:06:35] NAME="CentOS Linux"
[2026-01-09 21:06:35] VERSION="7 (Core)"
[2026-01-09 21:06:35] ID="centos"
[2026-01-09 21:06:35] ID_LIKE="rhel fedora"
[2026-01-09 21:06:35] VERSION_ID="7"
[2026-01-09 21:06:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 21:06:35] ANSI_COLOR="0;31"
[2026-01-09 21:06:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 21:06:35] HOME_URL="https://www.centos.org/"
[2026-01-09 21:06:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 21:06:35] 
[2026-01-09 21:06:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 21:06:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 21:06:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 21:06:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 21:06:35] 
[2026-01-09 21:06:35] 2026-01-10 02:05:48,541 | INFO     | ***************************************
[2026-01-09 21:06:35] 2026-01-10 02:05:49,063 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-09 21:06:35] 2026-01-10 02:05:49,271 | INFO     | sufficient remaining disk space (95125766144 B)
[2026-01-09 21:06:35] 2026-01-10 02:05:49,271 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 21:06:35] 2026-01-10 02:05:49,271 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 21:06:35] 2026-01-10 02:05:49,271 | INFO     | update_server=False
[2026-01-09 21:06:35] 2026-01-10 02:05:49,272 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 21:06:35] 2026-01-10 02:05:49,275 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 21:06:35] 2026-01-10 02:05:49,359 | INFO     | all payload control threads have been joined
[2026-01-09 21:06:35] 2026-01-10 02:05:49,546 | INFO     | all data control threads have been joined
[2026-01-09 21:06:35] 2026-01-10 02:05:49,951 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:06:35] 2026-01-10 02:05:49,951 | INFO     | aborting loop
[2026-01-09 21:06:35] 2026-01-10 02:05:49,998 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 21:06:35] 2026-01-10 02:05:50,299 | INFO     | [job] retrieve thread has finished
[2026-01-09 21:06:35] 2026-01-10 02:05:50,365 | INFO     | [payload] control thread has finished
[2026-01-09 21:06:35] 2026-01-10 02:05:50,520 | INFO     | all job control threads have been joined
[2026-01-09 21:06:35] 2026-01-10 02:05:50,541 | INFO     | [payload] validate_post thread has finished
[2026-01-09 21:06:35] 2026-01-10 02:05:50,555 | INFO     | [data] control thread has finished
[2026-01-09 21:06:35] 2026-01-10 02:05:50,692 | INFO     | [payload] failed_post thread has finished
[2026-01-09 21:06:35] 2026-01-10 02:05:50,723 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 21:06:35] 2026-01-10 02:05:50,922 | INFO     | [data] copytool_in thread has finished
[2026-01-09 21:06:35] 2026-01-10 02:05:50,957 | INFO     | [job] job monitor thread has finished
[2026-01-09 21:06:35] 2026-01-10 02:05:51,184 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 21:06:35] 2026-01-10 02:05:51,190 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 21:06:35] 2026-01-10 02:05:51,283 | INFO     | [data] copytool_out thread has finished
[2026-01-09 21:06:35] 2026-01-10 02:05:51,519 | INFO     | [job] validate thread has finished
[2026-01-09 21:06:35] 2026-01-10 02:05:51,537 | INFO     | [job] control thread has finished
[2026-01-09 21:06:35] 2026-01-10 02:05:51,723 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 21:06:35] 2026-01-10 02:05:52,201 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:06:35] 2026-01-10 02:05:53,207 | INFO     | [job] queue monitor thread has finished
[2026-01-09 21:06:35] 2026-01-10 02:05:54,007 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 21:06:35] 2026-01-10 02:06:20,978 | INFO     | PID=2398728 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 21:06:35] 2026-01-10 02:06:20,978 | INFO     | .. there are 11 such processes running
[2026-01-09 21:06:35] 2026-01-10 02:06:20,978 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 21:06:35] 2026-01-10 02:06:20,978 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 21:06:35] 2026-01-10 02:06:20,978 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 21:06:35] 2026-01-10 02:06:28,049 | INFO     | [monitor] cgroup control has ended
[2026-01-09 21:06:35] 2026-01-10 02:06:28,695 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140181924067136)>', '<ExcThread(monitor, started 140181147477760)>']
[2026-01-09 21:06:35] 2026-01-10 02:06:29,025 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 21:06:35] 2026-01-10 02:06:29,025 | INFO     | [monitor] control thread has ended
[2026-01-09 21:06:35] 2026-01-10 02:06:33,721 | INFO     | all workflow threads have been joined
[2026-01-09 21:06:35] 2026-01-10 02:06:33,721 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 21:06:35] 2026-01-10 02:06:33,721 | INFO     | traces error code: 0
[2026-01-09 21:06:35] 2026-01-10 02:06:33,721 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 21:06:35] 2026-01-10 02:06:34,774 [wrapper] ==== pilot stdout END ====
[2026-01-09 21:06:35] 2026-01-10 02:06:34,848 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 21:06:35] 2026-01-10 02:06:34,890 [wrapper] pilotpid: 2398728
[2026-01-09 21:06:35] 2026-01-10 02:06:34,948 [wrapper] Pilot exit status: 0
[2026-01-09 21:06:35] 2026-01-10 02:06:35,163 [wrapper] pandaids: 6963167906
[2026-01-09 21:06:35] 2026-01-10 02:06:35,666 [wrapper] cleanup supervisor_pilot 3389275 2398729
[2026-01-09 21:06:35] 2026-01-10 02:06:35,669 [wrapper] Test setup, not cleaning
[2026-01-09 21:06:35] 2026-01-10 02:06:35,671 [wrapper] apfmon messages muted
[2026-01-09 21:06:35] 2026-01-10 02:06:35,673 [wrapper] ==== wrapper stdout END ====
[2026-01-09 21:06:35] 2026-01-10 02:06:35,675 [wrapper] ==== wrapper stderr END ====
[2026-01-09 21:06:35]  *** Error codes and diagnostics ***
[2026-01-09 21:06:35]     "exeErrorCode": 0,
[2026-01-09 21:06:35]     "exeErrorDiag": "",
[2026-01-09 21:06:35]     "pilotErrorCode": 0,
[2026-01-09 21:06:35]     "pilotErrorDiag": "",
[2026-01-09 21:06:35]  *** Listing of results directory ***
[2026-01-09 21:06:35] total 451176
[2026-01-09 21:06:35] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-09 21:06:35] -rwx------. 1 boincer umatlas     36322 Jan  8 19:59 runpilot2-wrapper.sh
[2026-01-09 21:06:35] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 20:03 queuedata.json
[2026-01-09 21:06:35] -rw-r--r--. 1 boincer umatlas       100 Jan  9 13:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 21:06:35] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 13:06 run_atlas
[2026-01-09 21:06:35] -rw-r--r--. 1 boincer umatlas       105 Jan  9 13:06 job.xml
[2026-01-09 21:06:35] -rw-r--r--. 2 boincer umatlas 225248561 Jan  9 13:06 EVNT.47898824._001343.pool.root.1
[2026-01-09 21:06:35] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 13:06 start_atlas.sh
[2026-01-09 21:06:35] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 13:06 shared
[2026-01-09 21:06:35] -rw-r--r--. 2 boincer umatlas    592397 Jan  9 13:06 input.tar.gz
[2026-01-09 21:06:35] -rw-r--r--. 1 boincer umatlas         0 Jan  9 13:06 boinc_lockfile
[2026-01-09 21:06:35] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 13:06 pandaJob.out
[2026-01-09 21:06:35] -rw-------. 1 boincer umatlas        57 Jan  9 13:06 setup.sh.local
[2026-01-09 21:06:35] -rw-------. 1 boincer umatlas    989356 Jan  9 13:06 agis_schedconf.cvmfs.json
[2026-01-09 21:06:35] drwx------. 5 boincer umatlas      4096 Jan  9 13:06 pilot3
[2026-01-09 21:06:35] -rw-------. 1 boincer umatlas 224183440 Jan  9 21:01 HITS.47898826._036108.pool.root.1
[2026-01-09 21:06:35] -rw-r--r--. 1 boincer umatlas       530 Jan  9 21:01 boinc_task_state.xml
[2026-01-09 21:06:35] -rw-r--r--. 1 boincer umatlas      6904 Jan  9 21:02 init_data.xml
[2026-01-09 21:06:35] -rw-------. 1 boincer umatlas      1027 Jan  9 21:04 memory_monitor_summary.json
[2026-01-09 21:06:35] -rw-------. 1 boincer umatlas   1516240 Jan  9 21:04 agis_ddmendpoints.agis.ALL.json
[2026-01-09 21:06:35] -rw-------. 1 boincer umatlas    656377 Jan  9 21:04 log.47898826._036108.job.log.tgz.1
[2026-01-09 21:06:35] -rw-------. 1 boincer umatlas        95 Jan  9 21:05 pilot_heartbeat.json
[2026-01-09 21:06:35] -rw-------. 1 boincer umatlas      7777 Jan  9 21:05 heartbeat.json
[2026-01-09 21:06:35] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 21:06 boinc_mmap_file
[2026-01-09 21:06:35] -rw-r--r--. 1 boincer umatlas        28 Jan  9 21:06 wrapper_checkpoint.txt
[2026-01-09 21:06:35] -rw-------. 1 boincer umatlas      4824 Jan  9 21:06 pilotlog.txt
[2026-01-09 21:06:35] -rw-------. 1 boincer umatlas   3670270 Jan  9 21:06 log.47898826._036108.job.log.1
[2026-01-09 21:06:35] -rw-------. 1 boincer umatlas       357 Jan  9 21:06 output.list
[2026-01-09 21:06:35] -rw-r--r--. 1 boincer umatlas       620 Jan  9 21:06 runtime_log
[2026-01-09 21:06:35] -rw-------. 1 boincer umatlas   4341760 Jan  9 21:06 result.tar.gz
[2026-01-09 21:06:35] -rw-r--r--. 1 boincer umatlas      9343 Jan  9 21:06 runtime_log.err
[2026-01-09 21:06:35] -rw-------. 1 boincer umatlas       658 Jan  9 21:06 GHtLDmZ1Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKngKDmNoVIom.diag
[2026-01-09 21:06:35] -rw-r--r--. 1 boincer umatlas     21258 Jan  9 21:06 stderr.txt
[2026-01-09 21:06:35] HITS file was successfully produced:
[2026-01-09 21:06:35] -rw-------. 1 boincer umatlas 224183440 Jan  9 21:01 shared/HITS.pool.root.1
[2026-01-09 21:06:35]  *** Contents of shared directory: ***
[2026-01-09 21:06:35] total 443748
[2026-01-09 21:06:35] -rw-r--r--. 2 boincer umatlas 225248561 Jan  9 13:06 ATLAS.root_0
[2026-01-09 21:06:35] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 13:06 start_atlas.sh
[2026-01-09 21:06:35] -rw-r--r--. 2 boincer umatlas    592397 Jan  9 13:06 input.tar.gz
[2026-01-09 21:06:35] -rw-------. 1 boincer umatlas 224183440 Jan  9 21:01 HITS.pool.root.1
[2026-01-09 21:06:35] -rw-------. 1 boincer umatlas   4341760 Jan  9 21:06 result.tar.gz
21:06:37 (2394435): run_atlas exited; CPU time 46481.272007
21:06:37 (2394435): called boinc_finish(0)

</stderr_txt>
]]>

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