Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:30:22 (808603): wrapper (7.7.26015): starting
12:30:22 (808603): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 12:30:22] Arguments: --nthreads 8
[2026-01-09 12:30:22] Threads: 8
[2026-01-09 12:30:22] Checking for CVMFS
[2026-01-09 12:30:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 12:30:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 12:30:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 12:30:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 12:30:23] 2.13.3.0 8759 21682 133756 154951 2 151 38962319 40960000 28029 16776704 0 102450938 99.655 88904596 48847 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 12:30:23] CVMFS is ok
[2026-01-09 12:30:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 12:30:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 12:30:23] Further information can be found at the LHC@home message board.
[2026-01-09 12:30:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 12:30:23] Checking for apptainer binary...
[2026-01-09 12:30:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 12:30:23] Running /usr/bin/apptainer --version
[2026-01-09 12:30:23] apptainer version 1.4.5-2.el9
[2026-01-09 12:30:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 12:30:23] c-208-39.aglt2.org
[2026-01-09 12:30:23] apptainer works
[2026-01-09 12:30:23] Set ATHENA_PROC_NUMBER=8
[2026-01-09 12:30:23] Set ATHENA_CORE_NUMBER=8
[2026-01-09 12:30:24] Starting ATLAS job with PandaID=6963187025
[2026-01-09 12:30:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 14:01:29]  *** The last 200 lines of the pilot log: ***
[2026-01-09 14:01:29] ]
[2026-01-09 14:01:29] 2026-01-09 18:59:41,486 | INFO     | transferring file log.47898826._036933.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6963187025/log.47898826._036933.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-09 14:01:29] 2026-01-09 18:59:41,487 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6963187025/log.47898826._036933.job.log.tgz.1 /tmp/boinchome/slots/3/log.47898826._036933.job
[2026-01-09 14:01:29] 2026-01-09 18:59:41,607 | INFO     | adding to output.list: log.47898826._036933.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a7/59/log.47898826._036933.job.log.tg
[2026-01-09 14:01:29] 2026-01-09 18:59:41,610 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-09 14:01:29] 2026-01-09 18:59:41,610 | INFO     | summary of transferred files:
[2026-01-09 14:01:29] 2026-01-09 18:59:41,610 | INFO     |  -- lfn=log.47898826._036933.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 14:01:29] 2026-01-09 18:59:41,610 | INFO     | stage-out finished correctly
[2026-01-09 14:01:29] 2026-01-09 18:59:41,767 | INFO     | time since job start (5336s) is within the limit (349056.0s)
[2026-01-09 14:01:29] 2026-01-09 18:59:41,847 | INFO     | number of running child processes to parent process 829393: 1
[2026-01-09 14:01:29] 2026-01-09 18:59:41,847 | INFO     | maximum number of monitored processes: 6
[2026-01-09 14:01:29] 2026-01-09 18:59:43,249 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 14:01:29] 2026-01-09 18:59:43,774 | INFO     | time since job start (5338s) is within the limit (349056.0s)
[2026-01-09 14:01:29] 2026-01-09 18:59:44,350 | INFO     | monitor loop #374: job 0:6963187025 is in state 'finished'
[2026-01-09 14:01:29] 2026-01-09 18:59:44,350 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 14:01:29] 2026-01-09 18:59:45,781 | INFO     | time since job start (5340s) is within the limit (349056.0s)
[2026-01-09 14:01:29] 2026-01-09 18:59:46,204 | INFO     | job 6963187025 has state=finished
[2026-01-09 14:01:29] 2026-01-09 18:59:46,204 | INFO     | preparing for final server update for job 6963187025 in state='finished'
[2026-01-09 14:01:29] 2026-01-09 18:59:46,205 | INFO     | this job has now completed (state=finished)
[2026-01-09 14:01:29] 2026-01-09 18:59:46,205 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 14:01:29] 2026-01-09 18:59:46,205 | INFO     | log transfer has been attempted: DONE
[2026-01-09 14:01:29] 2026-01-09 18:59:46,205 | INFO     | job 6963187025 has finished - writing final server update
[2026-01-09 14:01:29] 2026-01-09 18:59:46,205 | INFO     | total number of processed events: 400 (read)
[2026-01-09 14:01:29] 2026-01-09 18:59:46,205 | INFO     | executing command: lscpu
[2026-01-09 14:01:29] 2026-01-09 18:59:46,298 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 14:01:29] 2026-01-09 18:59:46,876 | INFO     | monitor loop #375: job 0:6963187025 is in state 'finished'
[2026-01-09 14:01:29] 2026-01-09 18:59:46,877 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 14:01:29] 2026-01-09 18:59:47,788 | INFO     | time since job start (5342s) is within the limit (349056.0s)
[2026-01-09 14:01:29] 2026-01-09 18:59:49,380 | INFO     | monitor loop #376: job 0:6963187025 is in state 'finished'
[2026-01-09 14:01:29] 2026-01-09 18:59:49,380 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 14:01:29] 2026-01-09 18:59:49,795 | INFO     | time since job start (5344s) is within the limit (349056.0s)
[2026-01-09 14:01:29] 2026-01-09 18:59:51,379 | INFO     | PID=812973 has CPU usage=9.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 14:01:29] 2026-01-09 18:59:51,379 | INFO     | .. there are 26 such processes running
[2026-01-09 14:01:29] 2026-01-09 18:59:51,883 | INFO     | monitor loop #377: job 0:6963187025 is in state 'finished'
[2026-01-09 14:01:29] 2026-01-09 18:59:51,883 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 14:01:29] 2026-01-09 18:59:52,380 | INFO     | time since job start (5347s) is within the limit (349056.0s)
[2026-01-09 14:01:29] 2026-01-09 18:59:52,839 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 14:01:29] 2026-01-09 18:59:52,843 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3769.2230468749985
[2026-01-09 14:01:29] 2026-01-09 18:59:52,856 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6963187025/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 14:01:29] 2026-01-09 18:59:52,856 | INFO     | extracted standard info from prmon json
[2026-01-09 14:01:29] 2026-01-09 18:59:52,857 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 14:01:29] 2026-01-09 18:59:52,857 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 14:01:29] 2026-01-09 18:59:52,857 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 14:01:29] 2026-01-09 18:59:52,857 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 14:01:29] 2026-01-09 18:59:52,858 | INFO     | fitting pss+swap vs Time
[2026-01-09 14:01:29] 2026-01-09 18:59:52,858 | INFO     | sum of square deviations: 158737860.0
[2026-01-09 14:01:29] 2026-01-09 18:59:52,858 | INFO     | sum of deviations: 7111196207.0
[2026-01-09 14:01:29] 2026-01-09 18:59:52,858 | INFO     | mean x: 1767982624.5
[2026-01-09 14:01:29] 2026-01-09 18:59:52,858 | INFO     | mean y: 2497777.375
[2026-01-09 14:01:29] 2026-01-09 18:59:52,858 | INFO     | intersect: -79200228865.06749
[2026-01-09 14:01:29] 2026-01-09 18:59:52,858 | INFO     | chi2: 0.5716506430406676
[2026-01-09 14:01:29] 2026-01-09 18:59:52,858 | INFO     | current memory leak: 44.80 B/s (using 80 data points, chi2=0.57)
[2026-01-09 14:01:29] 2026-01-09 18:59:52,859 | INFO     | could have reported an average CPU frequency of 3761 MHz (6 samples)
[2026-01-09 14:01:29] 2026-01-09 18:59:52,859 | INFO     | ..............................
[2026-01-09 14:01:29] 2026-01-09 18:59:52,859 | INFO     | . Timing measurements:
[2026-01-09 14:01:29] 2026-01-09 18:59:52,859 | INFO     | . get job = 0 s
[2026-01-09 14:01:29] 2026-01-09 18:59:52,859 | INFO     | . initial setup = 2 s
[2026-01-09 14:01:29] 2026-01-09 18:59:52,859 | INFO     | . payload setup = 19 s
[2026-01-09 14:01:29] 2026-01-09 18:59:52,859 | INFO     | . stage-in = 0 s
[2026-01-09 14:01:29] 2026-01-09 18:59:52,859 | INFO     | . payload execution = 5279 s
[2026-01-09 14:01:29] 2026-01-09 18:59:52,859 | INFO     | . stage-out = 1 s
[2026-01-09 14:01:29] 2026-01-09 18:59:52,859 | INFO     | . log creation = 0 s
[2026-01-09 14:01:29] 2026-01-09 18:59:52,859 | INFO     | ..............................
[2026-01-09 14:01:29] 2026-01-09 18:59:52,909 | INFO     | 
[2026-01-09 14:01:29] 2026-01-09 18:59:52,909 | INFO     | job summary report
[2026-01-09 14:01:29] 2026-01-09 18:59:52,909 | INFO     | --------------------------------------------------
[2026-01-09 14:01:29] 2026-01-09 18:59:52,909 | INFO     | PanDA job id: 6963187025
[2026-01-09 14:01:29] 2026-01-09 18:59:52,909 | INFO     | task id: 47898826
[2026-01-09 14:01:29] 2026-01-09 18:59:52,909 | INFO     | errors: (none)
[2026-01-09 14:01:29] 2026-01-09 18:59:52,909 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 14:01:29] 2026-01-09 18:59:52,909 | INFO     | pilot state: finished 
[2026-01-09 14:01:29] 2026-01-09 18:59:52,910 | INFO     | transexitcode: 0
[2026-01-09 14:01:29] 2026-01-09 18:59:52,910 | INFO     | exeerrorcode: 0
[2026-01-09 14:01:29] 2026-01-09 18:59:52,910 | INFO     | exeerrordiag: 
[2026-01-09 14:01:29] 2026-01-09 18:59:52,910 | INFO     | exitcode: 0
[2026-01-09 14:01:29] 2026-01-09 18:59:52,910 | INFO     | exitmsg: OK
[2026-01-09 14:01:29] 2026-01-09 18:59:52,910 | INFO     | cpuconsumptiontime: 30765 s
[2026-01-09 14:01:29] 2026-01-09 18:59:52,910 | INFO     | nevents: 400
[2026-01-09 14:01:29] 2026-01-09 18:59:52,910 | INFO     | neventsw: 0
[2026-01-09 14:01:29] 2026-01-09 18:59:52,910 | INFO     | pid: 829393
[2026-01-09 14:01:29] 2026-01-09 18:59:52,910 | INFO     | pgrp: 829393
[2026-01-09 14:01:29] 2026-01-09 18:59:52,910 | INFO     | corecount: 8
[2026-01-09 14:01:29] 2026-01-09 18:59:52,910 | INFO     | event service: False
[2026-01-09 14:01:29] 2026-01-09 18:59:52,910 | INFO     | sizes: {0: 2283970, 11: 2283970, 12: 2284260, 21: 2284288, 5302: 2310901, 5303: 2319899, 5305: 2320083, 5314: 2320277}
[2026-01-09 14:01:29] 2026-01-09 18:59:52,910 | INFO     | --------------------------------------------------
[2026-01-09 14:01:29] 2026-01-09 18:59:52,910 | INFO     | 
[2026-01-09 14:01:29] 2026-01-09 18:59:52,910 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-09 14:01:29] 2026-01-09 18:59:52,944 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 14:01:29] 2026-01-09 18:59:52,945 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 14:01:29] 2026-01-09 18:59:52,945 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 14:01:29] 2026-01-09 18:59:52,945 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 14:01:29] 2026-01-09 18:59:52,945 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 14:01:29] 2026-01-09 18:59:52,945 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 14:01:29] 2026-01-09 18:59:52,945 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 14:01:29] 2026-01-09 18:59:52,945 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 14:01:29] 2026-01-09 18:59:52,945 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 14:01:29] 2026-01-09 18:59:52,945 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 14:01:29] 2026-01-09 18:59:52,945 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 14:01:29] 2026-01-09 18:59:52,945 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 14:01:29] 2026-01-09 18:59:52,945 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 14:01:29] 2026-01-09 18:59:52,945 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 14:01:29] 2026-01-09 18:59:52,945 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 14:01:29] 2026-01-09 18:59:52,945 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 14:01:29] 2026-01-09 18:59:52,945 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 14:01:29] 2026-01-09 18:59:52,945 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 14:01:29] 2026-01-09 18:59:52,945 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 14:01:29] 2026-01-09 18:59:52,945 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 14:01:29] 2026-01-09 18:59:52,946 | INFO     | job 6963187025 has completed (purged errors)
[2026-01-09 14:01:29] 2026-01-09 18:59:52,946 | INFO     | overall cleanup function is called
[2026-01-09 14:01:29] 2026-01-09 18:59:53,954 | INFO     | --- collectZombieJob: --- 10, [829393]
[2026-01-09 14:01:29] 2026-01-09 18:59:53,954 | INFO     | zombie collector waiting for pid 829393
[2026-01-09 14:01:29] 2026-01-09 18:59:53,954 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 14:01:29] 2026-01-09 18:59:53,954 | INFO     | collected zombie processes
[2026-01-09 14:01:29] 2026-01-09 18:59:53,954 | INFO     | will attempt to kill all subprocesses of pid=829393
[2026-01-09 14:01:29] 2026-01-09 18:59:54,359 | INFO     | process IDs to be killed: [829393] (in reverse order)
[2026-01-09 14:01:29] 2026-01-09 18:59:54,517 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 14:01:29] 2026-01-09 18:59:54,517 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 14:01:29] 2026-01-09 18:59:54,541 | INFO     | did not find any defunct processes belonging to 829393
[2026-01-09 14:01:29] 2026-01-09 18:59:54,561 | INFO     | did not find any defunct processes belonging to 829393
[2026-01-09 14:01:29] 2026-01-09 18:59:54,561 | INFO     | ready for new job
[2026-01-09 14:01:29] 2026-01-09 18:59:54,561 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 14:01:29] 2026-01-09 18:59:54,562 | INFO     | ***************************************
[2026-01-09 14:01:29] 2026-01-09 18:59:54,562 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 14:01:29] 2026-01-09 18:59:54,562 | INFO     | ***************************************
[2026-01-09 14:01:29] 2026-01-09 18:59:54,562 | INFO     | 
[2026-01-09 14:01:29] 2026-01-09 18:59:54,566 | INFO     | architecture information:
[2026-01-09 14:01:29] 2026-01-09 18:59:54,566 | INFO     | executing command: cat /etc/os-release
[2026-01-09 14:01:29] 2026-01-09 18:59:54,587 | INFO     | cat /etc/os-release:
[2026-01-09 14:01:29] NAME="CentOS Linux"
[2026-01-09 14:01:29] VERSION="7 (Core)"
[2026-01-09 14:01:29] ID="centos"
[2026-01-09 14:01:29] ID_LIKE="rhel fedora"
[2026-01-09 14:01:29] VERSION_ID="7"
[2026-01-09 14:01:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 14:01:29] ANSI_COLOR="0;31"
[2026-01-09 14:01:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 14:01:29] HOME_URL="https://www.centos.org/"
[2026-01-09 14:01:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 14:01:29] 
[2026-01-09 14:01:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 14:01:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 14:01:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 14:01:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 14:01:29] 
[2026-01-09 14:01:29] 2026-01-09 18:59:54,587 | INFO     | ***************************************
[2026-01-09 14:01:29] 2026-01-09 18:59:55,089 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-09 14:01:29] 2026-01-09 18:59:55,104 | INFO     | sufficient remaining disk space (169390112768 B)
[2026-01-09 14:01:29] 2026-01-09 18:59:55,105 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 14:01:29] 2026-01-09 18:59:55,105 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 14:01:29] 2026-01-09 18:59:55,105 | INFO     | update_server=False
[2026-01-09 14:01:29] 2026-01-09 18:59:55,105 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 14:01:29] 2026-01-09 18:59:55,105 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 14:01:29] 2026-01-09 18:59:55,270 | INFO     | all data control threads have been joined
[2026-01-09 14:01:29] 2026-01-09 18:59:55,365 | INFO     | all job control threads have been joined
[2026-01-09 14:01:29] 2026-01-09 18:59:55,407 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:01:29] 2026-01-09 18:59:55,407 | INFO     | aborting loop
[2026-01-09 14:01:29] 2026-01-09 18:59:55,596 | INFO     | all payload control threads have been joined
[2026-01-09 14:01:29] 2026-01-09 18:59:56,111 | INFO     | [job] retrieve thread has finished
[2026-01-09 14:01:29] 2026-01-09 18:59:56,246 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 14:01:29] 2026-01-09 18:59:56,276 | INFO     | [data] control thread has finished
[2026-01-09 14:01:29] 2026-01-09 18:59:56,370 | INFO     | [job] control thread has finished
[2026-01-09 14:01:29] 2026-01-09 18:59:56,376 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 14:01:29] 2026-01-09 18:59:56,413 | INFO     | [job] job monitor thread has finished
[2026-01-09 14:01:29] 2026-01-09 18:59:56,602 | INFO     | [payload] control thread has finished
[2026-01-09 14:01:29] 2026-01-09 18:59:56,674 | INFO     | [data] copytool_in thread has finished
[2026-01-09 14:01:29] 2026-01-09 18:59:56,699 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 14:01:29] 2026-01-09 18:59:56,752 | INFO     | [job] validate thread has finished
[2026-01-09 14:01:29] 2026-01-09 18:59:57,112 | INFO     | [data] copytool_out thread has finished
[2026-01-09 14:01:29] 2026-01-09 18:59:57,380 | INFO     | [payload] failed_post thread has finished
[2026-01-09 14:01:29] 2026-01-09 18:59:57,668 | INFO     | [payload] validate_post thread has finished
[2026-01-09 14:01:29] 2026-01-09 18:59:57,922 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:01:29] 2026-01-09 18:59:58,327 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 14:01:29] 2026-01-09 18:59:58,927 | INFO     | [job] queue monitor thread has finished
[2026-01-09 14:01:29] 2026-01-09 19:00:02,334 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 14:01:29] 2026-01-09 19:00:05,473 | INFO     | job.realtimelogging is not enabled
[2026-01-09 14:01:29] 2026-01-09 19:00:06,479 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 14:01:29] 2026-01-09 19:00:26,018 | INFO     | PID=812973 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 14:01:29] 2026-01-09 19:00:26,018 | INFO     | .. there are 26 such processes running
[2026-01-09 14:01:29] 2026-01-09 19:00:26,027 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 14:01:29] 2026-01-09 19:00:26,027 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 14:01:29] 2026-01-09 19:00:26,027 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 14:01:29] 2026-01-09 19:00:42,906 [wrapper] supervise_pilot (15 min periods counter: 7)
[2026-01-09 14:01:29] 2026-01-09 19:00:53,765 | INFO     | [monitor] cgroup control has ended
[2026-01-09 14:01:29] 2026-01-09 19:00:54,104 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140613569587008)>', '<ExcThread(monitor, started 140613093664512)>']
[2026-01-09 14:01:29] 2026-01-09 19:00:54,225 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 14:01:29] 2026-01-09 19:00:54,225 | INFO     | [monitor] control thread has ended
[2026-01-09 14:01:29] 2026-01-09 19:00:59,130 | INFO     | all workflow threads have been joined
[2026-01-09 14:01:29] 2026-01-09 19:00:59,130 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 14:01:29] 2026-01-09 19:00:59,130 | INFO     | traces error code: 0
[2026-01-09 14:01:29] 2026-01-09 19:00:59,130 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 14:01:29] 2026-01-09 19:00:59,220 [wrapper] ==== pilot stdout END ====
[2026-01-09 14:01:29] 2026-01-09 19:00:59,222 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 14:01:29] 2026-01-09 19:00:59,224 [wrapper] pilotpid: 812973
[2026-01-09 14:01:29] 2026-01-09 19:00:59,225 [wrapper] Pilot exit status: 0
[2026-01-09 14:01:29] 2026-01-09 19:00:59,274 [wrapper] pandaids: 6963187025
[2026-01-09 14:01:29] 2026-01-09 19:00:59,396 [wrapper] cleanup supervisor_pilot 1370499 812974
[2026-01-09 14:01:29] 2026-01-09 19:00:59,401 [wrapper] Test setup, not cleaning
[2026-01-09 14:01:29] 2026-01-09 19:00:59,404 [wrapper] apfmon messages muted
[2026-01-09 14:01:29] 2026-01-09 19:00:59,406 [wrapper] ==== wrapper stdout END ====
[2026-01-09 14:01:29] 2026-01-09 19:00:59,408 [wrapper] ==== wrapper stderr END ====
[2026-01-09 14:01:29]  *** Error codes and diagnostics ***
[2026-01-09 14:01:29]     "exeErrorCode": 0,
[2026-01-09 14:01:29]     "exeErrorDiag": "",
[2026-01-09 14:01:29]     "pilotErrorCode": 0,
[2026-01-09 14:01:29]     "pilotErrorDiag": "",
[2026-01-09 14:01:29]  *** Listing of results directory ***
[2026-01-09 14:01:29] total 437572
[2026-01-09 14:01:29] -rwx------. 1 boincer umatlas     36322 Jan  8 20:01 runpilot2-wrapper.sh
[2026-01-09 14:01:29] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-09 14:01:29] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 20:06 queuedata.json
[2026-01-09 14:01:29] -rw-r--r--. 1 boincer umatlas       100 Jan  9 12:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 14:01:29] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 12:30 run_atlas
[2026-01-09 14:01:29] -rw-r--r--. 1 boincer umatlas       105 Jan  9 12:30 job.xml
[2026-01-09 14:01:29] -rw-r--r--. 2 boincer umatlas 227176220 Jan  9 12:30 EVNT.47898824._001416.pool.root.1
[2026-01-09 14:01:29] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 12:30 start_atlas.sh
[2026-01-09 14:01:29] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 12:30 shared
[2026-01-09 14:01:29] -rw-r--r--. 2 boincer umatlas    592396 Jan  9 12:30 input.tar.gz
[2026-01-09 14:01:29] -rw-r--r--. 1 boincer umatlas         0 Jan  9 12:30 boinc_lockfile
[2026-01-09 14:01:29] -rw-r--r--. 1 boincer umatlas      2519 Jan  9 12:30 pandaJob.out
[2026-01-09 14:01:29] -rw-------. 1 boincer umatlas        57 Jan  9 12:30 setup.sh.local
[2026-01-09 14:01:29] -rw-------. 1 boincer umatlas    989356 Jan  9 12:30 agis_schedconf.cvmfs.json
[2026-01-09 14:01:29] -rw-------. 1 boincer umatlas   1516240 Jan  9 12:30 agis_ddmendpoints.agis.ALL.json
[2026-01-09 14:01:29] drwx------. 5 boincer umatlas      4096 Jan  9 12:30 pilot3
[2026-01-09 14:01:29] -rw-r--r--. 1 boincer umatlas      7183 Jan  9 13:58 init_data.xml
[2026-01-09 14:01:29] -rw-------. 1 boincer umatlas 214786043 Jan  9 13:59 HITS.47898826._036933.pool.root.1
[2026-01-09 14:01:29] -rw-r--r--. 1 boincer umatlas       530 Jan  9 13:59 boinc_task_state.xml
[2026-01-09 14:01:29] -rw-------. 1 boincer umatlas      1033 Jan  9 13:59 memory_monitor_summary.json
[2026-01-09 14:01:29] -rw-------. 1 boincer umatlas    331998 Jan  9 13:59 log.47898826._036933.job.log.tgz.1
[2026-01-09 14:01:29] -rw-------. 1 boincer umatlas      7782 Jan  9 13:59 heartbeat.json
[2026-01-09 14:01:29] -rw-------. 1 boincer umatlas        95 Jan  9 14:00 pilot_heartbeat.json
[2026-01-09 14:01:29] -rw-------. 1 boincer umatlas      4896 Jan  9 14:00 pilotlog.txt
[2026-01-09 14:01:29] -rw-------. 1 boincer umatlas    762872 Jan  9 14:00 log.47898826._036933.job.log.1
[2026-01-09 14:01:29] -rw-------. 1 boincer umatlas       357 Jan  9 14:00 output.list
[2026-01-09 14:01:29] -rw-r--r--. 1 boincer umatlas       620 Jan  9 14:00 runtime_log
[2026-01-09 14:01:29] -rw-------. 1 boincer umatlas   1116160 Jan  9 14:00 result.tar.gz
[2026-01-09 14:01:29] -rw-------. 1 boincer umatlas       652 Jan  9 14:00 ZuFLDmv3Fy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmv3lKDm2KGlzn.diag
[2026-01-09 14:01:29] -rw-r--r--. 1 boincer umatlas      9342 Jan  9 14:00 runtime_log.err
[2026-01-09 14:01:29] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 14:01 boinc_mmap_file
[2026-01-09 14:01:29] -rw-r--r--. 1 boincer umatlas        27 Jan  9 14:01 wrapper_checkpoint.txt
[2026-01-09 14:01:29] -rw-r--r--. 1 boincer umatlas     22424 Jan  9 14:01 stderr.txt
[2026-01-09 14:01:29] HITS file was successfully produced:
[2026-01-09 14:01:29] -rw-------. 1 boincer umatlas 214786043 Jan  9 13:59 shared/HITS.pool.root.1
[2026-01-09 14:01:29]  *** Contents of shared directory: ***
[2026-01-09 14:01:29] total 433300
[2026-01-09 14:01:29] -rw-r--r--. 2 boincer umatlas 227176220 Jan  9 12:30 ATLAS.root_0
[2026-01-09 14:01:29] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 12:30 start_atlas.sh
[2026-01-09 14:01:29] -rw-r--r--. 2 boincer umatlas    592396 Jan  9 12:30 input.tar.gz
[2026-01-09 14:01:29] -rw-------. 1 boincer umatlas 214786043 Jan  9 13:59 HITS.pool.root.1
[2026-01-09 14:01:29] -rw-------. 1 boincer umatlas   1116160 Jan  9 14:00 result.tar.gz
14:01:31 (808603): run_atlas exited; CPU time 30935.600041
14:01:31 (808603): called boinc_finish(0)

</stderr_txt>
]]>

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