Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:43:24 (2770646): wrapper (7.7.26015): starting
12:43:24 (2770646): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 12:43:24] Arguments: --nthreads 8
[2026-01-09 12:43:24] Threads: 8
[2026-01-09 12:43:24] Checking for CVMFS
[2026-01-09 12:43:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 12:43:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 12:43:25] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 12:43:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 12:43:26] 2.13.3.0 10749 50039 504088 154951 3 596 23954160 32935937 60350 16776704 0 525237293 99.784 283679004 29009 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 12:43:26] CVMFS is ok
[2026-01-09 12:43:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 12:43:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 12:43:26] Further information can be found at the LHC@home message board.
[2026-01-09 12:43:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 12:43:26] Checking for apptainer binary...
[2026-01-09 12:43:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 12:43:26] Running /usr/bin/apptainer --version
[2026-01-09 12:43:26] apptainer version 1.4.5-2.el9
[2026-01-09 12:43:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 12:43:27] lc-12-33.aglt2.org
[2026-01-09 12:43:27] apptainer works
[2026-01-09 12:43:27] Set ATHENA_PROC_NUMBER=8
[2026-01-09 12:43:27] Set ATHENA_CORE_NUMBER=8
[2026-01-09 12:43:27] Starting ATLAS job with PandaID=6963186977
[2026-01-09 12:43:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:20:05 (2770646): BOINC client no longer exists - exiting
15:20:05 (2770646): timer handler: client dead, exiting
15:28:46 (623417): wrapper (7.7.26015): starting
15:28:46 (623417): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 15:28:46] Arguments: --nthreads 8
[2026-01-09 15:28:46] Threads: 8
[2026-01-09 15:28:46] This job has been restarted, cleaning up previous attempt
[2026-01-09 15:28:46] Checking for CVMFS
[2026-01-09 15:28:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 15:28:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 15:28:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 15:28:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 15:28:48] 2.13.3.0 10749 50205 496736 154956 2 341 25759242 32935937 53884 16776704 0 527086495 99.784 284145527 29012 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 15:28:48] CVMFS is ok
[2026-01-09 15:28:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 15:28:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 15:28:48] Further information can be found at the LHC@home message board.
[2026-01-09 15:28:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 15:28:48] Checking for apptainer binary...
[2026-01-09 15:28:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 15:28:48] Running /usr/bin/apptainer --version
[2026-01-09 15:28:48] apptainer version 1.4.5-2.el9
[2026-01-09 15:28:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 15:28:49] lc-12-33.aglt2.org
[2026-01-09 15:28:49] apptainer works
[2026-01-09 15:28:49] Set ATHENA_PROC_NUMBER=8
[2026-01-09 15:28:49] Set ATHENA_CORE_NUMBER=8
[2026-01-09 15:28:49] Starting ATLAS job with PandaID=6963186977
[2026-01-09 15:28:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 23:39:45]  *** The last 200 lines of the pilot log: ***
[2026-01-09 23:39:45] 2026-01-10 04:38:42,300 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6963186977/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 23:39:45] 2026-01-10 04:38:42,301 | INFO     | extracted standard info from prmon json
[2026-01-09 23:39:45] 2026-01-10 04:38:42,301 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 23:39:45] 2026-01-10 04:38:42,301 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 23:39:45] 2026-01-10 04:38:42,301 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 23:39:45] 2026-01-10 04:38:42,301 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 23:39:45] 2026-01-10 04:38:42,345 | INFO     | fitting pss+swap vs Time
[2026-01-09 23:39:45] 2026-01-10 04:38:42,346 | INFO     | sum of square deviations: 34292569443.147934
[2026-01-09 23:39:45] 2026-01-10 04:38:42,400 | INFO     | sum of deviations: 99903639835.62497
[2026-01-09 23:39:45] 2026-01-10 04:38:42,404 | INFO     | mean x: 1768005261.5770833
[2026-01-09 23:39:45] 2026-01-10 04:38:42,404 | INFO     | mean y: 2498761.875
[2026-01-09 23:39:45] 2026-01-10 04:38:42,405 | INFO     | intersect: -5148184425.423456
[2026-01-09 23:39:45] 2026-01-10 04:38:42,405 | INFO     | chi2: 2.4793592146241363
[2026-01-09 23:39:45] 2026-01-10 04:38:42,406 | INFO     | sum of square deviations: 33232058518.11796
[2026-01-09 23:39:45] 2026-01-10 04:38:42,438 | INFO     | sum of deviations: 128533925174.78322
[2026-01-09 23:39:45] 2026-01-10 04:38:42,438 | INFO     | mean x: 1768005109.0778947
[2026-01-09 23:39:45] 2026-01-10 04:38:42,438 | INFO     | mean y: 2502842.303157895
[2026-01-09 23:39:45] 2026-01-10 04:38:42,439 | INFO     | intersect: -6835732480.223061
[2026-01-09 23:39:45] 2026-01-10 04:38:42,439 | INFO     | chi2: 1.798455211039292
[2026-01-09 23:39:45] 2026-01-10 04:38:42,439 | INFO     | current chi2=1.798455211039292 (change=27.462902493863417 %)
[2026-01-09 23:39:45] 2026-01-10 04:38:42,440 | INFO     | sum of square deviations: 32193641030.58707
[2026-01-09 23:39:45] 2026-01-10 04:38:42,545 | INFO     | sum of deviations: 126876815649.57863
[2026-01-09 23:39:45] 2026-01-10 04:38:42,546 | INFO     | mean x: 1768004956.5787234
[2026-01-09 23:39:45] 2026-01-10 04:38:42,546 | INFO     | mean y: 2502598.9978723405
[2026-01-09 23:39:45] 2026-01-10 04:38:42,546 | INFO     | intersect: -6965296996.277959
[2026-01-09 23:39:45] 2026-01-10 04:38:42,546 | INFO     | chi2: 1.7985093697218293
[2026-01-09 23:39:45] 2026-01-10 04:38:42,546 | INFO     | current chi2=1.7985093697218293 (change=-0.003011400128559975 %)
[2026-01-09 23:39:45] 2026-01-10 04:38:42,546 | INFO     | right removable region: 469
[2026-01-09 23:39:45] 2026-01-10 04:38:42,547 | INFO     | sum of square deviations: 33232035948.117954
[2026-01-09 23:39:45] 2026-01-10 04:38:42,592 | INFO     | sum of deviations: 11554696488.793724
[2026-01-09 23:39:45] 2026-01-10 04:38:42,656 | INFO     | mean x: 1768005414.0778947
[2026-01-09 23:39:45] 2026-01-10 04:38:42,656 | INFO     | mean y: 2511421.1136842105
[2026-01-09 23:39:45] 2026-01-10 04:38:42,657 | INFO     | intersect: -612219676.9781586
[2026-01-09 23:39:45] 2026-01-10 04:38:42,657 | INFO     | chi2: 0.8144322397384433
[2026-01-09 23:39:45] 2026-01-10 04:38:42,657 | INFO     | current chi2=0.8144322397384433 (change=67.15150289902995 %)
[2026-01-09 23:39:45] 2026-01-10 04:38:42,658 | INFO     | sum of square deviations: 32193653594.89365
[2026-01-09 23:39:45] 2026-01-10 04:38:42,706 | INFO     | sum of deviations: -9425994334.957447
[2026-01-09 23:39:45] 2026-01-10 04:38:42,707 | INFO     | mean x: 1768005566.5744681
[2026-01-09 23:39:45] 2026-01-10 04:38:42,707 | INFO     | mean y: 2514502.370212766
[2026-01-09 23:39:45] 2026-01-10 04:38:42,707 | INFO     | intersect: 520169648.4561326
[2026-01-09 23:39:45] 2026-01-10 04:38:42,761 | INFO     | chi2: 0.7499227641169349
[2026-01-09 23:39:45] 2026-01-10 04:38:42,761 | INFO     | current chi2=0.7499227641169349 (change=7.920791009234321 %)
[2026-01-09 23:39:45] 2026-01-10 04:38:42,761 | INFO     | left removable region: 20
[2026-01-09 23:39:45] 2026-01-10 04:38:42,761 | INFO     | sum of square deviations: 28068323358.574654
[2026-01-09 23:39:45] 2026-01-10 04:38:42,790 | INFO     | sum of deviations: 1945604954.238309
[2026-01-09 23:39:45] 2026-01-10 04:38:42,790 | INFO     | mean x: 1768005536.0734966
[2026-01-09 23:39:45] 2026-01-10 04:38:42,790 | INFO     | mean y: 2521458.204899777
[2026-01-09 23:39:45] 2026-01-10 04:38:42,790 | INFO     | intersect: -120030939.60529959
[2026-01-09 23:39:45] 2026-01-10 04:38:42,791 | INFO     | chi2: 0.009414126439929449
[2026-01-09 23:39:45] 2026-01-10 04:38:42,791 | INFO     | current memory leak: 0.07 B/s (using 449 data points, chi2=0.01)
[2026-01-09 23:39:45] 2026-01-10 04:38:42,810 | INFO     | could have reported an average CPU frequency of 2930 MHz (19 samples)
[2026-01-09 23:39:45] 2026-01-10 04:38:42,811 | INFO     | ..............................
[2026-01-09 23:39:45] 2026-01-10 04:38:42,811 | INFO     | . Timing measurements:
[2026-01-09 23:39:45] 2026-01-10 04:38:42,811 | INFO     | . get job = 0 s
[2026-01-09 23:39:45] 2026-01-10 04:38:42,811 | INFO     | . initial setup = 2 s
[2026-01-09 23:39:45] 2026-01-10 04:38:42,811 | INFO     | . payload setup = 20 s
[2026-01-09 23:39:45] 2026-01-10 04:38:42,811 | INFO     | . stage-in = 0 s
[2026-01-09 23:39:45] 2026-01-10 04:38:42,811 | INFO     | . payload execution = 29261 s
[2026-01-09 23:39:45] 2026-01-10 04:38:42,811 | INFO     | . stage-out = 4 s
[2026-01-09 23:39:45] 2026-01-10 04:38:42,811 | INFO     | . log creation = 0 s
[2026-01-09 23:39:45] 2026-01-10 04:38:42,811 | INFO     | ..............................
[2026-01-09 23:39:45] 2026-01-10 04:38:43,126 | INFO     | time since job start (29361s) is within the limit (349056.0s)
[2026-01-09 23:39:45] 2026-01-10 04:38:43,223 | INFO     | 
[2026-01-09 23:39:45] 2026-01-10 04:38:43,223 | INFO     | job summary report
[2026-01-09 23:39:45] 2026-01-10 04:38:43,223 | INFO     | --------------------------------------------------
[2026-01-09 23:39:45] 2026-01-10 04:38:43,223 | INFO     | PanDA job id: 6963186977
[2026-01-09 23:39:45] 2026-01-10 04:38:43,223 | INFO     | task id: 47898826
[2026-01-09 23:39:45] 2026-01-10 04:38:43,223 | INFO     | errors: (none)
[2026-01-09 23:39:45] 2026-01-10 04:38:43,223 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 23:39:45] 2026-01-10 04:38:43,223 | INFO     | pilot state: finished 
[2026-01-09 23:39:45] 2026-01-10 04:38:43,223 | INFO     | transexitcode: 0
[2026-01-09 23:39:45] 2026-01-10 04:38:43,223 | INFO     | exeerrorcode: 0
[2026-01-09 23:39:45] 2026-01-10 04:38:43,223 | INFO     | exeerrordiag: 
[2026-01-09 23:39:45] 2026-01-10 04:38:43,223 | INFO     | exitcode: 0
[2026-01-09 23:39:45] 2026-01-10 04:38:43,224 | INFO     | exitmsg: OK
[2026-01-09 23:39:45] 2026-01-10 04:38:43,224 | INFO     | cpuconsumptiontime: 59545 s
[2026-01-09 23:39:45] 2026-01-10 04:38:43,224 | INFO     | nevents: 400
[2026-01-09 23:39:45] 2026-01-10 04:38:43,224 | INFO     | neventsw: 0
[2026-01-09 23:39:45] 2026-01-10 04:38:43,224 | INFO     | pid: 705957
[2026-01-09 23:39:45] 2026-01-10 04:38:43,224 | INFO     | pgrp: 705957
[2026-01-09 23:39:45] 2026-01-10 04:38:43,224 | INFO     | corecount: 8
[2026-01-09 23:39:45] 2026-01-10 04:38:43,224 | INFO     | event service: False
[2026-01-09 23:39:45] 2026-01-10 04:38:43,224 | INFO     | sizes: {0: 2283799, 1: 2283998, 2: 2284026, 12: 2284026, 15: 2284316, 23: 2284344, 29287: 2321410, 29288: 2321409, 29294: 2330519, 29322: 2330657}
[2026-01-09 23:39:45] 2026-01-10 04:38:43,224 | INFO     | --------------------------------------------------
[2026-01-09 23:39:45] 2026-01-10 04:38:43,224 | INFO     | 
[2026-01-09 23:39:45] 2026-01-10 04:38:43,224 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-01-09 23:39:45] 2026-01-10 04:38:43,355 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 23:39:45] 2026-01-10 04:38:43,356 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 23:39:45] 2026-01-10 04:38:43,356 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 23:39:45] 2026-01-10 04:38:43,356 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 23:39:45] 2026-01-10 04:38:43,356 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 23:39:45] 2026-01-10 04:38:43,356 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 23:39:45] 2026-01-10 04:38:43,356 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 23:39:45] 2026-01-10 04:38:43,356 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 23:39:45] 2026-01-10 04:38:43,356 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 23:39:45] 2026-01-10 04:38:43,356 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 23:39:45] 2026-01-10 04:38:43,356 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 23:39:45] 2026-01-10 04:38:43,357 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 23:39:45] 2026-01-10 04:38:43,357 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 23:39:45] 2026-01-10 04:38:43,357 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 23:39:45] 2026-01-10 04:38:43,357 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 23:39:45] 2026-01-10 04:38:43,357 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 23:39:45] 2026-01-10 04:38:43,357 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 23:39:45] 2026-01-10 04:38:43,357 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 23:39:45] 2026-01-10 04:38:43,357 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 23:39:45] 2026-01-10 04:38:43,357 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 23:39:45] 2026-01-10 04:38:43,357 | INFO     | job 6963186977 has completed (purged errors)
[2026-01-09 23:39:45] 2026-01-10 04:38:43,357 | INFO     | overall cleanup function is called
[2026-01-09 23:39:45] 2026-01-10 04:38:44,371 | INFO     | --- collectZombieJob: --- 10, [705957]
[2026-01-09 23:39:45] 2026-01-10 04:38:44,371 | INFO     | zombie collector waiting for pid 705957
[2026-01-09 23:39:45] 2026-01-10 04:38:44,371 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 23:39:45] 2026-01-10 04:38:44,372 | INFO     | collected zombie processes
[2026-01-09 23:39:45] 2026-01-10 04:38:44,372 | INFO     | will attempt to kill all subprocesses of pid=705957
[2026-01-09 23:39:45] 2026-01-10 04:38:47,422 | INFO     | process IDs to be killed: [705957] (in reverse order)
[2026-01-09 23:39:45] 2026-01-10 04:38:47,511 | INFO     | PID=654503 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 23:39:45] 2026-01-10 04:38:47,511 | INFO     | .. there are 91 such processes running
[2026-01-09 23:39:45] 2026-01-10 04:38:47,671 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 23:39:45] 2026-01-10 04:38:47,674 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 23:39:45] 2026-01-10 04:38:47,730 | INFO     | did not find any defunct processes belonging to 705957
[2026-01-09 23:39:45] 2026-01-10 04:38:47,765 | INFO     | did not find any defunct processes belonging to 705957
[2026-01-09 23:39:45] 2026-01-10 04:38:47,765 | INFO     | ready for new job
[2026-01-09 23:39:45] 2026-01-10 04:38:47,766 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 23:39:45] 2026-01-10 04:38:47,769 | INFO     | ***************************************
[2026-01-09 23:39:45] 2026-01-10 04:38:47,769 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 23:39:45] 2026-01-10 04:38:47,769 | INFO     | ***************************************
[2026-01-09 23:39:45] 2026-01-10 04:38:47,769 | INFO     | 
[2026-01-09 23:39:45] 2026-01-10 04:38:47,776 | INFO     | architecture information:
[2026-01-09 23:39:45] 2026-01-10 04:38:47,776 | INFO     | executing command: cat /etc/os-release
[2026-01-09 23:39:45] 2026-01-10 04:38:47,797 | INFO     | cat /etc/os-release:
[2026-01-09 23:39:45] NAME="CentOS Linux"
[2026-01-09 23:39:45] VERSION="7 (Core)"
[2026-01-09 23:39:45] ID="centos"
[2026-01-09 23:39:45] ID_LIKE="rhel fedora"
[2026-01-09 23:39:45] VERSION_ID="7"
[2026-01-09 23:39:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 23:39:45] ANSI_COLOR="0;31"
[2026-01-09 23:39:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 23:39:45] HOME_URL="https://www.centos.org/"
[2026-01-09 23:39:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 23:39:45] 
[2026-01-09 23:39:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 23:39:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 23:39:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 23:39:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 23:39:45] 
[2026-01-09 23:39:45] 2026-01-10 04:38:47,797 | INFO     | ***************************************
[2026-01-09 23:39:45] 2026-01-10 04:38:48,300 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-01-09 23:39:45] 2026-01-10 04:38:48,423 | INFO     | sufficient remaining disk space (73651978240 B)
[2026-01-09 23:39:45] 2026-01-10 04:38:48,423 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 23:39:45] 2026-01-10 04:38:48,423 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 23:39:45] 2026-01-10 04:38:48,423 | INFO     | update_server=False
[2026-01-09 23:39:45] 2026-01-10 04:38:48,423 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 23:39:45] 2026-01-10 04:38:48,424 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-09 23:39:45] 2026-01-10 04:38:48,424 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 23:39:45] 2026-01-10 04:38:48,425 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 23:39:45] 2026-01-10 04:38:48,425 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 23:39:45] 2026-01-10 04:38:48,425 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:39:45] 2026-01-10 04:38:48,463 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 23:39:45] 2026-01-10 04:38:48,525 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 23:39:45] 2026-01-10 04:38:48,732 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 23:39:45] 2026-01-10 04:38:48,733 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 23:39:45] 2026-01-10 04:38:48,733 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:39:45] 2026-01-10 04:38:48,733 | INFO     | will abort loop
[2026-01-09 23:39:45] 2026-01-10 04:38:49,305 | INFO     | all data control threads have been joined
[2026-01-09 23:39:45] 2026-01-10 04:38:49,430 | INFO     | [job] queue monitor thread has finished
[2026-01-09 23:39:45] 2026-01-10 04:38:49,433 | INFO     | [job] retrieve thread has finished
[2026-01-09 23:39:45] 2026-01-10 04:38:49,461 | INFO     | [job] validate thread has finished
[2026-01-09 23:39:45] 2026-01-10 04:38:49,462 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 23:39:45] 2026-01-10 04:38:49,463 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 23:39:45] 2026-01-10 04:38:49,502 | INFO     | all job control threads have been joined
[2026-01-09 23:39:45] 2026-01-10 04:38:49,739 | INFO     | [job] job monitor thread has finished
[2026-01-09 23:39:45] 2026-01-10 04:38:49,763 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 23:39:45] 2026-01-10 04:38:49,928 | INFO     | all payload control threads have been joined
[2026-01-09 23:39:45] 2026-01-10 04:38:50,214 | INFO     | [data] copytool_in thread has finished
[2026-01-09 23:39:45] 2026-01-10 04:38:50,312 | INFO     | [data] control thread has finished
[2026-01-09 23:39:45] 2026-01-10 04:38:50,470 | INFO     | [data] copytool_out thread has finished
[2026-01-09 23:39:45] 2026-01-10 04:38:50,508 | INFO     | [job] control thread has finished
[2026-01-09 23:39:45] 2026-01-10 04:38:50,561 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 23:39:45] 2026-01-10 04:38:50,733 | INFO     | [payload] validate_post thread has finished
[2026-01-09 23:39:45] 2026-01-10 04:38:50,761 | INFO     | [payload] failed_post thread has finished
[2026-01-09 23:39:45] 2026-01-10 04:38:50,935 | INFO     | [payload] control thread has finished
[2026-01-09 23:39:45] 2026-01-10 04:38:52,550 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 23:39:45] 2026-01-10 04:39:16,605 | INFO     | [monitor] cgroup control has ended
[2026-01-09 23:39:45] 2026-01-10 04:39:18,117 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139683247384384)>', '<ExcThread(monitor, started 139682889307904)>']
[2026-01-09 23:39:45] 2026-01-10 04:39:18,654 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 23:39:45] 2026-01-10 04:39:18,654 | INFO     | [monitor] control thread has ended
[2026-01-09 23:39:45] 2026-01-10 04:39:23,143 | INFO     | all workflow threads have been joined
[2026-01-09 23:39:45] 2026-01-10 04:39:23,143 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 23:39:45] 2026-01-10 04:39:23,144 | INFO     | traces error code: 0
[2026-01-09 23:39:45] 2026-01-10 04:39:23,144 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 23:39:45] 2026-01-10 04:39:23,396 [wrapper] ==== pilot stdout END ====
[2026-01-09 23:39:45] 2026-01-10 04:39:23,400 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 23:39:45] 2026-01-10 04:39:23,461 [wrapper] pilotpid: 654503
[2026-01-09 23:39:45] 2026-01-10 04:39:23,490 [wrapper] Pilot exit status: 0
[2026-01-09 23:39:45] 2026-01-10 04:39:23,584 [wrapper] pandaids: 6963186977 6963186977
[2026-01-09 23:39:45] 2026-01-10 04:39:23,828 [wrapper] cleanup supervisor_pilot 2006076 654504
[2026-01-09 23:39:45] 2026-01-10 04:39:23,845 [wrapper] Test setup, not cleaning
[2026-01-09 23:39:45] 2026-01-10 04:39:23,868 [wrapper] apfmon messages muted
[2026-01-09 23:39:45] 2026-01-10 04:39:23,888 [wrapper] ==== wrapper stdout END ====
[2026-01-09 23:39:45] 2026-01-10 04:39:23,898 [wrapper] ==== wrapper stderr END ====
[2026-01-09 23:39:45]  *** Error codes and diagnostics ***
[2026-01-09 23:39:45]     "exeErrorCode": 0,
[2026-01-09 23:39:45]     "exeErrorDiag": "",
[2026-01-09 23:39:45]     "pilotErrorCode": 0,
[2026-01-09 23:39:45]     "pilotErrorDiag": "",
[2026-01-09 23:39:45]  *** Listing of results directory ***
[2026-01-09 23:39:45] total 666360
[2026-01-09 23:39:45] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 23:39:45] -rwx------. 1 boincer umatlas     36322 Jan  8 20:01 runpilot2-wrapper.sh
[2026-01-09 23:39:45] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-09 23:39:45] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 20:06 queuedata.json
[2026-01-09 23:39:45] -rw-r--r--. 1 boincer umatlas       100 Jan  9 12:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 23:39:45] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 12:43 run_atlas
[2026-01-09 23:39:45] -rw-r--r--. 1 boincer umatlas       105 Jan  9 12:43 job.xml
[2026-01-09 23:39:45] -rw-r--r--. 3 boincer umatlas 225061110 Jan  9 12:43 EVNT.47898824._001414.pool.root.1
[2026-01-09 23:39:45] -rw-r--r--. 3 boincer umatlas 225061110 Jan  9 12:43 ATLAS.root_0
[2026-01-09 23:39:45] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 12:43 start_atlas.sh
[2026-01-09 23:39:45] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 12:43 shared
[2026-01-09 23:39:45] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 12:43 input.tar.gz
[2026-01-09 23:39:45] -rw-r--r--. 1 boincer umatlas         0 Jan  9 12:43 boinc_lockfile
[2026-01-09 23:39:45] -rw-r--r--. 1 boincer umatlas      2519 Jan  9 15:28 pandaJob.out
[2026-01-09 23:39:45] -rw-------. 1 boincer umatlas        57 Jan  9 15:28 setup.sh.local
[2026-01-09 23:39:45] -rw-------. 1 boincer umatlas    989381 Jan  9 15:29 agis_schedconf.cvmfs.json
[2026-01-09 23:39:45] -rw-r--r--. 1 boincer umatlas      6862 Jan  9 23:36 init_data.xml
[2026-01-09 23:39:45] -rw-------. 1 boincer umatlas 220706823 Jan  9 23:37 HITS.47898826._036885.pool.root.1
[2026-01-09 23:39:45] -rw-r--r--. 1 boincer umatlas       531 Jan  9 23:37 boinc_task_state.xml
[2026-01-09 23:39:45] -rw-------. 1 boincer umatlas        96 Jan  9 23:37 pilot_heartbeat.json
[2026-01-09 23:39:45] -rw-------. 1 boincer umatlas      1045 Jan  9 23:38 memory_monitor_summary.json
[2026-01-09 23:39:45] -rw-------. 1 boincer umatlas   1516240 Jan  9 23:38 agis_ddmendpoints.agis.ALL.json
[2026-01-09 23:39:45] -rw-------. 1 boincer umatlas    610811 Jan  9 23:38 log.47898826._036885.job.log.tgz.1
[2026-01-09 23:39:45] -rw-------. 1 boincer umatlas      7825 Jan  9 23:38 heartbeat.json
[2026-01-09 23:39:45] -rw-------. 1 boincer umatlas      4738 Jan  9 23:39 pilotlog.txt
[2026-01-09 23:39:45] -rw-------. 1 boincer umatlas   3186260 Jan  9 23:39 log.47898826._036885.job.log.1
[2026-01-09 23:39:45] -rw-------. 1 boincer umatlas       357 Jan  9 23:39 output.list
[2026-01-09 23:39:45] -rw-r--r--. 1 boincer umatlas       620 Jan  9 23:39 runtime_log
[2026-01-09 23:39:45] -rw-------. 1 boincer umatlas   3819520 Jan  9 23:39 result.tar.gz
[2026-01-09 23:39:45] -rw-r--r--. 1 boincer umatlas      9428 Jan  9 23:39 runtime_log.err
[2026-01-09 23:39:45] -rw-------. 1 boincer umatlas       782 Jan  9 23:39 j6JKDmv3Fy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmB3lKDmgfNRdm.diag
[2026-01-09 23:39:45] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 23:39 boinc_mmap_file
[2026-01-09 23:39:45] -rw-r--r--. 1 boincer umatlas        28 Jan  9 23:39 wrapper_checkpoint.txt
[2026-01-09 23:39:45] -rw-r--r--. 1 boincer umatlas     23503 Jan  9 23:39 stderr.txt
[2026-01-09 23:39:45] HITS file was successfully produced:
[2026-01-09 23:39:45] -rw-------. 1 boincer umatlas 220706823 Jan  9 23:37 shared/HITS.pool.root.1
[2026-01-09 23:39:45]  *** Contents of shared directory: ***
[2026-01-09 23:39:45] total 439660
[2026-01-09 23:39:45] -rw-r--r--. 3 boincer umatlas 225061110 Jan  9 12:43 ATLAS.root_0
[2026-01-09 23:39:45] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 12:43 start_atlas.sh
[2026-01-09 23:39:45] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 12:43 input.tar.gz
[2026-01-09 23:39:45] -rw-------. 1 boincer umatlas 220706823 Jan  9 23:37 HITS.pool.root.1
[2026-01-09 23:39:45] -rw-------. 1 boincer umatlas   3819520 Jan  9 23:39 result.tar.gz
23:39:47 (623417): run_atlas exited; CPU time 61481.694744
23:39:47 (623417): called boinc_finish(0)

</stderr_txt>
]]>

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