Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:29:04 (441455): wrapper (7.7.26015): starting
12:29:04 (441455): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 12:29:04] Arguments: --nthreads 9
[2026-01-09 12:29:04] Threads: 9
[2026-01-09 12:29:04] Checking for CVMFS
[2026-01-09 12:29:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 12:29:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 12:29:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 12:29:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 12:29:05] 2.13.3.0 11793 93711 396940 154951 2 384 23842794 32935937 26102 16776704 0 352559973 99.505 463321444 34943 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 12:29:05] CVMFS is ok
[2026-01-09 12:29:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 12:29:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 12:29:05] Further information can be found at the LHC@home message board.
[2026-01-09 12:29:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 12:29:05] Checking for apptainer binary...
[2026-01-09 12:29:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 12:29:05] Running /usr/bin/apptainer --version
[2026-01-09 12:29:05] apptainer version 1.4.5-2.el9
[2026-01-09 12:29:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 12:29:06] c6-2-11-2.aglt2.org
[2026-01-09 12:29:06] apptainer works
[2026-01-09 12:29:06] Set ATHENA_PROC_NUMBER=9
[2026-01-09 12:29:06] Set ATHENA_CORE_NUMBER=9
[2026-01-09 12:29:06] Starting ATLAS job with PandaID=6963166888
[2026-01-09 12:29:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 15:13:53]  *** The last 200 lines of the pilot log: ***
[2026-01-09 15:13:53] 2026-01-09 20:13:05,451 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2711.9443020833323
[2026-01-09 15:13:53] 2026-01-09 20:13:05,485 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963166888/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 15:13:53] 2026-01-09 20:13:05,490 | INFO     | extracted standard info from prmon json
[2026-01-09 15:13:53] 2026-01-09 20:13:05,491 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 15:13:53] 2026-01-09 20:13:05,491 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 15:13:53] 2026-01-09 20:13:05,491 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 15:13:53] 2026-01-09 20:13:05,491 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 15:13:53] 2026-01-09 20:13:05,495 | INFO     | fitting pss+swap vs Time
[2026-01-09 15:13:53] 2026-01-09 20:13:05,500 | INFO     | sum of square deviations: 1270058621.4937472
[2026-01-09 15:13:53] 2026-01-09 20:13:05,502 | INFO     | sum of deviations: -27348048838.525005
[2026-01-09 15:13:53] 2026-01-09 20:13:05,502 | INFO     | mean x: 1767984665.55625
[2026-01-09 15:13:53] 2026-01-09 20:13:05,502 | INFO     | mean y: 2588833.725
[2026-01-09 15:13:53] 2026-01-09 20:13:05,502 | INFO     | intersect: 38072430777.34245
[2026-01-09 15:13:53] 2026-01-09 20:13:05,502 | INFO     | chi2: 2.269192029582583
[2026-01-09 15:13:53] 2026-01-09 20:13:05,503 | INFO     | sum of square deviations: 1154673156.477419
[2026-01-09 15:13:53] 2026-01-09 20:13:05,504 | INFO     | sum of deviations: -15928048003.651615
[2026-01-09 15:13:53] 2026-01-09 20:13:05,504 | INFO     | mean x: 1767984513.0580645
[2026-01-09 15:13:53] 2026-01-09 20:13:05,504 | INFO     | mean y: 2603585.9612903227
[2026-01-09 15:13:53] 2026-01-09 20:13:05,504 | INFO     | intersect: 24390926840.665955
[2026-01-09 15:13:53] 2026-01-09 20:13:05,508 | INFO     | chi2: 1.5867634339934964
[2026-01-09 15:13:53] 2026-01-09 20:13:05,509 | INFO     | current chi2=1.5867634339934964 (change=30.073637959790428 %)
[2026-01-09 15:13:53] 2026-01-09 20:13:05,509 | INFO     | sum of square deviations: 1046497128.9600011
[2026-01-09 15:13:53] 2026-01-09 20:13:05,510 | INFO     | sum of deviations: -14904133665.039988
[2026-01-09 15:13:53] 2026-01-09 20:13:05,510 | INFO     | mean x: 1767984360.56
[2026-01-09 15:13:53] 2026-01-09 20:13:05,510 | INFO     | mean y: 2605029.8933333335
[2026-01-09 15:13:53] 2026-01-09 20:13:05,510 | INFO     | intersect: 25182105764.571068
[2026-01-09 15:13:53] 2026-01-09 20:13:05,511 | INFO     | chi2: 1.5848848615654176
[2026-01-09 15:13:53] 2026-01-09 20:13:05,511 | INFO     | current chi2=1.5848848615654176 (change=0.11839020157849577 %)
[2026-01-09 15:13:53] 2026-01-09 20:13:05,511 | INFO     | right removable region: 149
[2026-01-09 15:13:53] 2026-01-09 20:13:05,511 | INFO     | sum of square deviations: 1154667666.477419
[2026-01-09 15:13:53] 2026-01-09 20:13:05,512 | INFO     | sum of deviations: -50365884631.47742
[2026-01-09 15:13:53] 2026-01-09 20:13:05,516 | INFO     | mean x: 1767984818.0580645
[2026-01-09 15:13:53] 2026-01-09 20:13:05,516 | INFO     | mean y: 2618766.941935484
[2026-01-09 15:13:53] 2026-01-09 20:13:05,516 | INFO     | intersect: 77121015654.39604
[2026-01-09 15:13:53] 2026-01-09 20:13:05,517 | INFO     | chi2: 0.8635889836387025
[2026-01-09 15:13:53] 2026-01-09 20:13:05,517 | INFO     | current chi2=0.8635889836387025 (change=61.94288661424747 %)
[2026-01-09 15:13:53] 2026-01-09 20:13:05,517 | INFO     | sum of square deviations: 1046486148.9600011
[2026-01-09 15:13:53] 2026-01-09 20:13:05,518 | INFO     | sum of deviations: -45347979020.59999
[2026-01-09 15:13:53] 2026-01-09 20:13:05,518 | INFO     | mean x: 1767984970.56
[2026-01-09 15:13:53] 2026-01-09 20:13:05,518 | INFO     | mean y: 2611625.066666667
[2026-01-09 15:13:53] 2026-01-09 20:13:05,518 | INFO     | intersect: 76615709116.4845
[2026-01-09 15:13:53] 2026-01-09 20:13:05,519 | INFO     | chi2: 0.8508381240093627
[2026-01-09 15:13:53] 2026-01-09 20:13:05,519 | INFO     | current chi2=0.8508381240093627 (change=1.4764963276412528 %)
[2026-01-09 15:13:53] 2026-01-09 20:13:05,519 | INFO     | left removable region: 20
[2026-01-09 15:13:53] 2026-01-09 20:13:05,519 | INFO     | sum of square deviations: 665623345.5038763
[2026-01-09 15:13:53] 2026-01-09 20:13:05,524 | INFO     | sum of deviations: -18752121270.06202
[2026-01-09 15:13:53] 2026-01-09 20:13:05,524 | INFO     | mean x: 1767984940.0620155
[2026-01-09 15:13:53] 2026-01-09 20:13:05,524 | INFO     | mean y: 2606300.007751938
[2026-01-09 15:13:53] 2026-01-09 20:13:05,525 | INFO     | intersect: 49810757146.32324
[2026-01-09 15:13:53] 2026-01-09 20:13:05,525 | INFO     | chi2: 0.08061406635331016
[2026-01-09 15:13:53] 2026-01-09 20:13:05,525 | INFO     | current memory leak: -28.17 B/s (using 129 data points, chi2=0.08)
[2026-01-09 15:13:53] 2026-01-09 20:13:05,526 | INFO     | could have reported an average CPU frequency of 2670 MHz (9 samples)
[2026-01-09 15:13:53] 2026-01-09 20:13:05,526 | INFO     | ..............................
[2026-01-09 15:13:53] 2026-01-09 20:13:05,526 | INFO     | . Timing measurements:
[2026-01-09 15:13:53] 2026-01-09 20:13:05,526 | INFO     | . get job = 0 s
[2026-01-09 15:13:53] 2026-01-09 20:13:05,526 | INFO     | . initial setup = 2 s
[2026-01-09 15:13:53] 2026-01-09 20:13:05,526 | INFO     | . payload setup = 12 s
[2026-01-09 15:13:53] 2026-01-09 20:13:05,526 | INFO     | . stage-in = 0 s
[2026-01-09 15:13:53] 2026-01-09 20:13:05,526 | INFO     | . payload execution = 9744 s
[2026-01-09 15:13:53] 2026-01-09 20:13:05,526 | INFO     | . stage-out = 2 s
[2026-01-09 15:13:53] 2026-01-09 20:13:05,529 | INFO     | . log creation = 0 s
[2026-01-09 15:13:53] 2026-01-09 20:13:05,529 | INFO     | ..............................
[2026-01-09 15:13:53] 2026-01-09 20:13:06,116 | INFO     | 
[2026-01-09 15:13:53] 2026-01-09 20:13:06,116 | INFO     | job summary report
[2026-01-09 15:13:53] 2026-01-09 20:13:06,116 | INFO     | --------------------------------------------------
[2026-01-09 15:13:53] 2026-01-09 20:13:06,116 | INFO     | PanDA job id: 6963166888
[2026-01-09 15:13:53] 2026-01-09 20:13:06,117 | INFO     | task id: 47898826
[2026-01-09 15:13:53] 2026-01-09 20:13:06,117 | INFO     | errors: (none)
[2026-01-09 15:13:53] 2026-01-09 20:13:06,117 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 15:13:53] 2026-01-09 20:13:06,117 | INFO     | pilot state: finished 
[2026-01-09 15:13:53] 2026-01-09 20:13:06,117 | INFO     | transexitcode: 0
[2026-01-09 15:13:53] 2026-01-09 20:13:06,117 | INFO     | exeerrorcode: 0
[2026-01-09 15:13:53] 2026-01-09 20:13:06,117 | INFO     | exeerrordiag: 
[2026-01-09 15:13:53] 2026-01-09 20:13:06,117 | INFO     | exitcode: 0
[2026-01-09 15:13:53] 2026-01-09 20:13:06,117 | INFO     | exitmsg: OK
[2026-01-09 15:13:53] 2026-01-09 20:13:06,117 | INFO     | cpuconsumptiontime: 59629 s
[2026-01-09 15:13:53] 2026-01-09 20:13:06,117 | INFO     | nevents: 400
[2026-01-09 15:13:53] 2026-01-09 20:13:06,117 | INFO     | neventsw: 0
[2026-01-09 15:13:53] 2026-01-09 20:13:06,117 | INFO     | pid: 453319
[2026-01-09 15:13:53] 2026-01-09 20:13:06,117 | INFO     | pgrp: 453319
[2026-01-09 15:13:53] 2026-01-09 20:13:06,117 | INFO     | corecount: 9
[2026-01-09 15:13:53] 2026-01-09 20:13:06,118 | INFO     | event service: False
[2026-01-09 15:13:53] 2026-01-09 20:13:06,118 | INFO     | sizes: {0: 2283971, 1: 2283999, 10: 2284261, 12: 2284289, 9760: 2313128, 9765: 2322126, 9766: 2322310, 9792: 2322568}
[2026-01-09 15:13:53] 2026-01-09 20:13:06,118 | INFO     | --------------------------------------------------
[2026-01-09 15:13:53] 2026-01-09 20:13:06,118 | INFO     | 
[2026-01-09 15:13:53] 2026-01-09 20:13:06,118 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 15:13:53] 2026-01-09 20:13:06,169 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 15:13:53] 2026-01-09 20:13:06,170 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 15:13:53] 2026-01-09 20:13:06,170 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 15:13:53] 2026-01-09 20:13:06,170 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 15:13:53] 2026-01-09 20:13:06,170 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 15:13:53] 2026-01-09 20:13:06,170 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 15:13:53] 2026-01-09 20:13:06,170 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 15:13:53] 2026-01-09 20:13:06,170 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 15:13:53] 2026-01-09 20:13:06,170 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 15:13:53] 2026-01-09 20:13:06,170 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 15:13:53] 2026-01-09 20:13:06,170 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 15:13:53] 2026-01-09 20:13:06,171 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 15:13:53] 2026-01-09 20:13:06,171 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 15:13:53] 2026-01-09 20:13:06,171 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 15:13:53] 2026-01-09 20:13:06,171 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 15:13:53] 2026-01-09 20:13:06,171 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 15:13:53] 2026-01-09 20:13:06,171 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 15:13:53] 2026-01-09 20:13:06,184 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 15:13:53] 2026-01-09 20:13:06,184 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 15:13:53] 2026-01-09 20:13:06,184 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 15:13:53] 2026-01-09 20:13:06,184 | INFO     | job 6963166888 has completed (purged errors)
[2026-01-09 15:13:53] 2026-01-09 20:13:06,184 | INFO     | overall cleanup function is called
[2026-01-09 15:13:53] 2026-01-09 20:13:07,212 | INFO     | --- collectZombieJob: --- 10, [453319]
[2026-01-09 15:13:53] 2026-01-09 20:13:07,212 | INFO     | zombie collector waiting for pid 453319
[2026-01-09 15:13:53] 2026-01-09 20:13:07,212 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 15:13:53] 2026-01-09 20:13:07,212 | INFO     | collected zombie processes
[2026-01-09 15:13:53] 2026-01-09 20:13:07,213 | INFO     | will attempt to kill all subprocesses of pid=453319
[2026-01-09 15:13:53] 2026-01-09 20:13:07,914 | INFO     | PID=445697 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 15:13:53] 2026-01-09 20:13:07,914 | INFO     | .. there are 24 such processes running
[2026-01-09 15:13:53] 2026-01-09 20:13:08,409 | INFO     | process IDs to be killed: [453319] (in reverse order)
[2026-01-09 15:13:53] 2026-01-09 20:13:08,712 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 15:13:53] 2026-01-09 20:13:08,712 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 15:13:53] 2026-01-09 20:13:08,735 | INFO     | did not find any defunct processes belonging to 453319
[2026-01-09 15:13:53] 2026-01-09 20:13:08,775 | INFO     | did not find any defunct processes belonging to 453319
[2026-01-09 15:13:53] 2026-01-09 20:13:08,776 | INFO     | ready for new job
[2026-01-09 15:13:53] 2026-01-09 20:13:08,776 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 15:13:53] 2026-01-09 20:13:08,785 | INFO     | ***************************************
[2026-01-09 15:13:53] 2026-01-09 20:13:08,786 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 15:13:53] 2026-01-09 20:13:08,786 | INFO     | ***************************************
[2026-01-09 15:13:53] 2026-01-09 20:13:08,786 | INFO     | 
[2026-01-09 15:13:53] 2026-01-09 20:13:08,797 | INFO     | architecture information:
[2026-01-09 15:13:53] 2026-01-09 20:13:08,806 | INFO     | executing command: cat /etc/os-release
[2026-01-09 15:13:53] 2026-01-09 20:13:08,853 | INFO     | cat /etc/os-release:
[2026-01-09 15:13:53] NAME="CentOS Linux"
[2026-01-09 15:13:53] VERSION="7 (Core)"
[2026-01-09 15:13:53] ID="centos"
[2026-01-09 15:13:53] ID_LIKE="rhel fedora"
[2026-01-09 15:13:53] VERSION_ID="7"
[2026-01-09 15:13:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 15:13:53] ANSI_COLOR="0;31"
[2026-01-09 15:13:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 15:13:53] HOME_URL="https://www.centos.org/"
[2026-01-09 15:13:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 15:13:53] 
[2026-01-09 15:13:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 15:13:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 15:13:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 15:13:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 15:13:53] 
[2026-01-09 15:13:53] 2026-01-09 20:13:08,854 | INFO     | ***************************************
[2026-01-09 15:13:53] 2026-01-09 20:13:09,370 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 15:13:53] 2026-01-09 20:13:09,415 | INFO     | sufficient remaining disk space (93318021120 B)
[2026-01-09 15:13:53] 2026-01-09 20:13:09,416 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 15:13:53] 2026-01-09 20:13:09,416 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 15:13:53] 2026-01-09 20:13:09,416 | INFO     | update_server=False
[2026-01-09 15:13:53] 2026-01-09 20:13:09,416 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 15:13:53] 2026-01-09 20:13:09,416 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 15:13:53] 2026-01-09 20:13:09,714 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 15:13:53] 2026-01-09 20:13:09,801 | INFO     | all data control threads have been joined
[2026-01-09 15:13:53] 2026-01-09 20:13:10,149 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 15:13:53] 2026-01-09 20:13:10,150 | INFO     | aborting loop
[2026-01-09 15:13:53] 2026-01-09 20:13:10,205 | INFO     | all payload control threads have been joined
[2026-01-09 15:13:53] 2026-01-09 20:13:10,324 | INFO     | all job control threads have been joined
[2026-01-09 15:13:53] 2026-01-09 20:13:10,422 | INFO     | [job] retrieve thread has finished
[2026-01-09 15:13:53] 2026-01-09 20:13:10,642 | INFO     | [payload] failed_post thread has finished
[2026-01-09 15:13:53] 2026-01-09 20:13:10,720 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 15:13:53] 2026-01-09 20:13:10,779 | INFO     | [data] copytool_in thread has finished
[2026-01-09 15:13:53] 2026-01-09 20:13:10,780 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 15:13:53] 2026-01-09 20:13:10,806 | INFO     | [data] control thread has finished
[2026-01-09 15:13:53] 2026-01-09 20:13:11,159 | INFO     | [job] job monitor thread has finished
[2026-01-09 15:13:53] 2026-01-09 20:13:11,211 | INFO     | [payload] control thread has finished
[2026-01-09 15:13:53] 2026-01-09 20:13:11,332 | INFO     | [job] control thread has finished
[2026-01-09 15:13:53] 2026-01-09 20:13:11,457 | INFO     | [payload] validate_post thread has finished
[2026-01-09 15:13:53] 2026-01-09 20:13:11,490 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 15:13:53] 2026-01-09 20:13:11,673 | INFO     | [job] validate thread has finished
[2026-01-09 15:13:53] 2026-01-09 20:13:11,722 | INFO     | [data] copytool_out thread has finished
[2026-01-09 15:13:53] 2026-01-09 20:13:11,724 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 15:13:53] 2026-01-09 20:13:11,785 | INFO     | [job] queue monitor thread has finished
[2026-01-09 15:13:53] 2026-01-09 20:13:13,425 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 15:13:53] 2026-01-09 20:13:19,912 | INFO     | job.realtimelogging is not enabled
[2026-01-09 15:13:53] 2026-01-09 20:13:20,918 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 15:13:53] 2026-01-09 20:13:41,010 | INFO     | PID=445697 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 15:13:53] 2026-01-09 20:13:41,010 | INFO     | .. there are 24 such processes running
[2026-01-09 15:13:53] 2026-01-09 20:13:41,010 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 15:13:53] 2026-01-09 20:13:41,011 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 15:13:53] 2026-01-09 20:13:41,011 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 15:13:53] 2026-01-09 20:13:46,951 | INFO     | [monitor] cgroup control has ended
[2026-01-09 15:13:53] 2026-01-09 20:13:47,575 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140314297726784)>', '<ExcThread(monitor, started 140313788131072)>']
[2026-01-09 15:13:53] 2026-01-09 20:13:48,056 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 15:13:53] 2026-01-09 20:13:48,056 | INFO     | [monitor] control thread has ended
[2026-01-09 15:13:53] 2026-01-09 20:13:52,601 | INFO     | all workflow threads have been joined
[2026-01-09 15:13:53] 2026-01-09 20:13:52,601 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 15:13:53] 2026-01-09 20:13:52,602 | INFO     | traces error code: 0
[2026-01-09 15:13:53] 2026-01-09 20:13:52,602 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 15:13:53] 2026-01-09 20:13:52,853 [wrapper] ==== pilot stdout END ====
[2026-01-09 15:13:53] 2026-01-09 20:13:52,857 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 15:13:53] 2026-01-09 20:13:52,859 [wrapper] pilotpid: 445697
[2026-01-09 15:13:53] 2026-01-09 20:13:52,861 [wrapper] Pilot exit status: 0
[2026-01-09 15:13:53] 2026-01-09 20:13:52,939 [wrapper] pandaids: 6963166888
[2026-01-09 15:13:53] 2026-01-09 20:13:53,118 [wrapper] cleanup supervisor_pilot  933795 445698
[2026-01-09 15:13:53] 2026-01-09 20:13:53,133 [wrapper] Test setup, not cleaning
[2026-01-09 15:13:53] 2026-01-09 20:13:53,137 [wrapper] apfmon messages muted
[2026-01-09 15:13:53] 2026-01-09 20:13:53,141 [wrapper] ==== wrapper stdout END ====
[2026-01-09 15:13:53] 2026-01-09 20:13:53,143 [wrapper] ==== wrapper stderr END ====
[2026-01-09 15:13:53]  *** Error codes and diagnostics ***
[2026-01-09 15:13:53]     "exeErrorCode": 0,
[2026-01-09 15:13:53]     "exeErrorDiag": "",
[2026-01-09 15:13:53]     "pilotErrorCode": 0,
[2026-01-09 15:13:53]     "pilotErrorDiag": "",
[2026-01-09 15:13:53]  *** Listing of results directory ***
[2026-01-09 15:13:53] total 438824
[2026-01-09 15:13:53] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-09 15:13:53] -rwx------. 1 boincer umatlas     36322 Jan  8 19:59 runpilot2-wrapper.sh
[2026-01-09 15:13:53] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 20:02 queuedata.json
[2026-01-09 15:13:53] -rw-r--r--. 1 boincer umatlas       100 Jan  9 12:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 15:13:53] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 12:29 run_atlas
[2026-01-09 15:13:53] -rw-r--r--. 1 boincer umatlas       105 Jan  9 12:29 job.xml
[2026-01-09 15:13:53] -rw-r--r--. 2 boincer umatlas 223864180 Jan  9 12:29 EVNT.47898824._001367.pool.root.1
[2026-01-09 15:13:53] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 12:29 start_atlas.sh
[2026-01-09 15:13:53] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 12:29 shared
[2026-01-09 15:13:53] -rw-r--r--. 2 boincer umatlas    592402 Jan  9 12:29 input.tar.gz
[2026-01-09 15:13:53] -rw-r--r--. 1 boincer umatlas         0 Jan  9 12:29 boinc_lockfile
[2026-01-09 15:13:53] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 12:29 pandaJob.out
[2026-01-09 15:13:53] -rw-------. 1 boincer umatlas        57 Jan  9 12:29 setup.sh.local
[2026-01-09 15:13:53] -rw-------. 1 boincer umatlas    989356 Jan  9 12:29 agis_schedconf.cvmfs.json
[2026-01-09 15:13:53] -rw-------. 1 boincer umatlas   1516240 Jan  9 12:29 agis_ddmendpoints.agis.ALL.json
[2026-01-09 15:13:53] drwx------. 5 boincer umatlas      4096 Jan  9 12:29 pilot3
[2026-01-09 15:13:53] -rw-r--r--. 1 boincer umatlas      6876 Jan  9 15:10 init_data.xml
[2026-01-09 15:13:53] -rw-------. 1 boincer umatlas 218069675 Jan  9 15:11 HITS.47898826._035294.pool.root.1
[2026-01-09 15:13:53] -rw-r--r--. 1 boincer umatlas       529 Jan  9 15:11 boinc_task_state.xml
[2026-01-09 15:13:53] -rw-------. 1 boincer umatlas      1041 Jan  9 15:12 memory_monitor_summary.json
[2026-01-09 15:13:53] -rw-------. 1 boincer umatlas    423783 Jan  9 15:12 log.47898826._035294.job.log.tgz.1
[2026-01-09 15:13:53] -rw-------. 1 boincer umatlas      7828 Jan  9 15:13 heartbeat.json
[2026-01-09 15:13:53] -rw-------. 1 boincer umatlas        95 Jan  9 15:13 pilot_heartbeat.json
[2026-01-09 15:13:53] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 15:13 boinc_mmap_file
[2026-01-09 15:13:53] -rw-r--r--. 1 boincer umatlas        27 Jan  9 15:13 wrapper_checkpoint.txt
[2026-01-09 15:13:53] -rw-------. 1 boincer umatlas      4895 Jan  9 15:13 pilotlog.txt
[2026-01-09 15:13:53] -rw-------. 1 boincer umatlas   1327880 Jan  9 15:13 log.47898826._035294.job.log.1
[2026-01-09 15:13:53] -rw-------. 1 boincer umatlas       357 Jan  9 15:13 output.list
[2026-01-09 15:13:53] -rw-r--r--. 1 boincer umatlas       620 Jan  9 15:13 runtime_log
[2026-01-09 15:13:53] -rw-------. 1 boincer umatlas   1771520 Jan  9 15:13 result.tar.gz
[2026-01-09 15:13:53] -rw-r--r--. 1 boincer umatlas      9347 Jan  9 15:13 runtime_log.err
[2026-01-09 15:13:53] -rw-------. 1 boincer umatlas       654 Jan  9 15:13 FTUMDmM1Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbkgKDm0zpOXm.diag
[2026-01-09 15:13:53] -rw-r--r--. 1 boincer umatlas     21237 Jan  9 15:13 stderr.txt
[2026-01-09 15:13:53] HITS file was successfully produced:
[2026-01-09 15:13:53] -rw-------. 1 boincer umatlas 218069675 Jan  9 15:11 shared/HITS.pool.root.1
[2026-01-09 15:13:53]  *** Contents of shared directory: ***
[2026-01-09 15:13:53] total 433912
[2026-01-09 15:13:53] -rw-r--r--. 2 boincer umatlas 223864180 Jan  9 12:29 ATLAS.root_0
[2026-01-09 15:13:53] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 12:29 start_atlas.sh
[2026-01-09 15:13:53] -rw-r--r--. 2 boincer umatlas    592402 Jan  9 12:29 input.tar.gz
[2026-01-09 15:13:53] -rw-------. 1 boincer umatlas 218069675 Jan  9 15:11 HITS.pool.root.1
[2026-01-09 15:13:53] -rw-------. 1 boincer umatlas   1771520 Jan  9 15:13 result.tar.gz
15:13:54 (441455): run_atlas exited; CPU time 60084.103522
15:13:54 (441455): called boinc_finish(0)

</stderr_txt>
]]>

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