Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:18:29 (2881066): wrapper (7.7.26015): starting
13:18:29 (2881066): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 13:18:29] Arguments: --nthreads 8
[2026-01-09 13:18:29] Threads: 8
[2026-01-09 13:18:29] Checking for CVMFS
[2026-01-09 13:18:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 13:18:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 13:18:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 13:18:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 13:18:53] 2.13.3.0 13037 30427 286884 154951 0 137 26043416 32935936 18101 16776704 0 28760349 99.599 28943958 13771 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 13:18:53] CVMFS is ok
[2026-01-09 13:18:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 13:18:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 13:18:53] Further information can be found at the LHC@home message board.
[2026-01-09 13:18:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 13:18:53] Checking for apptainer binary...
[2026-01-09 13:18:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 13:18:53] Running /usr/bin/apptainer --version
[2026-01-09 13:18:54] apptainer version 1.4.5-2.el9
[2026-01-09 13:18:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 13:18:55] c6-12-25-3.aglt2.org
[2026-01-09 13:18:55] apptainer works
[2026-01-09 13:18:55] Set ATHENA_PROC_NUMBER=8
[2026-01-09 13:18:55] Set ATHENA_CORE_NUMBER=8
[2026-01-09 13:18:55] Starting ATLAS job with PandaID=6963165625
[2026-01-09 13:18:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 05:07:04]  *** The last 200 lines of the pilot log: ***
[2026-01-10 05:07:04] 2026-01-10 10:06:21,645 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-10 05:07:04] 2026-01-10 10:06:21,750 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 999.9993333333332
[2026-01-10 05:07:04] 2026-01-10 10:06:21,897 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963165625/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 05:07:04] 2026-01-10 10:06:21,898 | INFO     | extracted standard info from prmon json
[2026-01-10 05:07:04] 2026-01-10 10:06:21,898 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 05:07:04] 2026-01-10 10:06:21,899 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 05:07:04] 2026-01-10 10:06:21,903 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 05:07:04] 2026-01-10 10:06:21,907 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 05:07:04] 2026-01-10 10:06:21,982 | INFO     | fitting pss+swap vs Time
[2026-01-10 05:07:04] 2026-01-10 10:06:21,990 | INFO     | sum of square deviations: 246212378187.08853
[2026-01-10 05:07:04] 2026-01-10 10:06:22,154 | INFO     | sum of deviations: 359177425779.4245
[2026-01-10 05:07:04] 2026-01-10 10:06:22,155 | INFO     | mean x: 1768011282.086393
[2026-01-10 05:07:04] 2026-01-10 10:06:22,155 | INFO     | mean y: 2477753.2321814257
[2026-01-10 05:07:04] 2026-01-10 10:06:22,155 | INFO     | intersect: -2576717272.3169923
[2026-01-10 05:07:04] 2026-01-10 10:06:22,163 | INFO     | chi2: 9.871982078602013
[2026-01-10 05:07:04] 2026-01-10 10:06:22,170 | INFO     | sum of square deviations: 242245989051.9369
[2026-01-10 05:07:04] 2026-01-10 10:06:22,331 | INFO     | sum of deviations: 649228649957.6158
[2026-01-10 05:07:04] 2026-01-10 10:06:22,332 | INFO     | mean x: 1768011129.5950055
[2026-01-10 05:07:04] 2026-01-10 10:06:22,332 | INFO     | mean y: 2488904.6558089033
[2026-01-10 05:07:04] 2026-01-10 10:06:22,332 | INFO     | intersect: -4735849522.614954
[2026-01-10 05:07:04] 2026-01-10 10:06:22,339 | INFO     | chi2: 6.357655739992854
[2026-01-10 05:07:04] 2026-01-10 10:06:22,340 | INFO     | current chi2=6.357655739992854 (change=35.59899431165528 %)
[2026-01-10 05:07:04] 2026-01-10 10:06:22,347 | INFO     | sum of square deviations: 238322325693.5575
[2026-01-10 05:07:04] 2026-01-10 10:06:22,488 | INFO     | sum of deviations: 768244265583.6176
[2026-01-10 05:07:04] 2026-01-10 10:06:22,489 | INFO     | mean x: 1768010977.1015284
[2026-01-10 05:07:04] 2026-01-10 10:06:22,489 | INFO     | mean y: 2493514.8427947597
[2026-01-10 05:07:04] 2026-01-10 10:06:22,489 | INFO     | intersect: -5696780737.765992
[2026-01-10 05:07:04] 2026-01-10 10:06:22,497 | INFO     | chi2: 4.840985861365575
[2026-01-10 05:07:04] 2026-01-10 10:06:22,497 | INFO     | current chi2=4.840985861365575 (change=23.855803784509156 %)
[2026-01-10 05:07:04] 2026-01-10 10:06:22,497 | INFO     | right removable region: 915
[2026-01-10 05:07:04] 2026-01-10 10:06:22,505 | INFO     | sum of square deviations: 242245092961.93692
[2026-01-10 05:07:04] 2026-01-10 10:06:22,638 | INFO     | sum of deviations: 70315824239.0759
[2026-01-10 05:07:04] 2026-01-10 10:06:22,638 | INFO     | mean x: 1768011434.5950055
[2026-01-10 05:07:04] 2026-01-10 10:06:22,643 | INFO     | mean y: 2488851.799131379
[2026-01-10 05:07:04] 2026-01-10 10:06:22,643 | INFO     | intersect: -510707018.4148121
[2026-01-10 05:07:04] 2026-01-10 10:06:22,646 | INFO     | chi2: 6.357761233081417
[2026-01-10 05:07:04] 2026-01-10 10:06:22,651 | INFO     | current chi2=6.357761233081417 (change=35.59792570063347 %)
[2026-01-10 05:07:04] 2026-01-10 10:06:22,654 | INFO     | sum of square deviations: 238320870357.9597
[2026-01-10 05:07:04] 2026-01-10 10:06:22,864 | INFO     | sum of deviations: -76244321541.4925
[2026-01-10 05:07:04] 2026-01-10 10:06:22,873 | INFO     | mean x: 1768011587.099345
[2026-01-10 05:07:04] 2026-01-10 10:06:22,873 | INFO     | mean y: 2494542.346069869
[2026-01-10 05:07:04] 2026-01-10 10:06:22,873 | INFO     | intersect: 568122066.8403159
[2026-01-10 05:07:04] 2026-01-10 10:06:22,881 | INFO     | chi2: 5.426262337633717
[2026-01-10 05:07:04] 2026-01-10 10:06:22,881 | INFO     | current chi2=5.426262337633717 (change=14.651366436990756 %)
[2026-01-10 05:07:04] 2026-01-10 10:06:22,881 | INFO     | left removable region: 20
[2026-01-10 05:07:04] 2026-01-10 10:06:22,884 | INFO     | sum of square deviations: 222303037708.10773
[2026-01-10 05:07:04] 2026-01-10 10:06:23,127 | INFO     | sum of deviations: 253749420994.0544
[2026-01-10 05:07:04] 2026-01-10 10:06:23,127 | INFO     | mean x: 1768011556.6234636
[2026-01-10 05:07:04] 2026-01-10 10:06:23,127 | INFO     | mean y: 2513837.130726257
[2026-01-10 05:07:04] 2026-01-10 10:06:23,128 | INFO     | intersect: -2015595827.178366
[2026-01-10 05:07:04] 2026-01-10 10:06:23,135 | INFO     | chi2: 0.1872293368008234
[2026-01-10 05:07:04] 2026-01-10 10:06:23,135 | INFO     | current memory leak: 1.14 B/s (using 895 data points, chi2=0.19)
[2026-01-10 05:07:04] 2026-01-10 10:06:23,141 | INFO     | could have reported an average CPU frequency of 1000 MHz (34 samples)
[2026-01-10 05:07:04] 2026-01-10 10:06:23,142 | INFO     | ..............................
[2026-01-10 05:07:04] 2026-01-10 10:06:23,142 | INFO     | . Timing measurements:
[2026-01-10 05:07:04] 2026-01-10 10:06:23,142 | INFO     | . get job = 1 s
[2026-01-10 05:07:04] 2026-01-10 10:06:23,143 | INFO     | . initial setup = 10 s
[2026-01-10 05:07:04] 2026-01-10 10:06:23,143 | INFO     | . payload setup = 60 s
[2026-01-10 05:07:04] 2026-01-10 10:06:23,143 | INFO     | . stage-in = 1 s
[2026-01-10 05:07:04] 2026-01-10 10:06:23,143 | INFO     | . payload execution = 56485 s
[2026-01-10 05:07:04] 2026-01-10 10:06:23,143 | INFO     | . stage-out = 15 s
[2026-01-10 05:07:04] 2026-01-10 10:06:23,144 | INFO     | . log creation = 4 s
[2026-01-10 05:07:04] 2026-01-10 10:06:23,144 | INFO     | ..............................
[2026-01-10 05:07:04] 2026-01-10 10:06:24,157 | INFO     | 
[2026-01-10 05:07:04] 2026-01-10 10:06:24,157 | INFO     | job summary report
[2026-01-10 05:07:04] 2026-01-10 10:06:24,157 | INFO     | --------------------------------------------------
[2026-01-10 05:07:04] 2026-01-10 10:06:24,158 | INFO     | PanDA job id: 6963165625
[2026-01-10 05:07:04] 2026-01-10 10:06:24,158 | INFO     | task id: 47898826
[2026-01-10 05:07:04] 2026-01-10 10:06:24,158 | INFO     | errors: (none)
[2026-01-10 05:07:04] 2026-01-10 10:06:24,158 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 05:07:04] 2026-01-10 10:06:24,158 | INFO     | pilot state: finished 
[2026-01-10 05:07:04] 2026-01-10 10:06:24,159 | INFO     | transexitcode: 0
[2026-01-10 05:07:04] 2026-01-10 10:06:24,159 | INFO     | exeerrorcode: 0
[2026-01-10 05:07:04] 2026-01-10 10:06:24,159 | INFO     | exeerrordiag: 
[2026-01-10 05:07:04] 2026-01-10 10:06:24,159 | INFO     | exitcode: 0
[2026-01-10 05:07:04] 2026-01-10 10:06:24,159 | INFO     | exitmsg: OK
[2026-01-10 05:07:04] 2026-01-10 10:06:24,160 | INFO     | cpuconsumptiontime: 152329 s
[2026-01-10 05:07:04] 2026-01-10 10:06:24,160 | INFO     | nevents: 400
[2026-01-10 05:07:04] 2026-01-10 10:06:24,160 | INFO     | neventsw: 0
[2026-01-10 05:07:04] 2026-01-10 10:06:24,160 | INFO     | pid: 2904504
[2026-01-10 05:07:04] 2026-01-10 10:06:24,160 | INFO     | pgrp: 2904504
[2026-01-10 05:07:04] 2026-01-10 10:06:24,165 | INFO     | corecount: 8
[2026-01-10 05:07:04] 2026-01-10 10:06:24,165 | INFO     | event service: False
[2026-01-10 05:07:04] 2026-01-10 10:06:24,165 | INFO     | sizes: {0: 2283143, 2: 2283744, 3: 2283828, 6: 2283884, 7: 2283884, 8: 2284055, 10: 2284211, 24: 2284239, 36: 2284267, 48: 2284295, 57: 2284585, 59: 2284893, 56553
[2026-01-10 05:07:04] 2026-01-10 10:06:24,166 | INFO     | --------------------------------------------------
[2026-01-10 05:07:04] 2026-01-10 10:06:24,166 | INFO     | 
[2026-01-10 05:07:04] 2026-01-10 10:06:24,166 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-10 05:07:04] 2026-01-10 10:06:24,481 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 05:07:04] 2026-01-10 10:06:24,481 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 05:07:04] 2026-01-10 10:06:24,481 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 05:07:04] 2026-01-10 10:06:24,482 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 05:07:04] 2026-01-10 10:06:24,482 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 05:07:04] 2026-01-10 10:06:24,482 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 05:07:04] 2026-01-10 10:06:24,482 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 05:07:04] 2026-01-10 10:06:24,482 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 05:07:04] 2026-01-10 10:06:24,483 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 05:07:04] 2026-01-10 10:06:24,483 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 05:07:04] 2026-01-10 10:06:24,483 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 05:07:04] 2026-01-10 10:06:24,483 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 05:07:04] 2026-01-10 10:06:24,483 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 05:07:04] 2026-01-10 10:06:24,568 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 05:07:04] 2026-01-10 10:06:24,568 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 05:07:04] 2026-01-10 10:06:24,568 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 05:07:04] 2026-01-10 10:06:24,569 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 05:07:04] 2026-01-10 10:06:24,569 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 05:07:04] 2026-01-10 10:06:24,569 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 05:07:04] 2026-01-10 10:06:24,569 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 05:07:04] 2026-01-10 10:06:24,570 | INFO     | job 6963165625 has completed (purged errors)
[2026-01-10 05:07:04] 2026-01-10 10:06:24,570 | INFO     | overall cleanup function is called
[2026-01-10 05:07:04] 2026-01-10 10:06:25,090 | INFO     | PID=2888183 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 05:07:04] 2026-01-10 10:06:25,090 | INFO     | .. there are 17 such processes running
[2026-01-10 05:07:04] 2026-01-10 10:06:25,596 | INFO     | --- collectZombieJob: --- 10, [2904504]
[2026-01-10 05:07:04] 2026-01-10 10:06:25,596 | INFO     | zombie collector waiting for pid 2904504
[2026-01-10 05:07:04] 2026-01-10 10:06:25,597 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 05:07:04] 2026-01-10 10:06:25,597 | INFO     | collected zombie processes
[2026-01-10 05:07:04] 2026-01-10 10:06:25,597 | INFO     | will attempt to kill all subprocesses of pid=2904504
[2026-01-10 05:07:04] 2026-01-10 10:06:27,445 | INFO     | process IDs to be killed: [2904504] (in reverse order)
[2026-01-10 05:07:04] 2026-01-10 10:06:27,812 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 05:07:04] 2026-01-10 10:06:27,812 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 05:07:04] 2026-01-10 10:06:27,893 | INFO     | did not find any defunct processes belonging to 2904504
[2026-01-10 05:07:04] 2026-01-10 10:06:27,955 | INFO     | did not find any defunct processes belonging to 2904504
[2026-01-10 05:07:04] 2026-01-10 10:06:27,956 | INFO     | ready for new job
[2026-01-10 05:07:04] 2026-01-10 10:06:27,956 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 05:07:04] 2026-01-10 10:06:27,967 | INFO     | ***************************************
[2026-01-10 05:07:04] 2026-01-10 10:06:27,967 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 05:07:04] 2026-01-10 10:06:27,967 | INFO     | ***************************************
[2026-01-10 05:07:04] 2026-01-10 10:06:27,972 | INFO     | 
[2026-01-10 05:07:04] 2026-01-10 10:06:27,997 | INFO     | architecture information:
[2026-01-10 05:07:04] 2026-01-10 10:06:28,006 | INFO     | executing command: cat /etc/os-release
[2026-01-10 05:07:04] 2026-01-10 10:06:28,119 | INFO     | cat /etc/os-release:
[2026-01-10 05:07:04] NAME="CentOS Linux"
[2026-01-10 05:07:04] VERSION="7 (Core)"
[2026-01-10 05:07:04] ID="centos"
[2026-01-10 05:07:04] ID_LIKE="rhel fedora"
[2026-01-10 05:07:04] VERSION_ID="7"
[2026-01-10 05:07:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 05:07:04] ANSI_COLOR="0;31"
[2026-01-10 05:07:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 05:07:04] HOME_URL="https://www.centos.org/"
[2026-01-10 05:07:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 05:07:04] 
[2026-01-10 05:07:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 05:07:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 05:07:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 05:07:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 05:07:04] 
[2026-01-10 05:07:04] 2026-01-10 10:06:28,120 | INFO     | ***************************************
[2026-01-10 05:07:04] 2026-01-10 10:06:28,623 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-10 05:07:04] 2026-01-10 10:06:28,781 | INFO     | sufficient remaining disk space (94233427968 B)
[2026-01-10 05:07:04] 2026-01-10 10:06:28,782 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 05:07:04] 2026-01-10 10:06:28,782 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 05:07:04] 2026-01-10 10:06:28,783 | INFO     | update_server=False
[2026-01-10 05:07:04] 2026-01-10 10:06:28,783 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 05:07:04] 2026-01-10 10:06:29,181 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 05:07:04] 2026-01-10 10:06:29,280 | INFO     | all data control threads have been joined
[2026-01-10 05:07:04] 2026-01-10 10:06:29,767 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 05:07:04] 2026-01-10 10:06:29,767 | INFO     | aborting loop
[2026-01-10 05:07:04] 2026-01-10 10:06:29,791 | INFO     | [job] retrieve thread has finished
[2026-01-10 05:07:04] 2026-01-10 10:06:29,868 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 05:07:04] 2026-01-10 10:06:29,900 | INFO     | all payload control threads have been joined
[2026-01-10 05:07:04] 2026-01-10 10:06:29,990 | INFO     | [payload] failed_post thread has finished
[2026-01-10 05:07:04] 2026-01-10 10:06:30,125 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 05:07:04] 2026-01-10 10:06:30,189 | INFO     | [job] queue monitor thread has finished
[2026-01-10 05:07:04] 2026-01-10 10:06:30,299 | INFO     | [data] control thread has finished
[2026-01-10 05:07:04] 2026-01-10 10:06:30,452 | INFO     | all job control threads have been joined
[2026-01-10 05:07:04] 2026-01-10 10:06:30,596 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 05:07:04] 2026-01-10 10:06:30,601 | INFO     | [job] validate thread has finished
[2026-01-10 05:07:04] 2026-01-10 10:06:30,602 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 05:07:04] 2026-01-10 10:06:30,773 | INFO     | [job] job monitor thread has finished
[2026-01-10 05:07:04] 2026-01-10 10:06:30,797 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 05:07:04] 2026-01-10 10:06:30,906 | INFO     | [payload] control thread has finished
[2026-01-10 05:07:04] 2026-01-10 10:06:31,131 | INFO     | [data] copytool_in thread has finished
[2026-01-10 05:07:04] 2026-01-10 10:06:31,310 | INFO     | [payload] validate_post thread has finished
[2026-01-10 05:07:04] 2026-01-10 10:06:31,458 | INFO     | [job] control thread has finished
[2026-01-10 05:07:04] 2026-01-10 10:06:32,132 | INFO     | [data] copytool_out thread has finished
[2026-01-10 05:07:04] 2026-01-10 10:06:32,147 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 05:07:04] 2026-01-10 10:06:34,545 | INFO     | [monitor] cgroup control has ended
[2026-01-10 05:07:04] 2026-01-10 10:06:36,156 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 05:07:04] 2026-01-10 10:06:36,787 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140268733990720)>', '<ExcThread(monitor, started 140268380608256)>']
[2026-01-10 05:07:04] 2026-01-10 10:06:41,814 | INFO     | all workflow threads have been joined
[2026-01-10 05:07:04] 2026-01-10 10:06:41,815 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 05:07:04] 2026-01-10 10:06:41,816 | INFO     | traces error code: 0
[2026-01-10 05:07:04] 2026-01-10 10:06:41,816 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 05:07:04] 2026-01-10 10:07:01,803 | INFO     | PID=2888183 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 05:07:04] 2026-01-10 10:07:01,806 | INFO     | .. there are 17 such processes running
[2026-01-10 05:07:04] 2026-01-10 10:07:01,808 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 05:07:04] 2026-01-10 10:07:01,808 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 05:07:04] 2026-01-10 10:07:01,809 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 05:07:04] 2026-01-10 10:07:01,809 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 05:07:04] 2026-01-10 10:07:01,809 | INFO     | [monitor] control thread has ended
[2026-01-10 05:07:04] 2026-01-10 10:07:02,575 [wrapper] ==== pilot stdout END ====
[2026-01-10 05:07:04] 2026-01-10 10:07:02,639 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 05:07:04] 2026-01-10 10:07:02,689 [wrapper] pilotpid: 2888183
[2026-01-10 05:07:04] 2026-01-10 10:07:02,724 [wrapper] Pilot exit status: 0
[2026-01-10 05:07:04] 2026-01-10 10:07:02,960 [wrapper] pandaids: 6963165625
[2026-01-10 05:07:04] 2026-01-10 10:07:03,270 [wrapper] cleanup supervisor_pilot  782617 2888184
[2026-01-10 05:07:04] 2026-01-10 10:07:03,354 [wrapper] Test setup, not cleaning
[2026-01-10 05:07:04] 2026-01-10 10:07:03,415 [wrapper] apfmon messages muted
[2026-01-10 05:07:04] 2026-01-10 10:07:03,522 [wrapper] ==== wrapper stdout END ====
[2026-01-10 05:07:04] 2026-01-10 10:07:03,569 [wrapper] ==== wrapper stderr END ====
[2026-01-10 05:07:04]  *** Error codes and diagnostics ***
[2026-01-10 05:07:04]     "exeErrorCode": 0,
[2026-01-10 05:07:04]     "exeErrorDiag": "",
[2026-01-10 05:07:04]     "pilotErrorCode": 0,
[2026-01-10 05:07:04]     "pilotErrorDiag": "",
[2026-01-10 05:07:04]  *** Listing of results directory ***
[2026-01-10 05:07:04] total 449892
[2026-01-10 05:07:04] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-10 05:07:04] -rwx------. 1 boincer umatlas     36322 Jan  8 19:59 runpilot2-wrapper.sh
[2026-01-10 05:07:04] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 20:02 queuedata.json
[2026-01-10 05:07:04] -rw-r--r--. 1 boincer umatlas       100 Jan  9 13:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 05:07:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 13:18 run_atlas
[2026-01-10 05:07:04] -rw-r--r--. 1 boincer umatlas       105 Jan  9 13:18 job.xml
[2026-01-10 05:07:04] -rw-r--r--. 2 boincer umatlas 222689245 Jan  9 13:18 EVNT.47898824._001349.pool.root.1
[2026-01-10 05:07:04] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 13:18 start_atlas.sh
[2026-01-10 05:07:04] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 13:18 shared
[2026-01-10 05:07:04] -rw-r--r--. 2 boincer umatlas    592397 Jan  9 13:18 input.tar.gz
[2026-01-10 05:07:04] -rw-r--r--. 1 boincer umatlas         0 Jan  9 13:18 boinc_lockfile
[2026-01-10 05:07:04] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 13:18 pandaJob.out
[2026-01-10 05:07:04] -rw-------. 1 boincer umatlas        57 Jan  9 13:18 setup.sh.local
[2026-01-10 05:07:04] -rw-------. 1 boincer umatlas    989372 Jan  9 13:20 agis_schedconf.cvmfs.json
[2026-01-10 05:07:04] drwx------. 5 boincer umatlas      4096 Jan  9 13:20 pilot3
[2026-01-10 05:07:04] -rw-------. 1 boincer umatlas 221137306 Jan 10 04:57 HITS.47898826._034844.pool.root.1
[2026-01-10 05:07:04] -rw-r--r--. 1 boincer umatlas       532 Jan 10 04:58 boinc_task_state.xml
[2026-01-10 05:07:04] -rw-r--r--. 1 boincer umatlas      6859 Jan 10 05:04 init_data.xml
[2026-01-10 05:07:04] -rw-------. 1 boincer umatlas      1039 Jan 10 05:05 memory_monitor_summary.json
[2026-01-10 05:07:04] -rw-------. 1 boincer umatlas   1516240 Jan 10 05:05 agis_ddmendpoints.agis.ALL.json
[2026-01-10 05:07:04] -rw-------. 1 boincer umatlas    896773 Jan 10 05:05 log.47898826._034844.job.log.tgz.1
[2026-01-10 05:07:04] -rw-------. 1 boincer umatlas      7834 Jan 10 05:06 heartbeat.json
[2026-01-10 05:07:04] -rw-------. 1 boincer umatlas        95 Jan 10 05:07 pilot_heartbeat.json
[2026-01-10 05:07:04] -rw-------. 1 boincer umatlas       823 Jan 10 05:07 pilotlog.txt
[2026-01-10 05:07:04] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 05:07 boinc_mmap_file
[2026-01-10 05:07:04] -rw-------. 1 boincer umatlas   5581242 Jan 10 05:07 log.47898826._034844.job.log.1
[2026-01-10 05:07:04] -rw-r--r--. 1 boincer umatlas        29 Jan 10 05:07 wrapper_checkpoint.txt
[2026-01-10 05:07:04] -rw-------. 1 boincer umatlas       357 Jan 10 05:07 output.list
[2026-01-10 05:07:04] -rw-r--r--. 1 boincer umatlas       620 Jan 10 05:07 runtime_log
[2026-01-10 05:07:04] -rw-------. 1 boincer umatlas   6492160 Jan 10 05:07 result.tar.gz
[2026-01-10 05:07:04] -rw-------. 1 boincer umatlas       662 Jan 10 05:07 p54LDmM1Fy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtylKDmmNGFEn.diag
[2026-01-10 05:07:04] -rw-r--r--. 1 boincer umatlas      9353 Jan 10 05:07 runtime_log.err
[2026-01-10 05:07:04] -rw-r--r--. 1 boincer umatlas     21298 Jan 10 05:07 stderr.txt
[2026-01-10 05:07:04] HITS file was successfully produced:
[2026-01-10 05:07:04] -rw-------. 1 boincer umatlas 221137306 Jan 10 04:57 shared/HITS.pool.root.1
[2026-01-10 05:07:04]  *** Contents of shared directory: ***
[2026-01-10 05:07:04] total 440372
[2026-01-10 05:07:04] -rw-r--r--. 2 boincer umatlas 222689245 Jan  9 13:18 ATLAS.root_0
[2026-01-10 05:07:04] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 13:18 start_atlas.sh
[2026-01-10 05:07:04] -rw-r--r--. 2 boincer umatlas    592397 Jan  9 13:18 input.tar.gz
[2026-01-10 05:07:04] -rw-------. 1 boincer umatlas 221137306 Jan 10 04:57 HITS.pool.root.1
[2026-01-10 05:07:04] -rw-------. 1 boincer umatlas   6492160 Jan 10 05:07 result.tar.gz
05:07:06 (2881066): run_atlas exited; CPU time 156789.973601
05:07:06 (2881066): called boinc_finish(0)

</stderr_txt>
]]>

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