Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:00:27 (2212262): wrapper (7.7.26015): starting
12:00:27 (2212262): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 12:00:27] Arguments: --nthreads 8
[2026-01-09 12:00:27] Threads: 8
[2026-01-09 12:00:27] Checking for CVMFS
[2026-01-09 12:00:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 12:00:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 12:00:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 12:00:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 12:00:29] 2.13.3.0 10749 49996 503624 154950 2 572 22726305 32935936 54303 16776704 0 524633937 99.784 283303381 29013 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 12:00:29] CVMFS is ok
[2026-01-09 12:00:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 12:00:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 12:00:29] Further information can be found at the LHC@home message board.
[2026-01-09 12:00:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 12:00:29] Checking for apptainer binary...
[2026-01-09 12:00:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 12:00:29] Running /usr/bin/apptainer --version
[2026-01-09 12:00:29] apptainer version 1.4.5-2.el9
[2026-01-09 12:00:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 12:00:30] lc-12-33.aglt2.org
[2026-01-09 12:00:30] apptainer works
[2026-01-09 12:00:30] Set ATHENA_PROC_NUMBER=8
[2026-01-09 12:00:30] Set ATHENA_CORE_NUMBER=8
[2026-01-09 12:00:30] Starting ATLAS job with PandaID=6963167572
[2026-01-09 12:00:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:20:09 (2212262): BOINC client no longer exists - exiting
15:20:09 (2212262): timer handler: client dead, exiting
15:28:46 (623415): wrapper (7.7.26015): starting
15:28:46 (623415): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 15:28:46] Arguments: --nthreads 8
[2026-01-09 15:28:46] Threads: 8
[2026-01-09 15:28:46] This job has been restarted, cleaning up previous attempt
[2026-01-09 15:28:47] Checking for CVMFS
[2026-01-09 15:28:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 15:28:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 15:28:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 15:28:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 15:28:48] 2.13.3.0 10749 50205 496736 154956 2 341 25759242 32935937 53884 16776704 0 527086517 99.784 284145527 29012 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 15:28:48] CVMFS is ok
[2026-01-09 15:28:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 15:28:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 15:28:48] Further information can be found at the LHC@home message board.
[2026-01-09 15:28:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 15:28:48] Checking for apptainer binary...
[2026-01-09 15:28:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 15:28:48] Running /usr/bin/apptainer --version
[2026-01-09 15:28:49] apptainer version 1.4.5-2.el9
[2026-01-09 15:28:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 15:28:49] lc-12-33.aglt2.org
[2026-01-09 15:28:49] apptainer works
[2026-01-09 15:28:49] Set ATHENA_PROC_NUMBER=8
[2026-01-09 15:28:49] Set ATHENA_CORE_NUMBER=8
[2026-01-09 15:28:49] Starting ATLAS job with PandaID=6963167572
[2026-01-09 15:28:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 23:34:26]  *** The last 200 lines of the pilot log: ***
[2026-01-09 23:34:26] 2026-01-10 04:33:12,546 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6963167572/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 23:34:26] 2026-01-10 04:33:12,547 | INFO     | extracted standard info from prmon json
[2026-01-09 23:34:26] 2026-01-10 04:33:12,547 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 23:34:26] 2026-01-10 04:33:12,547 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 23:34:26] 2026-01-10 04:33:12,548 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 23:34:26] 2026-01-10 04:33:12,548 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 23:34:26] 2026-01-10 04:33:12,555 | INFO     | fitting pss+swap vs Time
[2026-01-09 23:34:26] 2026-01-10 04:33:12,556 | INFO     | sum of square deviations: 33022762420.601143
[2026-01-09 23:34:26] 2026-01-10 04:33:12,561 | INFO     | sum of deviations: 82681163887.96832
[2026-01-09 23:34:26] 2026-01-10 04:33:12,561 | INFO     | mean x: 1768005077.563291
[2026-01-09 23:34:26] 2026-01-10 04:33:12,561 | INFO     | mean y: 2499087.917721519
[2026-01-09 23:34:26] 2026-01-10 04:33:12,561 | INFO     | intersect: -4424166244.040584
[2026-01-09 23:34:26] 2026-01-10 04:33:12,562 | INFO     | chi2: 2.5022338116694014
[2026-01-09 23:34:26] 2026-01-10 04:33:12,563 | INFO     | sum of square deviations: 31988733578.081
[2026-01-09 23:34:26] 2026-01-10 04:33:12,567 | INFO     | sum of deviations: 111461319484.06406
[2026-01-09 23:34:26] 2026-01-10 04:33:12,568 | INFO     | mean x: 1768004925.0639658
[2026-01-09 23:34:26] 2026-01-10 04:33:12,568 | INFO     | mean y: 2503294.997867804
[2026-01-09 23:34:26] 2026-01-10 04:33:12,568 | INFO     | intersect: -6157920696.80979
[2026-01-09 23:34:26] 2026-01-10 04:33:12,568 | INFO     | chi2: 1.8210878493156628
[2026-01-09 23:34:26] 2026-01-10 04:33:12,568 | INFO     | current chi2=1.8210878493156628 (change=27.22151539864703 %)
[2026-01-09 23:34:26] 2026-01-10 04:33:12,569 | INFO     | sum of square deviations: 30976519098.06042
[2026-01-09 23:34:26] 2026-01-10 04:33:12,574 | INFO     | sum of deviations: 110100056133.40955
[2026-01-09 23:34:26] 2026-01-10 04:33:12,574 | INFO     | mean x: 1768004772.564655
[2026-01-09 23:34:26] 2026-01-10 04:33:12,574 | INFO     | mean y: 2503089.9030172415
[2026-01-09 23:34:26] 2026-01-10 04:33:12,574 | INFO     | intersect: -6281528504.715142
[2026-01-09 23:34:26] 2026-01-10 04:33:12,575 | INFO     | chi2: 1.8212442437574963
[2026-01-09 23:34:26] 2026-01-10 04:33:12,575 | INFO     | current chi2=1.8212442437574963 (change=-0.008587968004521775 %)
[2026-01-09 23:34:26] 2026-01-10 04:33:12,575 | INFO     | right removable region: 463
[2026-01-09 23:34:26] 2026-01-10 04:33:12,576 | INFO     | sum of square deviations: 31988715278.080994
[2026-01-09 23:34:26] 2026-01-10 04:33:12,580 | INFO     | sum of deviations: -9103811553.37315
[2026-01-09 23:34:26] 2026-01-10 04:33:12,581 | INFO     | mean x: 1768005230.0639658
[2026-01-09 23:34:26] 2026-01-10 04:33:12,581 | INFO     | mean y: 2512579.1791044776
[2026-01-09 23:34:26] 2026-01-10 04:33:12,581 | INFO     | intersect: 505677095.1641948
[2026-01-09 23:34:26] 2026-01-10 04:33:12,582 | INFO     | chi2: 0.7550685433934341
[2026-01-09 23:34:26] 2026-01-10 04:33:12,582 | INFO     | current chi2=0.7550685433934341 (change=69.82422106710806 %)
[2026-01-09 23:34:26] 2026-01-10 04:33:12,582 | INFO     | sum of square deviations: 30976482498.0604
[2026-01-09 23:34:26] 2026-01-10 04:33:12,587 | INFO     | sum of deviations: -26159250072.96983
[2026-01-09 23:34:26] 2026-01-10 04:33:12,587 | INFO     | mean x: 1768005382.564655
[2026-01-09 23:34:26] 2026-01-10 04:33:12,587 | INFO     | mean y: 2515143.7823275863
[2026-01-09 23:34:26] 2026-01-10 04:33:12,587 | INFO     | intersect: 1495573464.2601755
[2026-01-09 23:34:26] 2026-01-10 04:33:12,588 | INFO     | chi2: 0.7004776378047688
[2026-01-09 23:34:26] 2026-01-10 04:33:12,589 | INFO     | current chi2=0.7004776378047688 (change=7.229927145861817 %)
[2026-01-09 23:34:26] 2026-01-10 04:33:12,589 | INFO     | left removable region: 20
[2026-01-09 23:34:26] 2026-01-10 04:33:12,589 | INFO     | sum of square deviations: 26958136899.101665
[2026-01-09 23:34:26] 2026-01-10 04:33:12,594 | INFO     | sum of deviations: 3529039735.5959353
[2026-01-09 23:34:26] 2026-01-10 04:33:12,594 | INFO     | mean x: 1768005352.0654628
[2026-01-09 23:34:26] 2026-01-10 04:33:12,594 | INFO     | mean y: 2519473.11738149
[2026-01-09 23:34:26] 2026-01-10 04:33:12,594 | INFO     | intersect: -228926830.59187874
[2026-01-09 23:34:26] 2026-01-10 04:33:12,595 | INFO     | chi2: 0.010497671684048769
[2026-01-09 23:34:26] 2026-01-10 04:33:12,595 | INFO     | current memory leak: 0.13 B/s (using 443 data points, chi2=0.01)
[2026-01-09 23:34:26] 2026-01-10 04:33:12,595 | INFO     | could have reported an average CPU frequency of 2931 MHz (19 samples)
[2026-01-09 23:34:26] 2026-01-10 04:33:12,596 | INFO     | ..............................
[2026-01-09 23:34:26] 2026-01-10 04:33:12,596 | INFO     | . Timing measurements:
[2026-01-09 23:34:26] 2026-01-10 04:33:12,596 | INFO     | . get job = 0 s
[2026-01-09 23:34:26] 2026-01-10 04:33:12,596 | INFO     | . initial setup = 4 s
[2026-01-09 23:34:26] 2026-01-10 04:33:12,596 | INFO     | . payload setup = 20 s
[2026-01-09 23:34:26] 2026-01-10 04:33:12,596 | INFO     | . stage-in = 0 s
[2026-01-09 23:34:26] 2026-01-10 04:33:12,596 | INFO     | . payload execution = 28917 s
[2026-01-09 23:34:26] 2026-01-10 04:33:12,596 | INFO     | . stage-out = 6 s
[2026-01-09 23:34:26] 2026-01-10 04:33:12,596 | INFO     | . log creation = 0 s
[2026-01-09 23:34:26] 2026-01-10 04:33:12,596 | INFO     | ..............................
[2026-01-09 23:34:26] 2026-01-10 04:33:12,683 | INFO     | PID=654487 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 23:34:26] 2026-01-10 04:33:12,684 | INFO     | .. there are 91 such processes running
[2026-01-09 23:34:26] 2026-01-10 04:33:12,890 | INFO     | 
[2026-01-09 23:34:26] 2026-01-10 04:33:12,891 | INFO     | job summary report
[2026-01-09 23:34:26] 2026-01-10 04:33:12,891 | INFO     | --------------------------------------------------
[2026-01-09 23:34:26] 2026-01-10 04:33:12,891 | INFO     | PanDA job id: 6963167572
[2026-01-09 23:34:26] 2026-01-10 04:33:12,891 | INFO     | task id: 47898826
[2026-01-09 23:34:26] 2026-01-10 04:33:12,891 | INFO     | errors: (none)
[2026-01-09 23:34:26] 2026-01-10 04:33:12,891 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 23:34:26] 2026-01-10 04:33:12,891 | INFO     | pilot state: finished 
[2026-01-09 23:34:26] 2026-01-10 04:33:12,891 | INFO     | transexitcode: 0
[2026-01-09 23:34:26] 2026-01-10 04:33:12,891 | INFO     | exeerrorcode: 0
[2026-01-09 23:34:26] 2026-01-10 04:33:12,891 | INFO     | exeerrordiag: 
[2026-01-09 23:34:26] 2026-01-10 04:33:12,891 | INFO     | exitcode: 0
[2026-01-09 23:34:26] 2026-01-10 04:33:12,891 | INFO     | exitmsg: OK
[2026-01-09 23:34:26] 2026-01-10 04:33:12,891 | INFO     | cpuconsumptiontime: 59152 s
[2026-01-09 23:34:26] 2026-01-10 04:33:12,892 | INFO     | nevents: 400
[2026-01-09 23:34:26] 2026-01-10 04:33:12,892 | INFO     | neventsw: 0
[2026-01-09 23:34:26] 2026-01-10 04:33:12,892 | INFO     | pid: 707176
[2026-01-09 23:34:26] 2026-01-10 04:33:12,892 | INFO     | pgrp: 707176
[2026-01-09 23:34:26] 2026-01-10 04:33:12,892 | INFO     | corecount: 8
[2026-01-09 23:34:26] 2026-01-10 04:33:12,892 | INFO     | event service: False
[2026-01-09 23:34:26] 2026-01-10 04:33:12,892 | INFO     | sizes: {0: 2283744, 1: 2283828, 2: 2284027, 13: 2284027, 16: 2284345, 23: 2284373, 28943: 2321207, 28944: 2321206, 28951: 2330260, 28954: 2330316, 28990: 2330510}
[2026-01-09 23:34:26] 2026-01-10 04:33:12,892 | INFO     | --------------------------------------------------
[2026-01-09 23:34:26] 2026-01-10 04:33:12,892 | INFO     | 
[2026-01-09 23:34:26] 2026-01-10 04:33:12,892 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-09 23:34:26] 2026-01-10 04:33:13,037 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 23:34:26] 2026-01-10 04:33:13,038 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 23:34:26] 2026-01-10 04:33:13,038 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 23:34:26] 2026-01-10 04:33:13,038 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 23:34:26] 2026-01-10 04:33:13,038 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 23:34:26] 2026-01-10 04:33:13,038 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 23:34:26] 2026-01-10 04:33:13,038 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 23:34:26] 2026-01-10 04:33:13,038 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 23:34:26] 2026-01-10 04:33:13,038 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 23:34:26] 2026-01-10 04:33:13,038 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 23:34:26] 2026-01-10 04:33:13,039 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 23:34:26] 2026-01-10 04:33:13,039 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 23:34:26] 2026-01-10 04:33:13,039 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 23:34:26] 2026-01-10 04:33:13,039 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 23:34:26] 2026-01-10 04:33:13,039 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 23:34:26] 2026-01-10 04:33:13,039 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 23:34:26] 2026-01-10 04:33:13,039 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 23:34:26] 2026-01-10 04:33:13,039 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 23:34:26] 2026-01-10 04:33:13,039 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 23:34:26] 2026-01-10 04:33:13,039 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 23:34:26] 2026-01-10 04:33:13,039 | INFO     | job 6963167572 has completed (purged errors)
[2026-01-09 23:34:26] 2026-01-10 04:33:13,039 | INFO     | overall cleanup function is called
[2026-01-09 23:34:26] 2026-01-10 04:33:14,050 | INFO     | --- collectZombieJob: --- 10, [707176]
[2026-01-09 23:34:26] 2026-01-10 04:33:14,050 | INFO     | zombie collector waiting for pid 707176
[2026-01-09 23:34:26] 2026-01-10 04:33:14,051 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 23:34:26] 2026-01-10 04:33:14,051 | INFO     | collected zombie processes
[2026-01-09 23:34:26] 2026-01-10 04:33:14,051 | INFO     | will attempt to kill all subprocesses of pid=707176
[2026-01-09 23:34:26] 2026-01-10 04:33:15,817 | INFO     | process IDs to be killed: [707176] (in reverse order)
[2026-01-09 23:34:26] 2026-01-10 04:33:17,461 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 23:34:26] 2026-01-10 04:33:17,462 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 23:34:26] 2026-01-10 04:33:18,078 | INFO     | did not find any defunct processes belonging to 707176
[2026-01-09 23:34:26] 2026-01-10 04:33:18,210 | INFO     | did not find any defunct processes belonging to 707176
[2026-01-09 23:34:26] 2026-01-10 04:33:18,210 | INFO     | ready for new job
[2026-01-09 23:34:26] 2026-01-10 04:33:18,210 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 23:34:26] 2026-01-10 04:33:18,217 | INFO     | ***************************************
[2026-01-09 23:34:26] 2026-01-10 04:33:18,217 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 23:34:26] 2026-01-10 04:33:18,217 | INFO     | ***************************************
[2026-01-09 23:34:26] 2026-01-10 04:33:18,217 | INFO     | 
[2026-01-09 23:34:26] 2026-01-10 04:33:18,231 | INFO     | architecture information:
[2026-01-09 23:34:26] 2026-01-10 04:33:18,231 | INFO     | executing command: cat /etc/os-release
[2026-01-09 23:34:26] 2026-01-10 04:33:18,286 | INFO     | cat /etc/os-release:
[2026-01-09 23:34:26] NAME="CentOS Linux"
[2026-01-09 23:34:26] VERSION="7 (Core)"
[2026-01-09 23:34:26] ID="centos"
[2026-01-09 23:34:26] ID_LIKE="rhel fedora"
[2026-01-09 23:34:26] VERSION_ID="7"
[2026-01-09 23:34:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 23:34:26] ANSI_COLOR="0;31"
[2026-01-09 23:34:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 23:34:26] HOME_URL="https://www.centos.org/"
[2026-01-09 23:34:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 23:34:26] 
[2026-01-09 23:34:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 23:34:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 23:34:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 23:34:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 23:34:26] 
[2026-01-09 23:34:26] 2026-01-10 04:33:18,287 | INFO     | ***************************************
[2026-01-09 23:34:26] 2026-01-10 04:33:18,790 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-09 23:34:26] 2026-01-10 04:33:18,859 | INFO     | sufficient remaining disk space (72546779136 B)
[2026-01-09 23:34:26] 2026-01-10 04:33:18,859 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 23:34:26] 2026-01-10 04:33:18,859 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 23:34:26] 2026-01-10 04:33:18,859 | INFO     | update_server=False
[2026-01-09 23:34:26] 2026-01-10 04:33:18,859 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 23:34:26] 2026-01-10 04:33:18,982 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 23:34:26] 2026-01-10 04:33:18,983 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 23:34:26] 2026-01-10 04:33:18,985 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:34:26] 2026-01-10 04:33:18,985 | INFO     | will abort loop
[2026-01-09 23:34:26] 2026-01-10 04:33:19,127 | INFO     | all job control threads have been joined
[2026-01-09 23:34:26] 2026-01-10 04:33:19,203 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 23:34:26] 2026-01-10 04:33:19,351 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 23:34:26] 2026-01-10 04:33:19,691 | INFO     | all data control threads have been joined
[2026-01-09 23:34:26] 2026-01-10 04:33:19,868 | INFO     | [job] retrieve thread has finished
[2026-01-09 23:34:26] 2026-01-10 04:33:19,991 | INFO     | [job] job monitor thread has finished
[2026-01-09 23:34:26] 2026-01-10 04:33:19,999 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 23:34:26] 2026-01-10 04:33:20,000 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 23:34:26] 2026-01-10 04:33:20,092 | INFO     | [payload] validate_post thread has finished
[2026-01-09 23:34:26] 2026-01-10 04:33:20,137 | INFO     | [job] control thread has finished
[2026-01-09 23:34:26] 2026-01-10 04:33:20,203 | INFO     | all payload control threads have been joined
[2026-01-09 23:34:26] 2026-01-10 04:33:20,697 | INFO     | [data] control thread has finished
[2026-01-09 23:34:26] 2026-01-10 04:33:20,831 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 23:34:26] 2026-01-10 04:33:20,835 | INFO     | [job] validate thread has finished
[2026-01-09 23:34:26] 2026-01-10 04:33:20,954 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 23:34:26] 2026-01-10 04:33:21,208 | INFO     | [payload] control thread has finished
[2026-01-09 23:34:26] 2026-01-10 04:33:21,340 | INFO     | [data] copytool_in thread has finished
[2026-01-09 23:34:26] 2026-01-10 04:33:21,360 | INFO     | [data] copytool_out thread has finished
[2026-01-09 23:34:26] 2026-01-10 04:33:21,414 | INFO     | [payload] failed_post thread has finished
[2026-01-09 23:34:26] 2026-01-10 04:33:21,844 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:34:26] 2026-01-10 04:33:22,850 | INFO     | [job] queue monitor thread has finished
[2026-01-09 23:34:26] 2026-01-10 04:33:23,215 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 23:34:26] 2026-01-10 04:33:46,103 | INFO     | PID=654487 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 23:34:26] 2026-01-10 04:33:46,103 | INFO     | .. there are 91 such processes running
[2026-01-09 23:34:26] 2026-01-10 04:33:46,104 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 23:34:26] 2026-01-10 04:33:46,104 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 23:34:26] 2026-01-10 04:33:46,104 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 23:34:26] 2026-01-10 04:34:17,779 | INFO     | [monitor] cgroup control has ended
[2026-01-09 23:34:26] 2026-01-10 04:34:19,606 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140274745026368)>', '<ExcThread(monitor, started 140274403620608)>']
[2026-01-09 23:34:26] 2026-01-10 04:34:20,416 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 23:34:26] 2026-01-10 04:34:20,416 | INFO     | [monitor] control thread has ended
[2026-01-09 23:34:26] 2026-01-10 04:34:24,632 | INFO     | all workflow threads have been joined
[2026-01-09 23:34:26] 2026-01-10 04:34:24,632 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 23:34:26] 2026-01-10 04:34:24,633 | INFO     | traces error code: 0
[2026-01-09 23:34:26] 2026-01-10 04:34:24,633 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 23:34:26] 2026-01-10 04:34:25,432 [wrapper] ==== pilot stdout END ====
[2026-01-09 23:34:26] 2026-01-10 04:34:25,479 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 23:34:26] 2026-01-10 04:34:25,496 [wrapper] pilotpid: 654487
[2026-01-09 23:34:26] 2026-01-10 04:34:25,517 [wrapper] Pilot exit status: 0
[2026-01-09 23:34:26] 2026-01-10 04:34:25,619 [wrapper] pandaids: 6963167572 6963167572
[2026-01-09 23:34:26] 2026-01-10 04:34:26,052 [wrapper] cleanup supervisor_pilot 2006080 654488
[2026-01-09 23:34:26] 2026-01-10 04:34:26,088 [wrapper] Test setup, not cleaning
[2026-01-09 23:34:26] 2026-01-10 04:34:26,103 [wrapper] apfmon messages muted
[2026-01-09 23:34:26] 2026-01-10 04:34:26,118 [wrapper] ==== wrapper stdout END ====
[2026-01-09 23:34:26] 2026-01-10 04:34:26,134 [wrapper] ==== wrapper stderr END ====
[2026-01-09 23:34:26]  *** Error codes and diagnostics ***
[2026-01-09 23:34:26]     "exeErrorCode": 0,
[2026-01-09 23:34:26]     "exeErrorDiag": "",
[2026-01-09 23:34:26]     "pilotErrorCode": 0,
[2026-01-09 23:34:26]     "pilotErrorDiag": "",
[2026-01-09 23:34:26]  *** Listing of results directory ***
[2026-01-09 23:34:26] total 655984
[2026-01-09 23:34:26] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 23:34:26] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-09 23:34:26] -rwx------. 1 boincer umatlas     36322 Jan  8 19:59 runpilot2-wrapper.sh
[2026-01-09 23:34:26] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 20:03 queuedata.json
[2026-01-09 23:34:26] -rw-r--r--. 1 boincer umatlas       100 Jan  9 12:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 23:34:26] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 12:00 run_atlas
[2026-01-09 23:34:26] -rw-r--r--. 1 boincer umatlas       105 Jan  9 12:00 job.xml
[2026-01-09 23:34:26] -rw-r--r--. 3 boincer umatlas 223006497 Jan  9 12:00 EVNT.47898824._001329.pool.root.1
[2026-01-09 23:34:26] -rw-r--r--. 3 boincer umatlas 223006497 Jan  9 12:00 ATLAS.root_0
[2026-01-09 23:34:26] -rw-r--r--. 2 boincer umatlas    592403 Jan  9 12:00 input.tar.gz
[2026-01-09 23:34:26] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 12:00 start_atlas.sh
[2026-01-09 23:34:26] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 12:00 shared
[2026-01-09 23:34:26] -rw-r--r--. 1 boincer umatlas         0 Jan  9 12:00 boinc_lockfile
[2026-01-09 23:34:26] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 15:28 pandaJob.out
[2026-01-09 23:34:26] -rw-------. 1 boincer umatlas        57 Jan  9 15:28 setup.sh.local
[2026-01-09 23:34:26] -rw-------. 1 boincer umatlas    989381 Jan  9 15:29 agis_schedconf.cvmfs.json
[2026-01-09 23:34:26] -rw-r--r--. 1 boincer umatlas      6862 Jan  9 23:30 init_data.xml
[2026-01-09 23:34:26] -rw-------. 1 boincer umatlas 214310961 Jan  9 23:31 HITS.47898826._035813.pool.root.1
[2026-01-09 23:34:26] -rw-r--r--. 1 boincer umatlas       531 Jan  9 23:31 boinc_task_state.xml
[2026-01-09 23:34:26] -rw-------. 1 boincer umatlas      1046 Jan  9 23:32 memory_monitor_summary.json
[2026-01-09 23:34:26] -rw-------. 1 boincer umatlas   1516240 Jan  9 23:32 agis_ddmendpoints.agis.ALL.json
[2026-01-09 23:34:26] -rw-------. 1 boincer umatlas    607500 Jan  9 23:32 log.47898826._035813.job.log.tgz.1
[2026-01-09 23:34:26] -rw-------. 1 boincer umatlas      7824 Jan  9 23:33 heartbeat.json
[2026-01-09 23:34:26] -rw-------. 1 boincer umatlas        96 Jan  9 23:33 pilot_heartbeat.json
[2026-01-09 23:34:26] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 23:33 boinc_mmap_file
[2026-01-09 23:34:26] -rw-r--r--. 1 boincer umatlas        28 Jan  9 23:33 wrapper_checkpoint.txt
[2026-01-09 23:34:26] -rw-------. 1 boincer umatlas      5009 Jan  9 23:34 pilotlog.txt
[2026-01-09 23:34:26] -rw-------. 1 boincer umatlas   3132914 Jan  9 23:34 log.47898826._035813.job.log.1
[2026-01-09 23:34:26] -rw-------. 1 boincer umatlas       357 Jan  9 23:34 output.list
[2026-01-09 23:34:26] -rw-r--r--. 1 boincer umatlas       620 Jan  9 23:34 runtime_log
[2026-01-09 23:34:26] -rw-------. 1 boincer umatlas   3758080 Jan  9 23:34 result.tar.gz
[2026-01-09 23:34:26] -rw-------. 1 boincer umatlas       783 Jan  9 23:34 tAuMDmY1Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAmgKDmUUxJRo.diag
[2026-01-09 23:34:26] -rw-r--r--. 1 boincer umatlas      9428 Jan  9 23:34 runtime_log.err
[2026-01-09 23:34:26] -rw-r--r--. 1 boincer umatlas     23574 Jan  9 23:34 stderr.txt
[2026-01-09 23:34:26] HITS file was successfully produced:
[2026-01-09 23:34:26] -rw-------. 1 boincer umatlas 214310961 Jan  9 23:31 shared/HITS.pool.root.1
[2026-01-09 23:34:26]  *** Contents of shared directory: ***
[2026-01-09 23:34:26] total 431348
[2026-01-09 23:34:26] -rw-r--r--. 3 boincer umatlas 223006497 Jan  9 12:00 ATLAS.root_0
[2026-01-09 23:34:26] -rw-r--r--. 2 boincer umatlas    592403 Jan  9 12:00 input.tar.gz
[2026-01-09 23:34:26] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 12:00 start_atlas.sh
[2026-01-09 23:34:26] -rw-------. 1 boincer umatlas 214310961 Jan  9 23:31 HITS.pool.root.1
[2026-01-09 23:34:26] -rw-------. 1 boincer umatlas   3758080 Jan  9 23:34 result.tar.gz
23:34:28 (623415): run_atlas exited; CPU time 61045.792431
23:34:28 (623415): called boinc_finish(0)

</stderr_txt>
]]>

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